RNA–Protein interactions for RNA: ENST00000546803.5

CCDC38-203, Transcript of coiled-coil domain containing 38, humanhuman

TSL 4

Gene CCDC38, Length 511 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-203ENST00000546803 NUDCQ9Y266 331 aa22.58■■□□□ 1.21
CCDC38-203ENST00000546803 COL3A1P02461 1466 aaPredicted RBP22.58■■□□□ 1.2
CCDC38-203ENST00000546803 DDX54Q8TDD1 881 aaKnown RBP22.57■■□□□ 1.2
CCDC38-203ENST00000546803 WNK3Q9BYP7 1800 aa22.57■■□□□ 1.2
CCDC38-203ENST00000546803 MYBBP1AQ9BQG0 1328 aaKnown RBP22.57■■□□□ 1.2
CCDC38-203ENST00000546803 KDRP35968 1356 aa22.56■■□□□ 1.2
CCDC38-203ENST00000546803 SF3B2Q13435 895 aaKnown RBP22.56■■□□□ 1.2
CCDC38-203ENST00000546803 SPG7Q9UQ90 795 aa22.56■■□□□ 1.2
CCDC38-203ENST00000546803 AEBP1Q8IUX7 1158 aa22.55■■□□□ 1.2
CCDC38-203ENST00000546803 PCDH11XQ9BZA7 1347 aa22.55■■□□□ 1.2
CCDC38-203ENST00000546803 PCDH11YQ9BZA8 1340 aa22.55■■□□□ 1.2
CCDC38-203ENST00000546803 U2SURPO15042 1029 aaKnown RBP22.54■■□□□ 1.2
CCDC38-203ENST00000546803 RGPD2P0DJD1 1756 aa22.53■■□□□ 1.2
CCDC38-203ENST00000546803 TRIM37O94972 964 aa22.52■■□□□ 1.2
CCDC38-203ENST00000546803 AMOTQ4VCS5 1084 aa22.52■■□□□ 1.2
CCDC38-203ENST00000546803 PLEKHO1Q53GL0 409 aaPredicted RBP22.52■■□□□ 1.2
CCDC38-203ENST00000546803 HMOX1P09601 288 aa22.51■■□□□ 1.19
CCDC38-203ENST00000546803 RGPD1P0DJD0 1748 aa22.49■■□□□ 1.19
CCDC38-203ENST00000546803 CYP27B1O15528 508 aa22.49■■□□□ 1.19
CCDC38-203ENST00000546803 BCL11BQ9C0K0 894 aaPredicted RBP22.49■■□□□ 1.19
CCDC38-203ENST00000546803 ANP32CO43423 234 aa22.48■■□□□ 1.19
CCDC38-203ENST00000546803 BAG6P46379 1132 aa22.48■■□□□ 1.19
CCDC38-203ENST00000546803 IFNL2Q8IZJ0 200 aa22.48■■□□□ 1.19
CCDC38-203ENST00000546803 U2AF1L5P0DN76 240 aaPredicted RBP22.47■■□□□ 1.19
CCDC38-203ENST00000546803 U2AF1Q01081 240 aaKnown RBP eCLIP22.47■■□□□ 1.19
CCDC38-203ENST00000546803 NKX1-1Q15270 411 aaPredicted RBP22.46■■□□□ 1.19
CCDC38-203ENST00000546803 FCHSD2O94868 740 aa22.45■■□□□ 1.18
CCDC38-203ENST00000546803 PHKG2P15735 406 aa22.45■■□□□ 1.18
CCDC38-203ENST00000546803 APBA3O96018 575 aa22.44■■□□□ 1.18
CCDC38-203ENST00000546803 HSP90AB1P08238 724 aaKnown RBP22.44■■□□□ 1.18
CCDC38-203ENST00000546803 ZNF530Q6P9A1 599 aaPredicted RBP22.44■■□□□ 1.18
CCDC38-203ENST00000546803 ACSBG1Q96GR2 724 aa22.44■■□□□ 1.18
CCDC38-203ENST00000546803 RSPH6AQ9H0K4 717 aa22.43■■□□□ 1.18
CCDC38-203ENST00000546803 KCNQ2O43526 872 aa22.42■■□□□ 1.18
CCDC38-203ENST00000546803 C1orf141Q5JVX7 400 aa22.42■■□□□ 1.18
CCDC38-203ENST00000546803 DEFB132Q7Z7B7 95 aa22.42■■□□□ 1.18
CCDC38-203ENST00000546803 PKD1L3Q7Z443 1732 aa22.42■■□□□ 1.18
CCDC38-203ENST00000546803 PRKAR2BP31323 418 aa22.41■■□□□ 1.18
CCDC38-203ENST00000546803 PRIM1P49642 420 aaKnown RBP22.41■■□□□ 1.18
CCDC38-203ENST00000546803 PLSCR1O15162 318 aa22.4■■□□□ 1.18
CCDC38-203ENST00000546803 PTF1AQ7RTS3 328 aa22.4■■□□□ 1.18
CCDC38-203ENST00000546803 PNNQ9H307 717 aaKnown RBP22.4■■□□□ 1.18
CCDC38-203ENST00000546803 AKAP4Q5JQC9 854 aa22.39■■□□□ 1.17
CCDC38-203ENST00000546803 SYTL4Q96C24 671 aaPredicted RBP22.39■■□□□ 1.17
CCDC38-203ENST00000546803 DCAF5Q96JK2 942 aa22.39■■□□□ 1.17
CCDC38-203ENST00000546803 SHANK3Q9BYB0 1731 aa22.38■■□□□ 1.17
CCDC38-203ENST00000546803 EN1Q05925 392 aaPredicted RBP22.38■■□□□ 1.17
CCDC38-203ENST00000546803 MTHFSDQ2M296 383 aaKnown RBP22.38■■□□□ 1.17
CCDC38-203ENST00000546803 GAS2L2Q8NHY3 880 aa22.38■■□□□ 1.17
CCDC38-203ENST00000546803 CAMKK2Q96RR4 588 aa22.37■■□□□ 1.17
CCDC38-203ENST00000546803 NEFMP07197 916 aa22.36■■□□□ 1.17
CCDC38-203ENST00000546803 ERVV-2B6SEH9 535 aa22.35■■□□□ 1.17
CCDC38-203ENST00000546803 WDR43Q15061 677 aaKnown RBP eCLIP22.35■■□□□ 1.17
CCDC38-203ENST00000546803 PHACTR3Q96KR7 559 aa22.35■■□□□ 1.17
CCDC38-203ENST00000546803 EZH2Q15910 746 aaKnown RBP22.34■■□□□ 1.17
CCDC38-203ENST00000546803 NHSQ6T4R5 1651 aa22.33■■□□□ 1.16
CCDC38-203ENST00000546803 EP400Q96L91 3159 aa22.32■■□□□ 1.16
CCDC38-203ENST00000546803 TNS1Q9HBL0 1735 aaKnown RBP22.32■■□□□ 1.16
CCDC38-203ENST00000546803 MPRIPQ6WCQ1 1025 aa22.32■■□□□ 1.16
CCDC38-203ENST00000546803 PLEKHF1Q96S99 279 aa22.32■■□□□ 1.16
CCDC38-203ENST00000546803 TMOD3Q9NYL9 352 aa22.32■■□□□ 1.16
CCDC38-203ENST00000546803 KDM6AO15550 1401 aaPredicted RBP22.31■■□□□ 1.16
CCDC38-203ENST00000546803 SBF2Q86WG5 1849 aa22.3■■□□□ 1.16
CCDC38-203ENST00000546803 GNAT3A8MTJ3 354 aa22.3■■□□□ 1.16
CCDC38-203ENST00000546803 CABP4P57796 275 aa22.3■■□□□ 1.16
CCDC38-203ENST00000546803 PIGBQ92521 554 aa22.3■■□□□ 1.16
CCDC38-203ENST00000546803 MAP3K5Q99683 1374 aa22.29■■□□□ 1.16
CCDC38-203ENST00000546803 SMARCC1Q92922 1105 aaPredicted RBP22.29■■□□□ 1.16
CCDC38-203ENST00000546803 MAPK8IP3Q9UPT6 1336 aa22.29■■□□□ 1.16
CCDC38-203ENST00000546803 RNMTO43148 476 aaKnown RBP22.28■■□□□ 1.16
CCDC38-203ENST00000546803 TXNRD1Q16881 649 aa22.28■■□□□ 1.16
CCDC38-203ENST00000546803 MRS2Q9HD23 443 aa22.28■■□□□ 1.16
CCDC38-203ENST00000546803 ADAMTS8Q9UP79 889 aa22.28■■□□□ 1.16
CCDC38-203ENST00000546803 CCDC184Q52MB2 194 aa22.27■■□□□ 1.16
CCDC38-203ENST00000546803 PROM2Q8N271 834 aa22.27■■□□□ 1.16
CCDC38-203ENST00000546803 DOT1LQ8TEK3 1739 aa22.26■■□□□ 1.15
CCDC38-203ENST00000546803 HTATSF1O43719 755 aaKnown RBP22.26■■□□□ 1.15
CCDC38-203ENST00000546803 LGR6Q9HBX8 967 aa22.26■■□□□ 1.15
CCDC38-203ENST00000546803 SLC27A3Q5K4L6 730 aa22.25■■□□□ 1.15
CCDC38-203ENST00000546803 NFE2L2Q16236 605 aa22.24■■□□□ 1.15
CCDC38-203ENST00000546803 NFATC2IPQ8NCF5 419 aa22.24■■□□□ 1.15
CCDC38-203ENST00000546803 RTF1Q92541 710 aaKnown RBP22.24■■□□□ 1.15
CCDC38-203ENST00000546803 RUNDC1Q96C34 613 aa22.24■■□□□ 1.15
CCDC38-203ENST00000546803 SLC52A2Q9HAB3 445 aa22.24■■□□□ 1.15
CCDC38-203ENST00000546803 HMGB2P26583 209 aaKnown RBP22.23■■□□□ 1.15
CCDC38-203ENST00000546803 IL17REQ8NFR9 667 aa22.23■■□□□ 1.15
CCDC38-203ENST00000546803 PNISRQ8TF01 805 aaKnown RBP22.23■■□□□ 1.15
CCDC38-203ENST00000546803 PALLDQ8WX93 1383 aa22.23■■□□□ 1.15
CCDC38-203ENST00000546803 ATG3Q9NT62 314 aa22.22■■□□□ 1.15
CCDC38-203ENST00000546803 ASAP1Q9ULH1 1129 aa22.22■■□□□ 1.15
CCDC38-203ENST00000546803 TOGARAM1Q9Y4F4 1720 aa22.22■■□□□ 1.15
CCDC38-203ENST00000546803 NBPF14Q5TI25 921 aa22.21■■□□□ 1.15
CCDC38-203ENST00000546803 DIEXFQ68CQ4 756 aaKnown RBP22.21■■□□□ 1.15
CCDC38-203ENST00000546803 RGPD3A6NKT7 1758 aaPredicted RBP22.2■■□□□ 1.14
CCDC38-203ENST00000546803 RGPD4Q7Z3J3 1758 aa22.2■■□□□ 1.14
CCDC38-203ENST00000546803 BTAF1O14981 1849 aa22.2■■□□□ 1.14
CCDC38-203ENST00000546803 TEFQ10587 303 aa22.2■■□□□ 1.14
CCDC38-203ENST00000546803 CCDC146Q8IYE0 955 aa22.2■■□□□ 1.14
CCDC38-203ENST00000546803 CEMIPQ8WUJ3 1361 aa22.2■■□□□ 1.14
CCDC38-203ENST00000546803 CCNL1Q9UK58 526 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms