RNA–Protein interactions for RNA: ENST00000548122.2

PTPRB-206, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 2

Gene PTPRB, Length 4,237 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-206ENST00000548122 CCDC125Q86Z20 511 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 SMARCC1Q92922 1105 aaPredicted RBP7.13□□□□□ -1.27
PTPRB-206ENST00000548122 SPATA31A1Q5TZJ5 1347 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 XRN1Q8IZH2 1706 aaKnown RBP7.13□□□□□ -1.27
PTPRB-206ENST00000548122 AATKQ6ZMQ8 1374 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 ERBB3P21860 1342 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 PCDH11XQ9BZA7 1347 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 PCDH11YQ9BZA8 1340 aa7.13□□□□□ -1.27
PTPRB-206ENST00000548122 DEFB132Q7Z7B7 95 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 PRIM1P49642 420 aaKnown RBP7.12□□□□□ -1.27
PTPRB-206ENST00000548122 CCDC146Q8IYE0 955 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 POLKQ9UBT6 870 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 NRXN3Q9Y4C0 1643 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 AXIN2Q9Y2T1 843 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 CANXP27824 592 aaKnown RBP7.12□□□□□ -1.27
PTPRB-206ENST00000548122 POLD1P28340 1107 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 NBPF6Q5VWK0 638 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 VSIG10Q8N0Z9 540 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 NBPF4Q96M43 638 aa7.12□□□□□ -1.27
PTPRB-206ENST00000548122 QRICH2Q9H0J4 1663 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 PSDA5PKW4 1024 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 PHF14O94880 888 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 CALD1Q05682 793 aaKnown RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 MAPK8IP2Q13387 824 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 EIF4A2Q14240 407 aaKnown RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 NGEFQ8N5V2 710 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 NAP1L5Q96NT1 182 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 CCNL1Q9UK58 526 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 CRB1P82279 1406 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 PPP2R1AP30153 589 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 EYA1Q99502 592 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 KIF1AQ12756 1690 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 MYBBP1AQ9BQG0 1328 aaKnown RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 TRPM1Q7Z4N2 1603 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 TMX4Q9H1E5 349 aaPredicted RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 RRP7AQ9Y3A4 280 aaKnown RBP7.11□□□□□ -1.27
PTPRB-206ENST00000548122 SSH2Q76I76 1423 aa7.11□□□□□ -1.27
PTPRB-206ENST00000548122 RBM25P49756 843 aaKnown RBP7.1□□□□□ -1.27
PTPRB-206ENST00000548122 MED1Q15648 1581 aaPredicted RBP7.1□□□□□ -1.27
PTPRB-206ENST00000548122 USP19O94966 1318 aa7.1□□□□□ -1.27
PTPRB-206ENST00000548122 NALCNQ8IZF0 1738 aa7.1□□□□□ -1.27
PTPRB-206ENST00000548122 CPSF1Q10570 1443 aaKnown RBP7.1□□□□□ -1.27
PTPRB-206ENST00000548122 BARGINQ6ZT62 677 aa7.1□□□□□ -1.27
PTPRB-206ENST00000548122 ATP6V1AP38606 617 aa7.09□□□□□ -1.27
PTPRB-206ENST00000548122 DEKP35659 375 aaKnown RBP7.09□□□□□ -1.27
PTPRB-206ENST00000548122 RIPK4P57078 832 aa7.09□□□□□ -1.27
PTPRB-206ENST00000548122 R3HDM1Q15032 1099 aaKnown RBP7.09□□□□□ -1.27
PTPRB-206ENST00000548122 RBM19Q9Y4C8 960 aaKnown RBP7.09□□□□□ -1.27
PTPRB-206ENST00000548122 AHDC1Q5TGY3 1603 aaPredicted RBP7.09□□□□□ -1.27
PTPRB-206ENST00000548122 KIAA1210Q9ULL0 1709 aa7.09□□□□□ -1.28
PTPRB-206ENST00000548122 STRCP1A6NGW2 1772 aa7.09□□□□□ -1.28
PTPRB-206ENST00000548122 GNAT3A8MTJ3 354 aa7.09□□□□□ -1.28
PTPRB-206ENST00000548122 EIF2S2P20042 333 aaKnown RBP7.09□□□□□ -1.28
PTPRB-206ENST00000548122 AAMPQ13685 434 aa7.09□□□□□ -1.28
PTPRB-206ENST00000548122 CHMP4AQ9BY43 222 aa7.09□□□□□ -1.28
PTPRB-206ENST00000548122 PXDNQ92626 1479 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 INSRP06213 1382 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 CPDO75976 1380 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 ZPR1O75312 459 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 STARD3NLO95772 234 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 UPF1Q92900 1129 aaKnown RBP eCLIP7.08□□□□□ -1.28
PTPRB-206ENST00000548122 TSPYL4Q9UJ04 414 aa7.08□□□□□ -1.28
PTPRB-206ENST00000548122 RTL1A6NKG5 1358 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 RFC4P35249 363 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 DCAF5Q96JK2 942 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 USP31Q70CQ4 1352 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 BTBD11A6QL63 1104 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 RGS17Q9UGC6 210 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-206ENST00000548122 OVOS2A0A0G2JMS6 1433 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 OVOS2A0A0J9YW53 1432 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 BLMP54132 1417 aaPredicted RBP7.07□□□□□ -1.28
PTPRB-206ENST00000548122 OVOS2Q6IE36 1432 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 IL27Q8NEV9 243 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 ITSN1Q15811 1721 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 ARHGEF28Q8N1W1 1705 aaKnown RBP7.07□□□□□ -1.28
PTPRB-206ENST00000548122 FMN2Q9NZ56 1722 aa7.07□□□□□ -1.28
PTPRB-206ENST00000548122 FCHSD2O94868 740 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 EZH2Q15910 746 aaKnown RBP7.06□□□□□ -1.28
PTPRB-206ENST00000548122 STK31Q9BXU1 1019 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 HNRNPUQ00839 825 aaKnown RBP eCLIP7.06□□□□□ -1.28
PTPRB-206ENST00000548122 GNPATO15228 680 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 TMEM132AQ24JP5 1023 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 BICDL1Q6ZP65 573 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 NECTIN2Q92692 538 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 PSMD1Q99460 953 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 PRKRIP1Q9H875 184 aaPredicted RBP7.06□□□□□ -1.28
PTPRB-206ENST00000548122 RTCBQ9Y3I0 505 aaKnown RBP7.06□□□□□ -1.28
PTPRB-206ENST00000548122 LRP6O75581 1613 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 FAM177BA6PVY3 158 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 AKAP4Q5JQC9 854 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 ATF5Q9Y2D1 282 aaPredicted RBP7.06□□□□□ -1.28
PTPRB-206ENST00000548122 KNDC1Q76NI1 1749 aa7.06□□□□□ -1.28
PTPRB-206ENST00000548122 IFT172Q9UG01 1749 aa7.05□□□□□ -1.28
PTPRB-206ENST00000548122 TXNRD1Q16881 649 aa7.05□□□□□ -1.28
PTPRB-206ENST00000548122 MARCH10Q8NA82 808 aaPredicted RBP7.05□□□□□ -1.28
PTPRB-206ENST00000548122 NFATC2IPQ8NCF5 419 aa7.05□□□□□ -1.28
PTPRB-206ENST00000548122 KCNQ2O43526 872 aa7.05□□□□□ -1.28
PTPRB-206ENST00000548122 RAD21O60216 631 aa7.05□□□□□ -1.28
PTPRB-206ENST00000548122 PNISRQ8TF01 805 aaKnown RBP7.05□□□□□ -1.28
PTPRB-206ENST00000548122 RUNDC1Q96C34 613 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms