RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FOXO3O43524 673 aa22.63■■□□□ 1.21
VIM-209ENST00000544301 INTS3Q68E01 1043 aaKnown RBP22.63■■□□□ 1.21
VIM-209ENST00000544301 EYA1Q99502 592 aa22.63■■□□□ 1.21
VIM-209ENST00000544301 NLRP6P59044 892 aa22.63■■□□□ 1.21
VIM-209ENST00000544301 RGS12O14924 1447 aa22.62■■□□□ 1.21
VIM-209ENST00000544301 TBC1D2Q9BYX2 928 aa22.61■■□□□ 1.21
VIM-209ENST00000544301 RTF1Q92541 710 aaKnown RBP22.6■■□□□ 1.21
VIM-209ENST00000544301 BCL11AQ9H165 835 aa22.6■■□□□ 1.21
VIM-209ENST00000544301 BMP2KLQ5H9B9 411 aa22.6■■□□□ 1.21
VIM-209ENST00000544301 MARF1Q9Y4F3 1742 aaKnown RBP22.6■■□□□ 1.21
VIM-209ENST00000544301 FRAT2O75474 233 aaPredicted RBP22.59■■□□□ 1.21
VIM-209ENST00000544301 MIS18AQ9NYP9 233 aa22.58■■□□□ 1.21
VIM-209ENST00000544301 PTPRCP08575 1304 aa22.58■■□□□ 1.21
VIM-209ENST00000544301 GAS2L2Q8NHY3 880 aa22.58■■□□□ 1.2
VIM-209ENST00000544301 USP54Q70EL1 1684 aa22.58■■□□□ 1.2
VIM-209ENST00000544301 TRHP20396 242 aaPredicted RBP22.57■■□□□ 1.2
VIM-209ENST00000544301 NUTM2GQ5VZR2 741 aa22.57■■□□□ 1.2
VIM-209ENST00000544301 HOXC9P31274 260 aa22.57■■□□□ 1.2
VIM-209ENST00000544301 ANTXR1Q9H6X2 564 aa22.57■■□□□ 1.2
VIM-209ENST00000544301 TSPYL4Q9UJ04 414 aa22.57■■□□□ 1.2
VIM-209ENST00000544301 SLKQ9H2G2 1235 aaPredicted RBP22.56■■□□□ 1.2
VIM-209ENST00000544301 ABTB2Q8N961 1025 aa22.55■■□□□ 1.2
VIM-209ENST00000544301 SLC4A2P04920 1241 aa22.54■■□□□ 1.2
VIM-209ENST00000544301 HTATSF1O43719 755 aaKnown RBP22.54■■□□□ 1.2
VIM-209ENST00000544301 DCTPP1Q9H773 170 aa22.54■■□□□ 1.2
VIM-209ENST00000544301 NWD1Q149M9 1564 aa22.53■■□□□ 1.2
VIM-209ENST00000544301 CHD2O14647 1828 aaKnown RBP22.53■■□□□ 1.2
VIM-209ENST00000544301 ANKRD44Q8N8A2 993 aa22.53■■□□□ 1.2
VIM-209ENST00000544301 ATP10DQ9P241 1426 aa22.53■■□□□ 1.2
VIM-209ENST00000544301 ANKLE2Q86XL3 938 aa22.52■■□□□ 1.2
VIM-209ENST00000544301 MSH6P52701 1360 aa22.52■■□□□ 1.2
VIM-209ENST00000544301 RBM25P49756 843 aaKnown RBP22.52■■□□□ 1.2
VIM-209ENST00000544301 GSE1Q14687 1217 aa22.51■■□□□ 1.19
VIM-209ENST00000544301 LRRC37A3O60309 1634 aa22.51■■□□□ 1.19
VIM-209ENST00000544301 RPAP2Q8IXW5 612 aaPredicted RBP22.51■■□□□ 1.19
VIM-209ENST00000544301 PHF8Q9UPP1 1060 aa22.51■■□□□ 1.19
VIM-209ENST00000544301 RTL1A6NKG5 1358 aa22.5■■□□□ 1.19
VIM-209ENST00000544301 GNAT3A8MTJ3 354 aa22.49■■□□□ 1.19
VIM-209ENST00000544301 CEP85Q6P2H3 762 aa22.49■■□□□ 1.19
VIM-209ENST00000544301 G2E3Q7L622 706 aa22.49■■□□□ 1.19
VIM-209ENST00000544301 MEIS3Q99687 375 aa22.48■■□□□ 1.19
VIM-209ENST00000544301 ZNF142P52746 1687 aaPredicted RBP22.47■■□□□ 1.19
VIM-209ENST00000544301 C14orf37Q86TY3 774 aa22.47■■□□□ 1.19
VIM-209ENST00000544301 PLEKHM2Q8IWE5 1019 aa22.47■■□□□ 1.19
VIM-209ENST00000544301 LTV1Q96GA3 475 aaPredicted RBP22.47■■□□□ 1.19
VIM-209ENST00000544301 TBC1D9Q6ZT07 1266 aa22.46■■□□□ 1.19
VIM-209ENST00000544301 RBM33Q96EV2 1170 aaKnown RBP22.46■■□□□ 1.19
VIM-209ENST00000544301 MAP3K5Q99683 1374 aa22.45■■□□□ 1.19
VIM-209ENST00000544301 IL17REQ8NFR9 667 aa22.45■■□□□ 1.18
VIM-209ENST00000544301 GSPT1P15170 499 aaKnown RBP22.44■■□□□ 1.18
VIM-209ENST00000544301 SPRYD3Q8NCJ5 442 aa22.44■■□□□ 1.18
VIM-209ENST00000544301 F6X3S4 739 aa22.43■■□□□ 1.18
VIM-209ENST00000544301 CCT4P50991 539 aaKnown RBP22.43■■□□□ 1.18
VIM-209ENST00000544301 LTN1O94822 1766 aa22.43■■□□□ 1.18
VIM-209ENST00000544301 HSCBQ8IWL3 235 aa22.43■■□□□ 1.18
VIM-209ENST00000544301 STK31Q9BXU1 1019 aa22.43■■□□□ 1.18
VIM-209ENST00000544301 SLC4A10Q6U841 1118 aa22.42■■□□□ 1.18
VIM-209ENST00000544301 C16orf71Q8IYS4 520 aaPredicted RBP22.42■■□□□ 1.18
VIM-209ENST00000544301 ADGRL3Q9HAR2 1447 aa22.42■■□□□ 1.18
VIM-209ENST00000544301 CDC45O75419 566 aa22.42■■□□□ 1.18
VIM-209ENST00000544301 IP6K1Q92551 441 aa22.42■■□□□ 1.18
VIM-209ENST00000544301 NFAT5O94916 1531 aa22.41■■□□□ 1.18
VIM-209ENST00000544301 CCDC30Q5VVM6 783 aa22.41■■□□□ 1.18
VIM-209ENST00000544301 USHBP1Q8N6Y0 703 aa22.41■■□□□ 1.18
VIM-209ENST00000544301 SNX21Q969T3 373 aa22.41■■□□□ 1.18
VIM-209ENST00000544301 BABAM1Q9NWV8 329 aa22.41■■□□□ 1.18
VIM-209ENST00000544301 TAF7Q15545 349 aaPredicted RBP22.4■■□□□ 1.18
VIM-209ENST00000544301 TTC22Q5TAA0 569 aa22.4■■□□□ 1.18
VIM-209ENST00000544301 ESCO1Q5FWF5 840 aa22.4■■□□□ 1.18
VIM-209ENST00000544301 KIF2CQ99661 725 aa22.4■■□□□ 1.18
VIM-209ENST00000544301 FAM208AQ9UK61 1670 aaKnown RBP22.4■■□□□ 1.18
VIM-209ENST00000544301 PSME1Q06323 249 aa22.39■■□□□ 1.18
VIM-209ENST00000544301 SOS1Q07889 1333 aaPredicted RBP22.39■■□□□ 1.17
VIM-209ENST00000544301 FLIIQ13045 1269 aa22.39■■□□□ 1.17
VIM-209ENST00000544301 OTUD7AQ8TE49 926 aaPredicted RBP22.38■■□□□ 1.17
VIM-209ENST00000544301 HMMRO75330 724 aa22.37■■□□□ 1.17
VIM-209ENST00000544301 CHMP5Q9NZZ3 219 aa22.37■■□□□ 1.17
VIM-209ENST00000544301 ADAMTSL3P82987 1691 aa22.37■■□□□ 1.17
VIM-209ENST00000544301 SMARCA5O60264 1052 aaPredicted RBP22.37■■□□□ 1.17
VIM-209ENST00000544301 NBPF6Q5VWK0 638 aa22.36■■□□□ 1.17
VIM-209ENST00000544301 NBPF4Q96M43 638 aa22.36■■□□□ 1.17
VIM-209ENST00000544301 NCOA3Q9Y6Q9 1424 aa22.36■■□□□ 1.17
VIM-209ENST00000544301 NECTIN2Q92692 538 aa22.36■■□□□ 1.17
VIM-209ENST00000544301 APBB1O00213 710 aa22.35■■□□□ 1.17
VIM-209ENST00000544301 GNAI2P04899 355 aa22.35■■□□□ 1.17
VIM-209ENST00000544301 FKBP5Q13451 457 aaPredicted RBP22.35■■□□□ 1.17
VIM-209ENST00000544301 KCNH5Q8NCM2 988 aa22.35■■□□□ 1.17
VIM-209ENST00000544301 NPHP4O75161 1426 aaPredicted RBP22.34■■□□□ 1.17
VIM-209ENST00000544301 CEMIPQ8WUJ3 1361 aa22.34■■□□□ 1.17
VIM-209ENST00000544301 CACNA1FO60840 1977 aa22.33■■□□□ 1.17
VIM-209ENST00000544301 SETD1BQ9UPS6 1966 aaKnown RBP22.33■■□□□ 1.17
VIM-209ENST00000544301 EIF5BO60841 1220 aaKnown RBP22.33■■□□□ 1.17
VIM-209ENST00000544301 PHRF1Q9P1Y6 1649 aaKnown RBP22.32■■□□□ 1.16
VIM-209ENST00000544301 DDIT3P35638 169 aa22.31■■□□□ 1.16
VIM-209ENST00000544301 ZBTB7CA1YPR0 619 aa22.31■■□□□ 1.16
VIM-209ENST00000544301 GNAI3P08754 354 aa22.31■■□□□ 1.16
VIM-209ENST00000544301 SDSP20132 328 aa22.31■■□□□ 1.16
VIM-209ENST00000544301 MED1Q15648 1581 aaPredicted RBP22.3■■□□□ 1.16
VIM-209ENST00000544301 ORAI2Q96SN7 254 aa22.3■■□□□ 1.16
VIM-209ENST00000544301 HSP90AB1P08238 724 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms