RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SLC4A10Q6U841 1118 aa14.03□□□□□ -0.16
CUX1-212ENST00000547394 PIK3R4Q99570 1358 aa14.03□□□□□ -0.16
CUX1-212ENST00000547394 SIRT2Q8IXJ6 389 aa14.02□□□□□ -0.16
CUX1-212ENST00000547394 ARHGEF10O15013 1369 aa14.01□□□□□ -0.17
CUX1-212ENST00000547394 ANKARQ7Z5J8 1434 aa14.01□□□□□ -0.17
CUX1-212ENST00000547394 USP19O94966 1318 aa14.01□□□□□ -0.17
CUX1-212ENST00000547394 ZC3H6P61129 1189 aaKnown RBP14.01□□□□□ -0.17
CUX1-212ENST00000547394 ANKRD45Q5TZF3 282 aa14.01□□□□□ -0.17
CUX1-212ENST00000547394 IL17REQ8NFR9 667 aa14.01□□□□□ -0.17
CUX1-212ENST00000547394 CRB1P82279 1406 aa14□□□□□ -0.17
CUX1-212ENST00000547394 HDAC1Q13547 482 aaPredicted RBP14□□□□□ -0.17
CUX1-212ENST00000547394 DNAJC5Q9H3Z4 198 aa14□□□□□ -0.17
CUX1-212ENST00000547394 FMN2Q9NZ56 1722 aa14□□□□□ -0.17
CUX1-212ENST00000547394 CABLES1Q8TDN4 633 aa14□□□□□ -0.17
CUX1-212ENST00000547394 LGR6Q9HBX8 967 aa13.99□□□□□ -0.17
CUX1-212ENST00000547394 ADAMTSL3P82987 1691 aa13.99□□□□□ -0.17
CUX1-212ENST00000547394 ABCC4O15439 1325 aa13.99□□□□□ -0.17
CUX1-212ENST00000547394 ADGRL3Q9HAR2 1447 aa13.99□□□□□ -0.17
CUX1-212ENST00000547394 CHD2O14647 1828 aaKnown RBP13.99□□□□□ -0.17
CUX1-212ENST00000547394 GNAT3A8MTJ3 354 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 ZNF428Q96B54 188 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 AXIN2Q9Y2T1 843 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 GCP02774 474 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 MFAP1P55081 439 aaKnown RBP13.98□□□□□ -0.17
CUX1-212ENST00000547394 AAMPQ13685 434 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 SMC5Q8IY18 1101 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 GAS2L2Q8NHY3 880 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 MEIS3Q99687 375 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 KDRP35968 1356 aa13.98□□□□□ -0.17
CUX1-212ENST00000547394 DAXXQ9UER7 740 aaPredicted RBP13.97□□□□□ -0.17
CUX1-212ENST00000547394 RGPD1P0DJD0 1748 aa13.97□□□□□ -0.17
CUX1-212ENST00000547394 KRT28Q7Z3Y7 464 aa13.97□□□□□ -0.17
CUX1-212ENST00000547394 KCNQ3O43525 872 aa13.97□□□□□ -0.17
CUX1-212ENST00000547394 BRPF1P55201 1214 aaPredicted RBP13.97□□□□□ -0.17
CUX1-212ENST00000547394 MPRIPQ6WCQ1 1025 aa13.97□□□□□ -0.17
CUX1-212ENST00000547394 API5Q9BZZ5 524 aaKnown RBP13.97□□□□□ -0.17
CUX1-212ENST00000547394 IP6K1Q92551 441 aa13.96□□□□□ -0.17
CUX1-212ENST00000547394 ARHGAP45Q92619 1136 aa13.96□□□□□ -0.17
CUX1-212ENST00000547394 ANXA1P04083 346 aa13.96□□□□□ -0.18
CUX1-212ENST00000547394 EIF2S2P20042 333 aaKnown RBP13.96□□□□□ -0.18
CUX1-212ENST00000547394 CHD1LQ86WJ1 897 aa13.96□□□□□ -0.18
CUX1-212ENST00000547394 SPRYD3Q8NCJ5 442 aa13.96□□□□□ -0.18
CUX1-212ENST00000547394 MSH6P52701 1360 aa13.95□□□□□ -0.18
CUX1-212ENST00000547394 C16orf71Q8IYS4 520 aaPredicted RBP13.95□□□□□ -0.18
CUX1-212ENST00000547394 MARF1Q9Y4F3 1742 aaKnown RBP13.95□□□□□ -0.18
CUX1-212ENST00000547394 NUCB1Q02818 461 aa13.95□□□□□ -0.18
CUX1-212ENST00000547394 SMARCA5O60264 1052 aaPredicted RBP13.94□□□□□ -0.18
CUX1-212ENST00000547394 NWD1Q149M9 1564 aa13.94□□□□□ -0.18
CUX1-212ENST00000547394 RGS12O14924 1447 aa13.94□□□□□ -0.18
CUX1-212ENST00000547394 OTUD7AQ8TE49 926 aaPredicted RBP13.93□□□□□ -0.18
CUX1-212ENST00000547394 DDRGK1Q96HY6 314 aa13.93□□□□□ -0.18
CUX1-212ENST00000547394 CHRNA2Q15822 529 aa13.93□□□□□ -0.18
CUX1-212ENST00000547394 FKBP5Q13451 457 aaPredicted RBP13.93□□□□□ -0.18
CUX1-212ENST00000547394 ZNF530Q6P9A1 599 aaPredicted RBP13.93□□□□□ -0.18
CUX1-212ENST00000547394 ANKRD24Q8TF21 1146 aa13.93□□□□□ -0.18
CUX1-212ENST00000547394 TMEM94Q12767 1356 aa13.92□□□□□ -0.18
CUX1-212ENST00000547394 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
CUX1-212ENST00000547394 ATF3P18847 181 aa13.92□□□□□ -0.18
CUX1-212ENST00000547394 C19orf44Q9H6X5 657 aa13.92□□□□□ -0.18
CUX1-212ENST00000547394 PHAXQ9H814 394 aaKnown RBP13.92□□□□□ -0.18
CUX1-212ENST00000547394 ZNF142P52746 1687 aaPredicted RBP13.91□□□□□ -0.18
CUX1-212ENST00000547394 SLKQ9H2G2 1235 aaPredicted RBP13.91□□□□□ -0.18
CUX1-212ENST00000547394 TAF7Q15545 349 aaPredicted RBP13.91□□□□□ -0.18
CUX1-212ENST00000547394 ARHGEF25Q86VW2 580 aa13.91□□□□□ -0.18
CUX1-212ENST00000547394 KIAA0232Q92628 1395 aa13.9□□□□□ -0.18
CUX1-212ENST00000547394 STK31Q9BXU1 1019 aa13.9□□□□□ -0.18
CUX1-212ENST00000547394 PRAMEF22A3QJZ6 481 aa13.9□□□□□ -0.18
CUX1-212ENST00000547394 INTS3Q68E01 1043 aaKnown RBP13.9□□□□□ -0.18
CUX1-212ENST00000547394 KCNH5Q8NCM2 988 aa13.9□□□□□ -0.18
CUX1-212ENST00000547394 LTN1O94822 1766 aa13.9□□□□□ -0.18
CUX1-212ENST00000547394 FLIIQ13045 1269 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 NFAT5O94916 1531 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 RGPD2P0DJD1 1756 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 HDGFL1Q5TGJ6 251 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 CEP85Q6P2H3 762 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 NLRP2Q9NX02 1062 aa13.89□□□□□ -0.19
CUX1-212ENST00000547394 C1orf167Q5SNV9 1468 aa13.88□□□□□ -0.19
CUX1-212ENST00000547394 TSHZ3Q63HK5 1081 aa13.88□□□□□ -0.19
CUX1-212ENST00000547394 UPF2Q9HAU5 1272 aaKnown RBP13.88□□□□□ -0.19
CUX1-212ENST00000547394 RTL5Q5HYW3 569 aaPredicted RBP13.88□□□□□ -0.19
CUX1-212ENST00000547394 TBC1D32Q96NH3 1257 aa13.87□□□□□ -0.19
CUX1-212ENST00000547394 TEFQ10587 303 aa13.87□□□□□ -0.19
CUX1-212ENST00000547394 EXOC6BQ9Y2D4 811 aa13.87□□□□□ -0.19
CUX1-212ENST00000547394 RTL1A6NKG5 1358 aa13.87□□□□□ -0.19
CUX1-212ENST00000547394 PXDNQ92626 1479 aa13.87□□□□□ -0.19
CUX1-212ENST00000547394 CCDC30Q5VVM6 783 aa13.86□□□□□ -0.19
CUX1-212ENST00000547394 GCC1Q96CN9 775 aa13.86□□□□□ -0.19
CUX1-212ENST00000547394 C22orf23Q9BZE7 217 aa13.86□□□□□ -0.19
CUX1-212ENST00000547394 CHPF2Q9P2E5 772 aa13.86□□□□□ -0.19
CUX1-212ENST00000547394 PTPRCP08575 1304 aa13.86□□□□□ -0.19
CUX1-212ENST00000547394 BTBD11A6QL63 1104 aa13.85□□□□□ -0.19
CUX1-212ENST00000547394 CSB-PGBD3P0DP91 1061 aa13.85□□□□□ -0.19
CUX1-212ENST00000547394 ATP10DQ9P241 1426 aa13.85□□□□□ -0.19
CUX1-212ENST00000547394 SLC39A6Q13433 755 aa13.85□□□□□ -0.19
CUX1-212ENST00000547394 ANKRD44Q8N8A2 993 aa13.85□□□□□ -0.19
CUX1-212ENST00000547394 GSPT1P15170 499 aaKnown RBP13.84□□□□□ -0.19
CUX1-212ENST00000547394 HAP1P54257 671 aaPredicted RBP13.84□□□□□ -0.19
CUX1-212ENST00000547394 C1orf141Q5JVX7 400 aa13.84□□□□□ -0.19
CUX1-212ENST00000547394 PNMA6EA0A0J9YXQ4 647 aa13.84□□□□□ -0.19
CUX1-212ENST00000547394 HTATSF1O43719 755 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms