RNA–Protein interactions for RNA: ENST00000548277.1

TRAFD1-205, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 2

Gene TRAFD1, Length 560 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-205ENST00000548277 ZCRB1Q8TBF4 217 aaKnown RBP16.82■□□□□ 0.28
TRAFD1-205ENST00000548277 SHANK3Q9BYB0 1731 aa16.82■□□□□ 0.28
TRAFD1-205ENST00000548277 PNPLA7Q6ZV29 1317 aa16.81■□□□□ 0.28
TRAFD1-205ENST00000548277 SLC27A3Q5K4L6 730 aa16.81■□□□□ 0.28
TRAFD1-205ENST00000548277 TESK2Q96S53 571 aa16.81■□□□□ 0.28
TRAFD1-205ENST00000548277 GGNBP2Q9H3C7 697 aa16.81■□□□□ 0.28
TRAFD1-205ENST00000548277 QSER1Q2KHR3 1735 aa16.8■□□□□ 0.28
TRAFD1-205ENST00000548277 POLD1P28340 1107 aa16.8■□□□□ 0.28
TRAFD1-205ENST00000548277 PUS7Q96PZ0 661 aaKnown RBP16.8■□□□□ 0.28
TRAFD1-205ENST00000548277 LY75O60449 1722 aa16.79■□□□□ 0.28
TRAFD1-205ENST00000548277 UTRNP46939 3433 aa16.79■□□□□ 0.28
TRAFD1-205ENST00000548277 NBPF6Q5VWK0 638 aa16.78■□□□□ 0.28
TRAFD1-205ENST00000548277 NBPF4Q96M43 638 aa16.78■□□□□ 0.28
TRAFD1-205ENST00000548277 CCNL1Q9UK58 526 aaPredicted RBP16.78■□□□□ 0.28
TRAFD1-205ENST00000548277 ANKRD36BQ8N2N9 1353 aa16.77■□□□□ 0.28
TRAFD1-205ENST00000548277 SLC16A10Q8TF71 515 aa16.77■□□□□ 0.28
TRAFD1-205ENST00000548277 MEGF6O75095 1541 aa16.76■□□□□ 0.27
TRAFD1-205ENST00000548277 FYB1O15117 783 aa16.76■□□□□ 0.27
TRAFD1-205ENST00000548277 NLGN2Q8NFZ4 835 aa16.76■□□□□ 0.27
TRAFD1-205ENST00000548277 MSL1Q68DK7 614 aa16.75■□□□□ 0.27
TRAFD1-205ENST00000548277 NSD2O96028 1365 aa16.75■□□□□ 0.27
TRAFD1-205ENST00000548277 SENP3-EIF4A1A0A087X0R7 540 aa16.74■□□□□ 0.27
TRAFD1-205ENST00000548277 COL23A1Q86Y22 540 aaPredicted RBP16.74■□□□□ 0.27
TRAFD1-205ENST00000548277 RAPGEF4Q8WZA2 1011 aa16.74■□□□□ 0.27
TRAFD1-205ENST00000548277 COL24A1Q17RW2 1714 aa16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 KIF20BQ96Q89 1820 aa16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 TATP17735 454 aaPredicted RBP16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 HSP90AB2PQ58FF8 381 aa16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 USP47Q96K76 1375 aa16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 ITGB4P16144 1822 aa16.73■□□□□ 0.27
TRAFD1-205ENST00000548277 TMF1P82094 1093 aa16.72■□□□□ 0.27
TRAFD1-205ENST00000548277 MPRIPQ6WCQ1 1025 aa16.72■□□□□ 0.27
TRAFD1-205ENST00000548277 MAP3K5Q99683 1374 aa16.72■□□□□ 0.27
TRAFD1-205ENST00000548277 TAF1LQ8IZX4 1826 aa16.72■□□□□ 0.27
TRAFD1-205ENST00000548277 C1QTNF8P60827 252 aa16.71■□□□□ 0.27
TRAFD1-205ENST00000548277 MAP2P11137 1827 aaKnown RBP16.7■□□□□ 0.26
TRAFD1-205ENST00000548277 C5P01031 1676 aa16.7■□□□□ 0.26
TRAFD1-205ENST00000548277 PPM1GO15355 546 aaPredicted RBP16.7■□□□□ 0.26
TRAFD1-205ENST00000548277 SLC24A1O60721 1099 aa16.7■□□□□ 0.26
TRAFD1-205ENST00000548277 SMG6Q86US8 1419 aaKnown RBP16.7■□□□□ 0.26
TRAFD1-205ENST00000548277 SMIM5Q71RC9 77 aa16.69■□□□□ 0.26
TRAFD1-205ENST00000548277 YBX3P16989 372 aaKnown RBP eCLIP16.68■□□□□ 0.26
TRAFD1-205ENST00000548277 RTL1A6NKG5 1358 aa16.67■□□□□ 0.26
TRAFD1-205ENST00000548277 WWC3Q9ULE0 1092 aa16.67■□□□□ 0.26
TRAFD1-205ENST00000548277 EMILIN1Q9Y6C2 1016 aa16.67■□□□□ 0.26
TRAFD1-205ENST00000548277 CYP27B1O15528 508 aa16.66■□□□□ 0.26
TRAFD1-205ENST00000548277 GIGYF1O75420 1035 aaPredicted RBP16.66■□□□□ 0.26
TRAFD1-205ENST00000548277 CGNL1Q0VF96 1302 aa16.66■□□□□ 0.26
TRAFD1-205ENST00000548277 PCDH11XQ9BZA7 1347 aa16.66■□□□□ 0.26
TRAFD1-205ENST00000548277 PCDH11YQ9BZA8 1340 aa16.66■□□□□ 0.26
TRAFD1-205ENST00000548277 INSRP06213 1382 aa16.65■□□□□ 0.26
TRAFD1-205ENST00000548277 PHF14O94880 888 aa16.65■□□□□ 0.26
TRAFD1-205ENST00000548277 CARD14Q9BXL6 1004 aa16.65■□□□□ 0.26
TRAFD1-205ENST00000548277 TOGARAM1Q9Y4F4 1720 aa16.65■□□□□ 0.26
TRAFD1-205ENST00000548277 PALLDQ8WX93 1383 aa16.64■□□□□ 0.26
TRAFD1-205ENST00000548277 TRIM26Q12899 539 aaPredicted RBP16.64■□□□□ 0.25
TRAFD1-205ENST00000548277 POLR3GLQ9BT43 218 aa16.64■□□□□ 0.25
TRAFD1-205ENST00000548277 FLT4P35916 1363 aa16.64■□□□□ 0.25
TRAFD1-205ENST00000548277 GRIN3BO60391 1043 aa16.63■□□□□ 0.25
TRAFD1-205ENST00000548277 CDCA8Q53HL2 280 aa16.62■□□□□ 0.25
TRAFD1-205ENST00000548277 AMIGO3Q86WK7 504 aa16.62■□□□□ 0.25
TRAFD1-205ENST00000548277 PIGBQ92521 554 aa16.62■□□□□ 0.25
TRAFD1-205ENST00000548277 AK7Q96M32 723 aa16.62■□□□□ 0.25
TRAFD1-205ENST00000548277 C4BP0C0L5 1744 aa16.62■□□□□ 0.25
TRAFD1-205ENST00000548277 UBR3Q6ZT12 1888 aa16.61■□□□□ 0.25
TRAFD1-205ENST00000548277 NSD3Q9BZ95 1437 aa16.61■□□□□ 0.25
TRAFD1-205ENST00000548277 TNNT2P45379 298 aaPredicted RBP16.6■□□□□ 0.25
TRAFD1-205ENST00000548277 FLAD1Q8NFF5 587 aa16.6■□□□□ 0.25
TRAFD1-205ENST00000548277 SMARCC1Q92922 1105 aaPredicted RBP16.6■□□□□ 0.25
TRAFD1-205ENST00000548277 GOLGB1Q14789 3259 aaKnown RBP16.59■□□□□ 0.25
TRAFD1-205ENST00000548277 ZNF526Q8TF50 670 aaPredicted RBP16.59■□□□□ 0.25
TRAFD1-205ENST00000548277 PKD1L3Q7Z443 1732 aa16.59■□□□□ 0.25
TRAFD1-205ENST00000548277 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.58■□□□□ 0.24
TRAFD1-205ENST00000548277 EYA1Q99502 592 aa16.58■□□□□ 0.24
TRAFD1-205ENST00000548277 SPG7Q9UQ90 795 aa16.58■□□□□ 0.24
TRAFD1-205ENST00000548277 ASAP1Q9ULH1 1129 aa16.57■□□□□ 0.24
TRAFD1-205ENST00000548277 CD2APQ9Y5K6 639 aa16.57■□□□□ 0.24
TRAFD1-205ENST00000548277 LINC00116Q8NCU8 138 aa16.56■□□□□ 0.24
TRAFD1-205ENST00000548277 TMOD3Q9NYL9 352 aa16.56■□□□□ 0.24
TRAFD1-205ENST00000548277 KIF24Q5T7B8 1368 aa16.55■□□□□ 0.24
TRAFD1-205ENST00000548277 LOC102724428A0A0B4J2F2 783 aa16.55■□□□□ 0.24
TRAFD1-205ENST00000548277 ATP6V1AP38606 617 aa16.55■□□□□ 0.24
TRAFD1-205ENST00000548277 SIK1P57059 783 aa16.55■□□□□ 0.24
TRAFD1-205ENST00000548277 ATP10DQ9P241 1426 aa16.54■□□□□ 0.24
TRAFD1-205ENST00000548277 WASHC2AQ641Q2 1341 aa16.54■□□□□ 0.24
TRAFD1-205ENST00000548277 HMGB2P26583 209 aaKnown RBP16.54■□□□□ 0.24
TRAFD1-205ENST00000548277 NKX1-1Q15270 411 aaPredicted RBP16.54■□□□□ 0.24
TRAFD1-205ENST00000548277 POLKQ9UBT6 870 aa16.54■□□□□ 0.24
TRAFD1-205ENST00000548277 IGSF1Q8N6C5 1336 aa16.53■□□□□ 0.24
TRAFD1-205ENST00000548277 GNPATO15228 680 aa16.53■□□□□ 0.24
TRAFD1-205ENST00000548277 ITPK1Q13572 414 aa16.53■□□□□ 0.24
TRAFD1-205ENST00000548277 IFNL2Q8IZJ0 200 aa16.53■□□□□ 0.24
TRAFD1-205ENST00000548277 GPBP1L1Q9HC44 474 aaPredicted RBP16.53■□□□□ 0.24
TRAFD1-205ENST00000548277 N4BP2Q86UW6 1770 aaPredicted RBP16.52■□□□□ 0.24
TRAFD1-205ENST00000548277 PHKG2P15735 406 aa16.52■□□□□ 0.24
TRAFD1-205ENST00000548277 RBM42Q9BTD8 480 aaKnown RBP16.52■□□□□ 0.24
TRAFD1-205ENST00000548277 ANKRD26Q9UPS8 1709 aa16.51■□□□□ 0.23
TRAFD1-205ENST00000548277 ATG3Q9NT62 314 aa16.51■□□□□ 0.23
TRAFD1-205ENST00000548277 SSFA2P28290 1259 aa16.5■□□□□ 0.23
TRAFD1-205ENST00000548277 EIF4A2Q14240 407 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms