RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 GOLGA2Q08379 1002 aa21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 THRAP3Q9Y2W1 955 aaKnown RBP21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 MAP3K19Q56UN5 1328 aa21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 ERBB3P21860 1342 aa21.64■■□□□ 1.06
CHMP1A-204ENST00000547687 ABCC6O95255 1503 aa21.64■■□□□ 1.05
CHMP1A-204ENST00000547687 DIAPH1O60610 1272 aaKnown RBP21.64■■□□□ 1.05
CHMP1A-204ENST00000547687 ANKRD24Q8TF21 1146 aa21.64■■□□□ 1.05
CHMP1A-204ENST00000547687 U2SURPO15042 1029 aaKnown RBP21.63■■□□□ 1.05
CHMP1A-204ENST00000547687 CCDC125Q86Z20 511 aa21.63■■□□□ 1.05
CHMP1A-204ENST00000547687 NLRP2Q9NX02 1062 aa21.63■■□□□ 1.05
CHMP1A-204ENST00000547687 RGPD1P0DJD0 1748 aa21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 SF3B2Q13435 895 aaKnown RBP21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 NGEFQ8N5V2 710 aa21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 CARD10Q9BWT7 1032 aa21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 TNS1Q9HBL0 1735 aaKnown RBP21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 DUSP27Q5VZP5 1158 aa21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 CCDC136Q96JN2 1154 aa21.62■■□□□ 1.05
CHMP1A-204ENST00000547687 TRIM37O94972 964 aa21.61■■□□□ 1.05
CHMP1A-204ENST00000547687 RUNDC1Q96C34 613 aa21.61■■□□□ 1.05
CHMP1A-204ENST00000547687 AMPHP49418 695 aa21.6■■□□□ 1.05
CHMP1A-204ENST00000547687 IP6K1Q92551 441 aa21.6■■□□□ 1.05
CHMP1A-204ENST00000547687 SLFN5Q08AF3 891 aa21.6■■□□□ 1.05
CHMP1A-204ENST00000547687 PEAK1Q9H792 1746 aa21.59■■□□□ 1.05
CHMP1A-204ENST00000547687 HOXC9P31274 260 aa21.59■■□□□ 1.05
CHMP1A-204ENST00000547687 DDB1Q16531 1140 aa21.59■■□□□ 1.05
CHMP1A-204ENST00000547687 KAT6BQ8WYB5 2073 aa21.58■■□□□ 1.05
CHMP1A-204ENST00000547687 FAM196AQ6ZSG2 479 aa21.58■■□□□ 1.04
CHMP1A-204ENST00000547687 SBF2Q86WG5 1849 aa21.58■■□□□ 1.04
CHMP1A-204ENST00000547687 DISP2A7MBM2 1401 aa21.57■■□□□ 1.04
CHMP1A-204ENST00000547687 EN1Q05925 392 aaPredicted RBP21.56■■□□□ 1.04
CHMP1A-204ENST00000547687 TRMT2AQ8IZ69 625 aaKnown RBP21.56■■□□□ 1.04
CHMP1A-204ENST00000547687 EXOC6Q8TAG9 804 aa21.56■■□□□ 1.04
CHMP1A-204ENST00000547687 IL13P35225 146 aa21.55■■□□□ 1.04
CHMP1A-204ENST00000547687 MARCH10Q8NA82 808 aaPredicted RBP21.55■■□□□ 1.04
CHMP1A-204ENST00000547687 FAM208AQ9UK61 1670 aaKnown RBP21.54■■□□□ 1.04
CHMP1A-204ENST00000547687 NEUROD2Q15784 382 aa21.54■■□□□ 1.04
CHMP1A-204ENST00000547687 PLEKHF1Q96S99 279 aa21.54■■□□□ 1.04
CHMP1A-204ENST00000547687 RRP7AQ9Y3A4 280 aaKnown RBP21.54■■□□□ 1.04
CHMP1A-204ENST00000547687 RBM19Q9Y4C8 960 aaKnown RBP21.54■■□□□ 1.04
CHMP1A-204ENST00000547687 PLIN1O60240 522 aa21.53■■□□□ 1.04
CHMP1A-204ENST00000547687 E9PSI1 815 aa21.53■■□□□ 1.04
CHMP1A-204ENST00000547687 BAG6P46379 1132 aa21.53■■□□□ 1.04
CHMP1A-204ENST00000547687 HSP90AB2PQ58FF8 381 aa21.53■■□□□ 1.04
CHMP1A-204ENST00000547687 PTF1AQ7RTS3 328 aa21.52■■□□□ 1.04
CHMP1A-204ENST00000547687 SPINK5Q9NQ38 1064 aaPredicted RBP21.52■■□□□ 1.04
CHMP1A-204ENST00000547687 OVOS2A0A0G2JMS6 1433 aa21.51■■□□□ 1.03
CHMP1A-204ENST00000547687 USHBP1Q8N6Y0 703 aa21.51■■□□□ 1.03
CHMP1A-204ENST00000547687 EXOC5O00471 708 aa21.51■■□□□ 1.03
CHMP1A-204ENST00000547687 FCHSD2O94868 740 aa21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 APBA3O96018 575 aa21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 IL2RBP14784 551 aa21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 WWC1Q8IX03 1113 aa21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 CDCA7Q9BWT1 371 aaPredicted RBP21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 RTL1A6NKG5 1358 aa21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 EZH2Q15910 746 aaKnown RBP21.5■■□□□ 1.03
CHMP1A-204ENST00000547687 HMOX1P09601 288 aa21.49■■□□□ 1.03
CHMP1A-204ENST00000547687 EIF4A2Q14240 407 aaKnown RBP21.49■■□□□ 1.03
CHMP1A-204ENST00000547687 RSPH6AQ9H0K4 717 aa21.49■■□□□ 1.03
CHMP1A-204ENST00000547687 TNS2Q63HR2 1409 aa21.49■■□□□ 1.03
CHMP1A-204ENST00000547687 NBPF6Q5VWK0 638 aa21.48■■□□□ 1.03
CHMP1A-204ENST00000547687 NBPF4Q96M43 638 aa21.48■■□□□ 1.03
CHMP1A-204ENST00000547687 PNNQ9H307 717 aaKnown RBP21.48■■□□□ 1.03
CHMP1A-204ENST00000547687 MAPK8IP3Q9UPT6 1336 aa21.48■■□□□ 1.03
CHMP1A-204ENST00000547687 PRKAR2BP31323 418 aa21.47■■□□□ 1.03
CHMP1A-204ENST00000547687 FLT4P35916 1363 aa21.47■■□□□ 1.03
CHMP1A-204ENST00000547687 CRBNQ96SW2 442 aa21.45■■□□□ 1.02
CHMP1A-204ENST00000547687 TMPOP42166 694 aaKnown RBP21.45■■□□□ 1.02
CHMP1A-204ENST00000547687 CCDC27Q2M243 656 aa21.45■■□□□ 1.02
CHMP1A-204ENST00000547687 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.45■■□□□ 1.02
CHMP1A-204ENST00000547687 MEGF6O75095 1541 aa21.44■■□□□ 1.02
CHMP1A-204ENST00000547687 SHANK3Q9BYB0 1731 aa21.44■■□□□ 1.02
CHMP1A-204ENST00000547687 NCBP3Q53F19 620 aaKnown RBP21.44■■□□□ 1.02
CHMP1A-204ENST00000547687 ACSBG1Q96GR2 724 aa21.44■■□□□ 1.02
CHMP1A-204ENST00000547687 CAMKK2Q96RR4 588 aa21.44■■□□□ 1.02
CHMP1A-204ENST00000547687 PSDA5PKW4 1024 aaPredicted RBP21.43■■□□□ 1.02
CHMP1A-204ENST00000547687 DDX54Q8TDD1 881 aaKnown RBP21.43■■□□□ 1.02
CHMP1A-204ENST00000547687 KCNQ2O43526 872 aa21.43■■□□□ 1.02
CHMP1A-204ENST00000547687 WDR63Q8IWG1 891 aa21.42■■□□□ 1.02
CHMP1A-204ENST00000547687 PHACTR3Q96KR7 559 aa21.42■■□□□ 1.02
CHMP1A-204ENST00000547687 C20orf194Q5TEA3 1177 aa21.41■■□□□ 1.02
CHMP1A-204ENST00000547687 KIF24Q5T7B8 1368 aa21.41■■□□□ 1.02
CHMP1A-204ENST00000547687 RREB1Q92766 1687 aa21.41■■□□□ 1.02
CHMP1A-204ENST00000547687 NEFMP07197 916 aa21.41■■□□□ 1.02
CHMP1A-204ENST00000547687 NUP188Q5SRE5 1749 aa21.4■■□□□ 1.02
CHMP1A-204ENST00000547687 SULT6B1Q6IMI4 303 aa21.4■■□□□ 1.02
CHMP1A-204ENST00000547687 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
CHMP1A-204ENST00000547687 RIPK4P57078 832 aa21.39■■□□□ 1.02
CHMP1A-204ENST00000547687 TRIM35Q9UPQ4 493 aa21.39■■□□□ 1.02
CHMP1A-204ENST00000547687 BCL11BQ9C0K0 894 aaPredicted RBP21.38■■□□□ 1.01
CHMP1A-204ENST00000547687 NHSQ6T4R5 1651 aa21.38■■□□□ 1.01
CHMP1A-204ENST00000547687 BTAF1O14981 1849 aa21.36■■□□□ 1.01
CHMP1A-204ENST00000547687 BCAR3O75815 825 aa21.36■■□□□ 1.01
CHMP1A-204ENST00000547687 R3HDM1Q15032 1099 aaKnown RBP21.36■■□□□ 1.01
CHMP1A-204ENST00000547687 BCL9O00512 1426 aa21.36■■□□□ 1.01
CHMP1A-204ENST00000547687 DOT1LQ8TEK3 1739 aa21.36■■□□□ 1.01
CHMP1A-204ENST00000547687 NFE2L2Q16236 605 aa21.35■■□□□ 1.01
CHMP1A-204ENST00000547687 ZCRB1Q8TBF4 217 aaKnown RBP21.35■■□□□ 1.01
CHMP1A-204ENST00000547687 RAPGEF4Q8WZA2 1011 aa21.35■■□□□ 1.01
CHMP1A-204ENST00000547687 EYA1Q99502 592 aa21.35■■□□□ 1.01
CHMP1A-204ENST00000547687 IGSF1Q8N6C5 1336 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms