RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RICTORQ6R327 1708 aa18.61■□□□□ 0.57
USP28-214ENST00000545540 BRPF1P55201 1214 aaPredicted RBP18.61■□□□□ 0.57
USP28-214ENST00000545540 TTC21BQ7Z4L5 1316 aa18.61■□□□□ 0.57
USP28-214ENST00000545540 EDC4Q6P2E9 1401 aaKnown RBP18.61■□□□□ 0.57
USP28-214ENST00000545540 C14orf37Q86TY3 774 aa18.61■□□□□ 0.57
USP28-214ENST00000545540 GBP4Q96PP9 640 aa18.61■□□□□ 0.57
USP28-214ENST00000545540 PTCH1Q13635 1447 aa18.6■□□□□ 0.57
USP28-214ENST00000545540 DDX49Q9Y6V7 483 aaKnown RBP18.6■□□□□ 0.57
USP28-214ENST00000545540 CPSF1Q10570 1443 aaKnown RBP18.6■□□□□ 0.57
USP28-214ENST00000545540 ROBO2Q9HCK4 1378 aa18.6■□□□□ 0.57
USP28-214ENST00000545540 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.6■□□□□ 0.57
USP28-214ENST00000545540 LTKP29376 864 aa18.59■□□□□ 0.57
USP28-214ENST00000545540 CHL1O00533 1208 aa18.59■□□□□ 0.57
USP28-214ENST00000545540 ANKRD44Q8N8A2 993 aa18.59■□□□□ 0.57
USP28-214ENST00000545540 ERBB4Q15303 1308 aa18.58■□□□□ 0.57
USP28-214ENST00000545540 MAP3K19Q56UN5 1328 aa18.58■□□□□ 0.57
USP28-214ENST00000545540 USHBP1Q8N6Y0 703 aa18.58■□□□□ 0.57
USP28-214ENST00000545540 USP26Q9BXU7 913 aa18.58■□□□□ 0.57
USP28-214ENST00000545540 MRE11P49959 708 aa18.58■□□□□ 0.56
USP28-214ENST00000545540 RTF1Q92541 710 aaKnown RBP18.58■□□□□ 0.56
USP28-214ENST00000545540 INTS3Q68E01 1043 aaKnown RBP18.57■□□□□ 0.56
USP28-214ENST00000545540 CHMP4BQ9H444 224 aaKnown RBP18.57■□□□□ 0.56
USP28-214ENST00000545540 MAP4K4O95819 1239 aaPredicted RBP18.57■□□□□ 0.56
USP28-214ENST00000545540 NGDNQ8NEJ9 315 aaKnown RBP18.57■□□□□ 0.56
USP28-214ENST00000545540 AMPHP49418 695 aa18.56■□□□□ 0.56
USP28-214ENST00000545540 RILPL2Q969X0 211 aa18.56■□□□□ 0.56
USP28-214ENST00000545540 KIF20BQ96Q89 1820 aa18.56■□□□□ 0.56
USP28-214ENST00000545540 BAG4O95429 457 aaKnown RBP18.56■□□□□ 0.56
USP28-214ENST00000545540 ATP7BP35670 1465 aa18.55■□□□□ 0.56
USP28-214ENST00000545540 CAVIN1Q6NZI2 390 aaKnown RBP18.55■□□□□ 0.56
USP28-214ENST00000545540 RBM27Q9P2N5 1060 aaKnown RBP18.55■□□□□ 0.56
USP28-214ENST00000545540 PIK3R4Q99570 1358 aa18.55■□□□□ 0.56
USP28-214ENST00000545540 FKBP5Q13451 457 aaPredicted RBP18.55■□□□□ 0.56
USP28-214ENST00000545540 RTL1A6NKG5 1358 aa18.55■□□□□ 0.56
USP28-214ENST00000545540 LARP6Q9BRS8 491 aaKnown RBP18.54■□□□□ 0.56
USP28-214ENST00000545540 IL1RAPL2Q9NP60 686 aa18.54■□□□□ 0.56
USP28-214ENST00000545540 TRIM6-TRIM34B2RNG4 842 aa18.54■□□□□ 0.56
USP28-214ENST00000545540 CLTCQ00610 1675 aaKnown RBP18.54■□□□□ 0.56
USP28-214ENST00000545540 NCOA3Q9Y6Q9 1424 aa18.54■□□□□ 0.56
USP28-214ENST00000545540 PNMA6EA0A0J9YXQ4 647 aa18.54■□□□□ 0.56
USP28-214ENST00000545540 PRPF40AO75400 957 aaKnown RBP18.53■□□□□ 0.56
USP28-214ENST00000545540 PRKCSHP14314 528 aaPredicted RBP18.53■□□□□ 0.56
USP28-214ENST00000545540 EYA1Q99502 592 aa18.53■□□□□ 0.56
USP28-214ENST00000545540 ANKRD26Q9UPS8 1709 aa18.53■□□□□ 0.56
USP28-214ENST00000545540 DLG5Q8TDM6 1919 aa18.52■□□□□ 0.56
USP28-214ENST00000545540 TRIM44Q96DX7 344 aaPredicted RBP18.52■□□□□ 0.56
USP28-214ENST00000545540 KNDC1Q76NI1 1749 aa18.52■□□□□ 0.55
USP28-214ENST00000545540 NEK4P51957 841 aa18.52■□□□□ 0.55
USP28-214ENST00000545540 ATP10DQ9P241 1426 aa18.52■□□□□ 0.55
USP28-214ENST00000545540 CDK12Q9NYV4 1490 aaPredicted RBP18.52■□□□□ 0.55
USP28-214ENST00000545540 NLRP6P59044 892 aa18.51■□□□□ 0.55
USP28-214ENST00000545540 ANXA1P04083 346 aa18.51■□□□□ 0.55
USP28-214ENST00000545540 EIF2S2P20042 333 aaKnown RBP18.51■□□□□ 0.55
USP28-214ENST00000545540 RPAP2Q8IXW5 612 aaPredicted RBP18.51■□□□□ 0.55
USP28-214ENST00000545540 UPF3BQ9BZI7 483 aaKnown RBP18.51■□□□□ 0.55
USP28-214ENST00000545540 RGS12O14924 1447 aa18.51■□□□□ 0.55
USP28-214ENST00000545540 AATKQ6ZMQ8 1374 aa18.5■□□□□ 0.55
USP28-214ENST00000545540 PALD1Q9ULE6 856 aa18.5■□□□□ 0.55
USP28-214ENST00000545540 PDE1AP54750 535 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 RABEP1Q15276 862 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 UNC5CLQ8IV45 518 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 CIZ1Q9ULV3 898 aaPredicted RBP18.49■□□□□ 0.55
USP28-214ENST00000545540 NSFL1CQ9UNZ2 370 aaKnown RBP18.49■□□□□ 0.55
USP28-214ENST00000545540 AMOTL2Q9Y2J4 779 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 NUTM1Q86Y26 1132 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 ANO2Q9NQ90 1003 aa18.49■□□□□ 0.55
USP28-214ENST00000545540 GOLGA6L22H0YM25 854 aa18.48■□□□□ 0.55
USP28-214ENST00000545540 ESPNB1AK53 854 aa18.48■□□□□ 0.55
USP28-214ENST00000545540 PHAXQ9H814 394 aaKnown RBP18.48■□□□□ 0.55
USP28-214ENST00000545540 LRRFIP2Q9Y608 721 aaKnown RBP18.48■□□□□ 0.55
USP28-214ENST00000545540 CASC1Q6TDU7 716 aa18.47■□□□□ 0.55
USP28-214ENST00000545540 MPNDQ8N594 471 aa18.47■□□□□ 0.55
USP28-214ENST00000545540 STK31Q9BXU1 1019 aa18.47■□□□□ 0.55
USP28-214ENST00000545540 GDPD2Q9HCC8 539 aa18.47■□□□□ 0.55
USP28-214ENST00000545540 IL25Q9H293 177 aa18.47■□□□□ 0.55
USP28-214ENST00000545540 NASPP49321 788 aaPredicted RBP18.46■□□□□ 0.55
USP28-214ENST00000545540 FLIIQ13045 1269 aa18.46■□□□□ 0.55
USP28-214ENST00000545540 ZDHHC9Q9Y397 364 aa18.46■□□□□ 0.55
USP28-214ENST00000545540 CDC42BPGQ6DT37 1551 aa18.46■□□□□ 0.55
USP28-214ENST00000545540 ERC2O15083 957 aa18.45■□□□□ 0.54
USP28-214ENST00000545540 DLC1Q96QB1 1528 aa18.45■□□□□ 0.54
USP28-214ENST00000545540 GNAI2P04899 355 aa18.45■□□□□ 0.54
USP28-214ENST00000545540 RNF214Q8ND24 703 aa18.45■□□□□ 0.54
USP28-214ENST00000545540 ST18O60284 1047 aa18.44■□□□□ 0.54
USP28-214ENST00000545540 HDGFP51858 240 aaKnown RBP18.44■□□□□ 0.54
USP28-214ENST00000545540 HMMRO75330 724 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 IL17REQ8NFR9 667 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 DDX54Q8TDD1 881 aaKnown RBP18.43■□□□□ 0.54
USP28-214ENST00000545540 LMBRD1Q9NUN5 540 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 RIMBP3CA6NJZ7 1639 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 RIMBP3BA6NNM3 1639 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 RIMBP3Q9UFD9 1639 aa18.43■□□□□ 0.54
USP28-214ENST00000545540 RIMS1Q86UR5 1692 aaKnown RBP18.43■□□□□ 0.54
USP28-214ENST00000545540 PRIM1P49642 420 aaKnown RBP18.42■□□□□ 0.54
USP28-214ENST00000545540 PTPRCP08575 1304 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 CRB1P82279 1406 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 REC8O95072 547 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 SKOR2Q2VWA4 1001 aaPredicted RBP18.42■□□□□ 0.54
USP28-214ENST00000545540 GPT2Q8TD30 523 aa18.42■□□□□ 0.54
USP28-214ENST00000545540 TNRQ92752 1358 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms