RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 AMOTL2Q9Y2J4 779 aa15.21■□□□□ 0.03
CHD4-211ENST00000544484 ADGRL1O94910 1474 aa15.21■□□□□ 0.03
CHD4-211ENST00000544484 ANKRD1Q15327 319 aa15.21■□□□□ 0.02
CHD4-211ENST00000544484 PDRG1Q9NUG6 133 aa15.21■□□□□ 0.02
CHD4-211ENST00000544484 MPRIPQ6WCQ1 1025 aa15.21■□□□□ 0.02
CHD4-211ENST00000544484 TRIM22Q8IYM9 498 aa15.21■□□□□ 0.02
CHD4-211ENST00000544484 LETM1O95202 739 aaPredicted RBP15.2■□□□□ 0.02
CHD4-211ENST00000544484 RBM5P52756 815 aaKnown RBP eCLIP15.2■□□□□ 0.024e-8■□□□□ 9.6
CHD4-211ENST00000544484 RAI14Q9P0K7 980 aa15.2■□□□□ 0.02
CHD4-211ENST00000544484 TDO2P48775 406 aa15.2■□□□□ 0.02
CHD4-211ENST00000544484 TXLNAP40222 546 aa15.2■□□□□ 0.02
CHD4-211ENST00000544484 WDR33Q9C0J8 1336 aaKnown RBP15.19■□□□□ 0.02
CHD4-211ENST00000544484 ZFYVE27Q5T4F4 411 aa15.19■□□□□ 0.02
CHD4-211ENST00000544484 PATL2C9JE40 543 aaKnown RBP15.19■□□□□ 0.02
CHD4-211ENST00000544484 PIBF1Q8WXW3 757 aa15.19■□□□□ 0.02
CHD4-211ENST00000544484 LRP2BPQ9P2M1 347 aa15.19■□□□□ 0.02
CHD4-211ENST00000544484 ABCF2Q9UG63 623 aa15.19■□□□□ 0.02
CHD4-211ENST00000544484 KRT18P05783 430 aaKnown RBP15.19■□□□□ 0.02
CHD4-211ENST00000544484 VSIG10Q8N0Z9 540 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 AEBP1Q8IUX7 1158 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 CNKSR2Q8WXI2 1034 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 MYD88Q99836 296 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 WASLO00401 505 aaPredicted RBP15.18■□□□□ 0.02
CHD4-211ENST00000544484 KRT85P78386 507 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 TAF7Q15545 349 aaPredicted RBP15.18■□□□□ 0.02
CHD4-211ENST00000544484 FBXO3Q9UK99 471 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 ZSCAN25Q6NSZ9 544 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 PHF8Q9UPP1 1060 aa15.18■□□□□ 0.02
CHD4-211ENST00000544484 UPF3BQ9BZI7 483 aaKnown RBP15.18■□□□□ 0.02
CHD4-211ENST00000544484 DDX11Q96FC9 970 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 TNMDQ9H2S6 317 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 ODF2Q5BJF6 829 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 BOLA2Q9H3K6 86 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 STARD3NLO95772 234 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 FBLN1P23142 703 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 JMYQ8N9B5 988 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 CASTP20810 708 aaKnown RBP15.17■□□□□ 0.02
CHD4-211ENST00000544484 METTL24Q5JXM2 366 aa15.17■□□□□ 0.02
CHD4-211ENST00000544484 NCOA1Q15788 1441 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 ZHX3Q9H4I2 956 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 MX1P20591 662 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 KIF1BPQ96EK5 621 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 GRIN2AQ12879 1464 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 FILIP1LQ4L180 1135 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 CCAR1Q8IX12 1150 aaKnown RBP15.16■□□□□ 0.02
CHD4-211ENST00000544484 CAGE1Q8TC20 777 aa15.16■□□□□ 0.02
CHD4-211ENST00000544484 ADAMTS2O95450 1211 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 IGHMBP2P38935 993 aaKnown RBP15.15■□□□□ 0.02
CHD4-211ENST00000544484 ZSCAN29Q8IWY8 852 aaPredicted RBP15.15■□□□□ 0.02
CHD4-211ENST00000544484 UBAC1Q9BSL1 405 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 TMOD3Q9NYL9 352 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 SF3B2Q13435 895 aaKnown RBP15.15■□□□□ 0.02
CHD4-211ENST00000544484 RUFY1Q96T51 708 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 SERPINC1P01008 464 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 MAGEC2Q9UBF1 373 aaPredicted RBP15.15■□□□□ 0.02
CHD4-211ENST00000544484 KIF14Q15058 1648 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 NOS1P29475 1434 aa15.15■□□□□ 0.02
CHD4-211ENST00000544484 ARGLU1Q9NWB6 273 aaPredicted RBP15.15■□□□□ 0.02
CHD4-211ENST00000544484 CCDC192P0DO97 292 aa15.14■□□□□ 0.02
CHD4-211ENST00000544484 TMEM132AQ24JP5 1023 aa15.14■□□□□ 0.02
CHD4-211ENST00000544484 FERMT3Q86UX7 667 aa15.14■□□□□ 0.02
CHD4-211ENST00000544484 SPATA32Q96LK8 384 aa15.14■□□□□ 0.01
CHD4-211ENST00000544484 CCDC8Q9H0W5 538 aaPredicted RBP15.14■□□□□ 0.01
CHD4-211ENST00000544484 CTNNA3Q9UI47 895 aa15.14■□□□□ 0.01
CHD4-211ENST00000544484 LARP1Q6PKG0 1096 aaKnown RBP15.14■□□□□ 0.01
CHD4-211ENST00000544484 AIDAQ96BJ3 306 aa15.14■□□□□ 0.01
CHD4-211ENST00000544484 PRPF40BQ6NWY9 871 aaKnown RBP15.14■□□□□ 0.01
CHD4-211ENST00000544484 LRRFIP2Q9Y608 721 aaKnown RBP15.14■□□□□ 0.01
CHD4-211ENST00000544484 FAM83GA6ND36 823 aa15.13■□□□□ 0.01
CHD4-211ENST00000544484 TEX35Q5T0J7 233 aa15.13■□□□□ 0.01
CHD4-211ENST00000544484 SOGA3Q5TF21 947 aa15.13■□□□□ 0.01
CHD4-211ENST00000544484 ALDH1L2Q3SY69 923 aa15.13■□□□□ 0.01
CHD4-211ENST00000544484 GLRX3O76003 335 aaKnown RBP15.12■□□□□ 0.01
CHD4-211ENST00000544484 TRIM27P14373 513 aa15.12■□□□□ 0.01
CHD4-211ENST00000544484 CCDC83Q8IWF9 413 aa15.12■□□□□ 0.01
CHD4-211ENST00000544484 MCM4P33991 863 aa15.12■□□□□ 0.01
CHD4-211ENST00000544484 ZSCAN31Q96LW9 406 aaPredicted RBP15.12■□□□□ 0.01
CHD4-211ENST00000544484 NKTRP30414 1462 aaKnown RBP15.11■□□□□ 0.01
CHD4-211ENST00000544484 KRT32Q14532 448 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 AMOTQ4VCS5 1084 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 DISP3Q9P2K9 1392 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 IMMTQ16891 758 aaKnown RBP15.11■□□□□ 0.01
CHD4-211ENST00000544484 HSP90AB2PQ58FF8 381 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 DNAAF4Q8WXU2 420 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 SSBP05455 408 aaKnown RBP eCLIP15.11■□□□□ 0.01
CHD4-211ENST00000544484 CCDC173Q0VFZ6 552 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 SMARCE1Q969G3 411 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 LAMC3Q9Y6N6 1575 aa15.11■□□□□ 0.01
CHD4-211ENST00000544484 ZNF608Q9ULD9 1512 aaPredicted RBP15.11■□□□□ 0.01
CHD4-211ENST00000544484 CUL7Q14999 1698 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 IFIT1P09914 478 aaKnown RBP15.1■□□□□ 0.01
CHD4-211ENST00000544484 HSP90B2PQ58FF3 399 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 ABCC11Q96J66 1382 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 MINDY4BA8MYZ0 360 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 GRPEL1Q9HAV7 217 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 FAM135AQ9P2D6 1515 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
CHD4-211ENST00000544484 CDKL5O76039 1030 aa15.09■□□□□ 0.01
CHD4-211ENST00000544484 SKIDA1Q1XH10 827 aa15.09■□□□□ 0.01
CHD4-211ENST00000544484 ZBTB3Q9H5J0 574 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms