RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 FAM208AQ9UK61 1670 aaKnown RBP12.22□□□□□ -0.45
CLSTN3-212ENST00000541770 UTRNP46939 3433 aa12.21□□□□□ -0.45
CLSTN3-212ENST00000541770 HDGFL2Q7Z4V5 671 aaPredicted RBP12.21□□□□□ -0.45
CLSTN3-212ENST00000541770 USP31Q70CQ4 1352 aa12.2□□□□□ -0.46
CLSTN3-212ENST00000541770 PRIM1P49642 420 aaKnown RBP12.2□□□□□ -0.46
CLSTN3-212ENST00000541770 YBX3P16989 372 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLSTN3-212ENST00000541770 GRIN3BO60391 1043 aa12.18□□□□□ -0.46
CLSTN3-212ENST00000541770 MSL1Q68DK7 614 aa12.18□□□□□ -0.46
CLSTN3-212ENST00000541770 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-212ENST00000541770 SBNO2Q9Y2G9 1366 aa12.18□□□□□ -0.46
CLSTN3-212ENST00000541770 CD163L1Q9NR16 1453 aa12.17□□□□□ -0.46
CLSTN3-212ENST00000541770 ZNF526Q8TF50 670 aaPredicted RBP12.17□□□□□ -0.46
CLSTN3-212ENST00000541770 SLC12A5Q9H2X9 1139 aa12.17□□□□□ -0.46
CLSTN3-212ENST00000541770 ANKRD36BQ8N2N9 1353 aa12.17□□□□□ -0.46
CLSTN3-212ENST00000541770 COL23A1Q86Y22 540 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-212ENST00000541770 IP6K1Q92551 441 aa12.16□□□□□ -0.46
CLSTN3-212ENST00000541770 EDC4Q6P2E9 1401 aaKnown RBP12.16□□□□□ -0.46
CLSTN3-212ENST00000541770 ATP10DQ9P241 1426 aa12.16□□□□□ -0.46
CLSTN3-212ENST00000541770 C5P01031 1676 aa12.16□□□□□ -0.46
CLSTN3-212ENST00000541770 AMPHP49418 695 aa12.15□□□□□ -0.46
CLSTN3-212ENST00000541770 ZCRB1Q8TBF4 217 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-212ENST00000541770 GPBP1L1Q9HC44 474 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-212ENST00000541770 TERF2IPQ9NYB0 399 aa12.15□□□□□ -0.46
CLSTN3-212ENST00000541770 USP47Q96K76 1375 aa12.15□□□□□ -0.46
CLSTN3-212ENST00000541770 SLC24A1O60721 1099 aa12.14□□□□□ -0.47
CLSTN3-212ENST00000541770 WWC3Q9ULE0 1092 aa12.14□□□□□ -0.47
CLSTN3-212ENST00000541770 A0A1W2PP64 1363 aa12.14□□□□□ -0.47
CLSTN3-212ENST00000541770 ST20-MTHFSA0A0A6YYL1 179 aa12.13□□□□□ -0.47
CLSTN3-212ENST00000541770 FBLN1P23142 703 aa12.13□□□□□ -0.47
CLSTN3-212ENST00000541770 NSD2O96028 1365 aa12.13□□□□□ -0.47
CLSTN3-212ENST00000541770 TAF1LQ8IZX4 1826 aa12.13□□□□□ -0.47
CLSTN3-212ENST00000541770 MEGF6O75095 1541 aa12.12□□□□□ -0.47
CLSTN3-212ENST00000541770 HOXC9P31274 260 aa12.12□□□□□ -0.47
CLSTN3-212ENST00000541770 COG3Q96JB2 828 aa12.12□□□□□ -0.47
CLSTN3-212ENST00000541770 MAP3K19Q56UN5 1328 aa12.11□□□□□ -0.47
CLSTN3-212ENST00000541770 ZEB1P37275 1124 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-212ENST00000541770 USHBP1Q8N6Y0 703 aa12.11□□□□□ -0.47
CLSTN3-212ENST00000541770 TESK2Q96S53 571 aa12.11□□□□□ -0.47
CLSTN3-212ENST00000541770 EIF4G2P78344 907 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLSTN3-212ENST00000541770 PHF14O94880 888 aa12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 HSPA6P17066 643 aa12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 RAPGEF4Q8WZA2 1011 aa12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 PUS7Q96PZ0 661 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 CD2APQ9Y5K6 639 aa12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 ITGB4P16144 1822 aa12.09□□□□□ -0.47
CLSTN3-212ENST00000541770 RRS1Q15050 365 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 NBPF6Q5VWK0 638 aa12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 MPRIPQ6WCQ1 1025 aa12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 FLAD1Q8NFF5 587 aa12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 NBPF4Q96M43 638 aa12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 C4BP0C0L5 1744 aa12.08□□□□□ -0.48
CLSTN3-212ENST00000541770 PALLDQ8WX93 1383 aa12.07□□□□□ -0.48
CLSTN3-212ENST00000541770 TATP17735 454 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-212ENST00000541770 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-212ENST00000541770 AK7Q96M32 723 aa12.07□□□□□ -0.48
CLSTN3-212ENST00000541770 IGSF1Q8N6C5 1336 aa12.07□□□□□ -0.48
CLSTN3-212ENST00000541770 HSPA5P11021 654 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 TMF1P82094 1093 aa12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 SMIM5Q71RC9 77 aa12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 GOLGB1Q14789 3259 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 UBR3Q6ZT12 1888 aa12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 TOGARAM1Q9Y4F4 1720 aa12.06□□□□□ -0.48
CLSTN3-212ENST00000541770 HMGB2P26583 209 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-212ENST00000541770 CGNL1Q0VF96 1302 aa12.05□□□□□ -0.48
CLSTN3-212ENST00000541770 PCDH11XQ9BZA7 1347 aa12.05□□□□□ -0.48
CLSTN3-212ENST00000541770 PCDH11YQ9BZA8 1340 aa12.05□□□□□ -0.48
CLSTN3-212ENST00000541770 ADCY9O60503 1353 aa12.05□□□□□ -0.48
CLSTN3-212ENST00000541770 CDCA8Q53HL2 280 aa12.04□□□□□ -0.48
CLSTN3-212ENST00000541770 GGNBP2Q9H3C7 697 aa12.04□□□□□ -0.48
CLSTN3-212ENST00000541770 KIF20BQ96Q89 1820 aa12.04□□□□□ -0.48
CLSTN3-212ENST00000541770 RTL1A6NKG5 1358 aa12.04□□□□□ -0.48
CLSTN3-212ENST00000541770 N4BP2Q86UW6 1770 aaPredicted RBP12.02□□□□□ -0.48
CLSTN3-212ENST00000541770 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.02□□□□□ -0.49
CLSTN3-212ENST00000541770 AMIGO3Q86WK7 504 aa12.02□□□□□ -0.49
CLSTN3-212ENST00000541770 SMARCC1Q92922 1105 aaPredicted RBP12.02□□□□□ -0.49
CLSTN3-212ENST00000541770 KIF3CO14782 793 aa12.01□□□□□ -0.49
CLSTN3-212ENST00000541770 HSP90AB2PQ58FF8 381 aa12.01□□□□□ -0.49
CLSTN3-212ENST00000541770 NSD3Q9BZ95 1437 aa12.01□□□□□ -0.49
CLSTN3-212ENST00000541770 CYP27B1O15528 508 aa12□□□□□ -0.49
CLSTN3-212ENST00000541770 PKD1L3Q7Z443 1732 aa12□□□□□ -0.49
CLSTN3-212ENST00000541770 FYB1O15117 783 aa11.99□□□□□ -0.49
CLSTN3-212ENST00000541770 GNPATO15228 680 aa11.99□□□□□ -0.49
CLSTN3-212ENST00000541770 LINC00116Q8NCU8 138 aa11.99□□□□□ -0.49
CLSTN3-212ENST00000541770 PIGBQ92521 554 aa11.99□□□□□ -0.49
CLSTN3-212ENST00000541770 MAP2P11137 1827 aaKnown RBP11.99□□□□□ -0.49
CLSTN3-212ENST00000541770 INSRP06213 1382 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 FLT4P35916 1363 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 PPM1GO15355 546 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 SSFA2P28290 1259 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 APLP1P51693 650 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 BCS1LQ9Y276 419 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 CEP350Q5VT06 3117 aa11.98□□□□□ -0.49
CLSTN3-212ENST00000541770 LOC102724428A0A0B4J2F2 783 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 ATP6V1AP38606 617 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 SIK1P57059 783 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 ARHGAP27Q6ZUM4 889 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 TMOD3Q9NYL9 352 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 WDR90Q96KV7 1748 aa11.97□□□□□ -0.49
CLSTN3-212ENST00000541770 KIF13BQ9NQT8 1826 aa11.96□□□□□ -0.49
CLSTN3-212ENST00000541770 TOMM70O94826 608 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms