RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SMC5Q8IY18 1101 aa20.64■□□□□ 0.89
COL4A1-204ENST00000543140 ADGRL3Q9HAR2 1447 aa20.63■□□□□ 0.89
COL4A1-204ENST00000543140 ZBTB7CA1YPR0 619 aa20.63■□□□□ 0.89
COL4A1-204ENST00000543140 XPCQ01831 940 aaPredicted RBP20.63■□□□□ 0.89
COL4A1-204ENST00000543140 USHBP1Q8N6Y0 703 aa20.62■□□□□ 0.89
COL4A1-204ENST00000543140 API5Q9BZZ5 524 aaKnown RBP20.62■□□□□ 0.89
COL4A1-204ENST00000543140 GAS2L2Q8NHY3 880 aa20.61■□□□□ 0.89
COL4A1-204ENST00000543140 ORAI2Q96SN7 254 aa20.61■□□□□ 0.89
COL4A1-204ENST00000543140 TSPYL4Q9UJ04 414 aa20.61■□□□□ 0.89
COL4A1-204ENST00000543140 USP19O94966 1318 aa20.61■□□□□ 0.89
COL4A1-204ENST00000543140 LTN1O94822 1766 aa20.6■□□□□ 0.89
COL4A1-204ENST00000543140 DAXXQ9UER7 740 aaPredicted RBP20.6■□□□□ 0.89
COL4A1-204ENST00000543140 KIAA0232Q92628 1395 aa20.59■□□□□ 0.89
COL4A1-204ENST00000543140 LNPKQ9C0E8 428 aa20.59■□□□□ 0.89
COL4A1-204ENST00000543140 USP54Q70EL1 1684 aa20.59■□□□□ 0.89
COL4A1-204ENST00000543140 CHMP4BQ9H444 224 aaKnown RBP20.59■□□□□ 0.89
COL4A1-204ENST00000543140 KIF24Q5T7B8 1368 aa20.58■□□□□ 0.89
COL4A1-204ENST00000543140 NWD1Q149M9 1564 aa20.58■□□□□ 0.88
COL4A1-204ENST00000543140 HAP1P54257 671 aaPredicted RBP20.58■□□□□ 0.88
COL4A1-204ENST00000543140 BCL11AQ9H165 835 aa20.58■□□□□ 0.88
COL4A1-204ENST00000543140 GNAT3A8MTJ3 354 aa20.57■□□□□ 0.88
COL4A1-204ENST00000543140 SLC4A2P04920 1241 aa20.57■□□□□ 0.88
COL4A1-204ENST00000543140 NUCB1Q02818 461 aa20.57■□□□□ 0.88
COL4A1-204ENST00000543140 LMOD2Q6P5Q4 547 aa20.57■□□□□ 0.88
COL4A1-204ENST00000543140 SIRT2Q8IXJ6 389 aa20.57■□□□□ 0.88
COL4A1-204ENST00000543140 PROSER2Q86WR7 435 aaPredicted RBP20.56■□□□□ 0.88
COL4A1-204ENST00000543140 ANKRD45Q5TZF3 282 aa20.55■□□□□ 0.88
COL4A1-204ENST00000543140 CHD1LQ86WJ1 897 aa20.55■□□□□ 0.88
COL4A1-204ENST00000543140 IP6K1Q92551 441 aa20.55■□□□□ 0.88
COL4A1-204ENST00000543140 RGS12O14924 1447 aa20.53■□□□□ 0.88
COL4A1-204ENST00000543140 IL17REQ8NFR9 667 aa20.53■□□□□ 0.88
COL4A1-204ENST00000543140 NBPF6Q5VWK0 638 aa20.53■□□□□ 0.88
COL4A1-204ENST00000543140 INTS3Q68E01 1043 aaKnown RBP20.53■□□□□ 0.88
COL4A1-204ENST00000543140 NBPF4Q96M43 638 aa20.53■□□□□ 0.88
COL4A1-204ENST00000543140 NFAT5O94916 1531 aa20.53■□□□□ 0.88
COL4A1-204ENST00000543140 RTL1A6NKG5 1358 aa20.52■□□□□ 0.88
COL4A1-204ENST00000543140 G2E3Q7L622 706 aa20.52■□□□□ 0.88
COL4A1-204ENST00000543140 UPF2Q9HAU5 1272 aaKnown RBP20.52■□□□□ 0.88
COL4A1-204ENST00000543140 HTATSF1O43719 755 aaKnown RBP20.52■□□□□ 0.87
COL4A1-204ENST00000543140 MAP3K5Q99683 1374 aa20.51■□□□□ 0.87
COL4A1-204ENST00000543140 NECTIN2Q92692 538 aa20.51■□□□□ 0.87
COL4A1-204ENST00000543140 KCNH5Q8NCM2 988 aa20.51■□□□□ 0.87
COL4A1-204ENST00000543140 GCC1Q96CN9 775 aa20.51■□□□□ 0.87
COL4A1-204ENST00000543140 LRRC59Q96AG4 307 aaKnown RBP20.5■□□□□ 0.87
COL4A1-204ENST00000543140 PTPRCP08575 1304 aa20.5■□□□□ 0.87
COL4A1-204ENST00000543140 MSH6P52701 1360 aa20.49■□□□□ 0.87
COL4A1-204ENST00000543140 F6X3S4 739 aa20.49■□□□□ 0.87
COL4A1-204ENST00000543140 GCP02774 474 aa20.49■□□□□ 0.87
COL4A1-204ENST00000543140 RGPD2P0DJD1 1756 aa20.49■□□□□ 0.87
COL4A1-204ENST00000543140 SLC4A10Q6U841 1118 aa20.49■□□□□ 0.87
COL4A1-204ENST00000543140 MFAP1P55081 439 aaKnown RBP20.47■□□□□ 0.87
COL4A1-204ENST00000543140 RTL5Q5HYW3 569 aaPredicted RBP20.47■□□□□ 0.87
COL4A1-204ENST00000543140 TBC1D32Q96NH3 1257 aa20.47■□□□□ 0.87
COL4A1-204ENST00000543140 LRRC37A3O60309 1634 aa20.47■□□□□ 0.87
COL4A1-204ENST00000543140 TAF7Q15545 349 aaPredicted RBP20.47■□□□□ 0.87
COL4A1-204ENST00000543140 MEIS3Q99687 375 aa20.47■□□□□ 0.87
COL4A1-204ENST00000543140 KRT28Q7Z3Y7 464 aa20.46■□□□□ 0.87
COL4A1-204ENST00000543140 STK31Q9BXU1 1019 aa20.46■□□□□ 0.87
COL4A1-204ENST00000543140 DNAJC5Q9H3Z4 198 aa20.46■□□□□ 0.87
COL4A1-204ENST00000543140 C19orf44Q9H6X5 657 aa20.45■□□□□ 0.86
COL4A1-204ENST00000543140 ARHGEF25Q86VW2 580 aa20.44■□□□□ 0.86
COL4A1-204ENST00000543140 LGR6Q9HBX8 967 aa20.44■□□□□ 0.86
COL4A1-204ENST00000543140 CCDC30Q5VVM6 783 aa20.43■□□□□ 0.86
COL4A1-204ENST00000543140 C1orf167Q5SNV9 1468 aa20.42■□□□□ 0.86
COL4A1-204ENST00000543140 ANKRD44Q8N8A2 993 aa20.42■□□□□ 0.86
COL4A1-204ENST00000543140 DDX17Q92841 729 aaKnown RBP20.42■□□□□ 0.86
COL4A1-204ENST00000543140 ATP10DQ9P241 1426 aa20.42■□□□□ 0.86
COL4A1-204ENST00000543140 CEP85Q6P2H3 762 aa20.42■□□□□ 0.86
COL4A1-204ENST00000543140 FKBP5Q13451 457 aaPredicted RBP20.41■□□□□ 0.86
COL4A1-204ENST00000543140 DCTPP1Q9H773 170 aa20.41■□□□□ 0.86
COL4A1-204ENST00000543140 AXIN2Q9Y2T1 843 aa20.41■□□□□ 0.86
COL4A1-204ENST00000543140 FLIIQ13045 1269 aa20.41■□□□□ 0.86
COL4A1-204ENST00000543140 C22orf23Q9BZE7 217 aa20.41■□□□□ 0.86
COL4A1-204ENST00000543140 APBB1O00213 710 aa20.4■□□□□ 0.86
COL4A1-204ENST00000543140 ZNF530Q6P9A1 599 aaPredicted RBP20.4■□□□□ 0.86
COL4A1-204ENST00000543140 ANKRD24Q8TF21 1146 aa20.4■□□□□ 0.86
COL4A1-204ENST00000543140 ATF3P18847 181 aa20.4■□□□□ 0.86
COL4A1-204ENST00000543140 BMP2KLQ5H9B9 411 aa20.4■□□□□ 0.86
COL4A1-204ENST00000543140 RPAP2Q8IXW5 612 aaPredicted RBP20.4■□□□□ 0.86
COL4A1-204ENST00000543140 TRPM3Q9HCF6 1732 aaPredicted RBP20.39■□□□□ 0.86
COL4A1-204ENST00000543140 ZC3H6P61129 1189 aaKnown RBP20.39■□□□□ 0.85
COL4A1-204ENST00000543140 BECN1Q14457 450 aa20.39■□□□□ 0.85
COL4A1-204ENST00000543140 MPRIPQ6WCQ1 1025 aa20.39■□□□□ 0.85
COL4A1-204ENST00000543140 PHRF1Q9P1Y6 1649 aaKnown RBP20.38■□□□□ 0.85
COL4A1-204ENST00000543140 FAM208AQ9UK61 1670 aaKnown RBP20.38■□□□□ 0.85
COL4A1-204ENST00000543140 TMEM94Q12767 1356 aa20.38■□□□□ 0.85
COL4A1-204ENST00000543140 CCT4P50991 539 aaKnown RBP20.38■□□□□ 0.85
COL4A1-204ENST00000543140 SLIT3O75094 1523 aa20.38■□□□□ 0.85
COL4A1-204ENST00000543140 CEMIPQ8WUJ3 1361 aa20.38■□□□□ 0.85
COL4A1-204ENST00000543140 HSPA2P54652 639 aa20.37■□□□□ 0.85
COL4A1-204ENST00000543140 C16orf71Q8IYS4 520 aaPredicted RBP20.37■□□□□ 0.85
COL4A1-204ENST00000543140 BABAM1Q9NWV8 329 aa20.37■□□□□ 0.85
COL4A1-204ENST00000543140 PLEKHO1Q53GL0 409 aaPredicted RBP20.36■□□□□ 0.85
COL4A1-204ENST00000543140 HDGFL1Q5TGJ6 251 aa20.36■□□□□ 0.85
COL4A1-204ENST00000543140 KCNQ3O43525 872 aa20.36■□□□□ 0.85
COL4A1-204ENST00000543140 EIF2S2P20042 333 aaKnown RBP20.36■□□□□ 0.85
COL4A1-204ENST00000543140 RGPD5Q99666 1765 aa20.36■□□□□ 0.85
COL4A1-204ENST00000543140 STRCP1A6NGW2 1772 aa20.36■□□□□ 0.85
COL4A1-204ENST00000543140 SMARCA5O60264 1052 aaPredicted RBP20.35■□□□□ 0.85
COL4A1-204ENST00000543140 DEKP35659 375 aaKnown RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms