RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PPP1R1BQ9UD71 204 aaPredicted RBP18.5■□□□□ 0.55
CPSF6-204ENST00000547486 ATF5Q9Y2D1 282 aaPredicted RBP18.5■□□□□ 0.55
CPSF6-204ENST00000547486 FLT4P35916 1363 aa18.5■□□□□ 0.55
CPSF6-204ENST00000547486 RGPD2P0DJD1 1756 aa18.5■□□□□ 0.55
CPSF6-204ENST00000547486 PTGER2P43116 358 aa18.49■□□□□ 0.55
CPSF6-204ENST00000547486 KCNQ4P56696 695 aa18.49■□□□□ 0.55
CPSF6-204ENST00000547486 RAPGEF4Q8WZA2 1011 aa18.49■□□□□ 0.55
CPSF6-204ENST00000547486 KIF24Q5T7B8 1368 aa18.48■□□□□ 0.55
CPSF6-204ENST00000547486 PPM1GO15355 546 aaPredicted RBP18.48■□□□□ 0.55
CPSF6-204ENST00000547486 ZNF827Q17R98 1081 aa18.48■□□□□ 0.55
CPSF6-204ENST00000547486 SMG6Q86US8 1419 aaKnown RBP18.48■□□□□ 0.55
CPSF6-204ENST00000547486 CGNL1Q0VF96 1302 aa18.48■□□□□ 0.55
CPSF6-204ENST00000547486 CASZ1Q86V15 1759 aa18.47■□□□□ 0.55
CPSF6-204ENST00000547486 NSD2O96028 1365 aa18.47■□□□□ 0.55
CPSF6-204ENST00000547486 BTAF1O14981 1849 aa18.46■□□□□ 0.55
CPSF6-204ENST00000547486 TATP17735 454 aaPredicted RBP18.46■□□□□ 0.55
CPSF6-204ENST00000547486 AKT1S1Q96B36 256 aa18.46■□□□□ 0.55
CPSF6-204ENST00000547486 POLKQ9UBT6 870 aa18.46■□□□□ 0.55
CPSF6-204ENST00000547486 KIF20BQ96Q89 1820 aa18.45■□□□□ 0.54
CPSF6-204ENST00000547486 SLC27A3Q5K4L6 730 aa18.45■□□□□ 0.54
CPSF6-204ENST00000547486 PANK3Q9H999 370 aa18.45■□□□□ 0.54
CPSF6-204ENST00000547486 WASHC2AQ641Q2 1341 aa18.45■□□□□ 0.54
CPSF6-204ENST00000547486 SGIP1Q9BQI5 828 aa18.44■□□□□ 0.54
CPSF6-204ENST00000547486 PAPPAQ13219 1627 aa18.43■□□□□ 0.54
CPSF6-204ENST00000547486 CYP27B1O15528 508 aa18.43■□□□□ 0.54
CPSF6-204ENST00000547486 TNNT2P45379 298 aaPredicted RBP18.43■□□□□ 0.54
CPSF6-204ENST00000547486 MTFR1LQ9H019 292 aa18.43■□□□□ 0.54
CPSF6-204ENST00000547486 SHANK3Q9BYB0 1731 aa18.43■□□□□ 0.54
CPSF6-204ENST00000547486 KAT6BQ8WYB5 2073 aa18.42■□□□□ 0.54
CPSF6-204ENST00000547486 EYA1Q99502 592 aa18.42■□□□□ 0.54
CPSF6-204ENST00000547486 PCDH11XQ9BZA7 1347 aa18.4■□□□□ 0.54
CPSF6-204ENST00000547486 PCDH11YQ9BZA8 1340 aa18.4■□□□□ 0.54
CPSF6-204ENST00000547486 NCAPD2Q15021 1401 aa18.39■□□□□ 0.53
CPSF6-204ENST00000547486 DOT1LQ8TEK3 1739 aa18.38■□□□□ 0.53
CPSF6-204ENST00000547486 EIF4A2Q14240 407 aaKnown RBP18.38■□□□□ 0.53
CPSF6-204ENST00000547486 FHDC1Q9C0D6 1143 aaPredicted RBP18.38■□□□□ 0.53
CPSF6-204ENST00000547486 TFCP2L1Q9NZI6 479 aa18.38■□□□□ 0.53
CPSF6-204ENST00000547486 CCNL1Q9UK58 526 aaPredicted RBP18.38■□□□□ 0.53
CPSF6-204ENST00000547486 PNPLA7Q6ZV29 1317 aa18.38■□□□□ 0.53
CPSF6-204ENST00000547486 MPRIPQ6WCQ1 1025 aa18.37■□□□□ 0.53
CPSF6-204ENST00000547486 SYT17Q9BSW7 474 aa18.37■□□□□ 0.53
CPSF6-204ENST00000547486 NKX1-1Q15270 411 aaPredicted RBP18.36■□□□□ 0.53
CPSF6-204ENST00000547486 ARXQ96QS3 562 aa18.36■□□□□ 0.53
CPSF6-204ENST00000547486 SPG7Q9UQ90 795 aa18.35■□□□□ 0.53
CPSF6-204ENST00000547486 SLC16A10Q8TF71 515 aa18.34■□□□□ 0.53
CPSF6-204ENST00000547486 PIGBQ92521 554 aa18.34■□□□□ 0.53
CPSF6-204ENST00000547486 ANKRD26Q9UPS8 1709 aa18.33■□□□□ 0.52
CPSF6-204ENST00000547486 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.33■□□□□ 0.522e-11■■■■□ 21.3
CPSF6-204ENST00000547486 MAP2P11137 1827 aaKnown RBP18.33■□□□□ 0.52
CPSF6-204ENST00000547486 MORC1Q86VD1 984 aa18.32■□□□□ 0.52
CPSF6-204ENST00000547486 LY75O60449 1722 aa18.32■□□□□ 0.52
CPSF6-204ENST00000547486 PALLDQ8WX93 1383 aa18.31■□□□□ 0.52
CPSF6-204ENST00000547486 DCAF8L1A6NGE4 600 aa18.31■□□□□ 0.52
CPSF6-204ENST00000547486 PHKG2P15735 406 aa18.31■□□□□ 0.52
CPSF6-204ENST00000547486 YY1P25490 414 aa18.31■□□□□ 0.52
CPSF6-204ENST00000547486 COL23A1Q86Y22 540 aaPredicted RBP18.31■□□□□ 0.52
CPSF6-204ENST00000547486 KIF7Q2M1P5 1343 aa18.3■□□□□ 0.52
CPSF6-204ENST00000547486 IGSF1Q8N6C5 1336 aa18.29■□□□□ 0.52
CPSF6-204ENST00000547486 IFNL2Q8IZJ0 200 aa18.29■□□□□ 0.52
CPSF6-204ENST00000547486 KNSTRNQ9Y448 316 aa18.29■□□□□ 0.52
CPSF6-204ENST00000547486 AMER1Q5JTC6 1135 aaPredicted RBP18.28■□□□□ 0.52
CPSF6-204ENST00000547486 SMARCC1Q92922 1105 aaPredicted RBP18.28■□□□□ 0.52
CPSF6-204ENST00000547486 PKD1L3Q7Z443 1732 aa18.28■□□□□ 0.52
CPSF6-204ENST00000547486 TOGARAM1Q9Y4F4 1720 aa18.27■□□□□ 0.52
CPSF6-204ENST00000547486 MSH5O43196 834 aa18.27■□□□□ 0.52
CPSF6-204ENST00000547486 AMIGO3Q86WK7 504 aa18.27■□□□□ 0.52
CPSF6-204ENST00000547486 ASAP1Q9ULH1 1129 aa18.27■□□□□ 0.52
CPSF6-204ENST00000547486 POLD1P28340 1107 aa18.26■□□□□ 0.51
CPSF6-204ENST00000547486 SMIM5Q71RC9 77 aa18.26■□□□□ 0.51
CPSF6-204ENST00000547486 AEBP1Q8IUX7 1158 aa18.26■□□□□ 0.51
CPSF6-204ENST00000547486 MAP3K5Q99683 1374 aa18.26■□□□□ 0.51
CPSF6-204ENST00000547486 PER1O15534 1290 aaPredicted RBP18.25■□□□□ 0.51
CPSF6-204ENST00000547486 TMOD3Q9NYL9 352 aa18.25■□□□□ 0.51
CPSF6-204ENST00000547486 UTRNP46939 3433 aa18.25■□□□□ 0.51
CPSF6-204ENST00000547486 QSER1Q2KHR3 1735 aa18.24■□□□□ 0.51
CPSF6-204ENST00000547486 TUBGCP6Q96RT7 1819 aa18.24■□□□□ 0.51
CPSF6-204ENST00000547486 LOC102724428A0A0B4J2F2 783 aa18.24■□□□□ 0.51
CPSF6-204ENST00000547486 SIK1P57059 783 aa18.24■□□□□ 0.51
CPSF6-204ENST00000547486 ATG3Q9NT62 314 aa18.24■□□□□ 0.51
CPSF6-204ENST00000547486 IL13P35225 146 aa18.23■□□□□ 0.51
CPSF6-204ENST00000547486 MSL1Q68DK7 614 aa18.23■□□□□ 0.51
CPSF6-204ENST00000547486 KLHL34Q8N239 644 aa18.23■□□□□ 0.51
CPSF6-204ENST00000547486 LINC00116Q8NCU8 138 aa18.23■□□□□ 0.51
CPSF6-204ENST00000547486 ITGB4P16144 1822 aa18.22■□□□□ 0.51
CPSF6-204ENST00000547486 ITPK1Q13572 414 aa18.22■□□□□ 0.51
CPSF6-204ENST00000547486 PLEKHO1Q53GL0 409 aaPredicted RBP18.22■□□□□ 0.51
CPSF6-204ENST00000547486 SULT6B1Q6IMI4 303 aa18.22■□□□□ 0.51
CPSF6-204ENST00000547486 NLGN2Q8NFZ4 835 aa18.22■□□□□ 0.51
CPSF6-204ENST00000547486 AK7Q96M32 723 aa18.21■□□□□ 0.51
CPSF6-204ENST00000547486 COL24A1Q17RW2 1714 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 PLEKHG2Q9H7P9 1386 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 ERVV-2B6SEH9 535 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 HMGB2P26583 209 aaKnown RBP18.2■□□□□ 0.5
CPSF6-204ENST00000547486 AMOTQ4VCS5 1084 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 ZNF530Q6P9A1 599 aaPredicted RBP18.2■□□□□ 0.5
CPSF6-204ENST00000547486 FLAD1Q8NFF5 587 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 DCAF5Q96JK2 942 aa18.2■□□□□ 0.5
CPSF6-204ENST00000547486 C5P01031 1676 aa18.19■□□□□ 0.5
CPSF6-204ENST00000547486 PHF14O94880 888 aa18.19■□□□□ 0.5
CPSF6-204ENST00000547486 ATP6V1AP38606 617 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms