RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 SENP3-EIF4A1A0A087X0R7 540 aa12.45□□□□□ -0.42
DDX55-208ENST00000541259 PITPNM1O00562 1244 aa12.45□□□□□ -0.42
DDX55-208ENST00000541259 CSB-PGBD3P0DP91 1061 aa12.45□□□□□ -0.42
DDX55-208ENST00000541259 EVA1CP58658 441 aa12.45□□□□□ -0.42
DDX55-208ENST00000541259 MEX3CQ5U5Q3 659 aaKnown RBP12.45□□□□□ -0.42
DDX55-208ENST00000541259 LARP1Q6PKG0 1096 aaKnown RBP12.45□□□□□ -0.42
DDX55-208ENST00000541259 ZBTB47Q9UFB7 747 aaPredicted RBP12.45□□□□□ -0.42
DDX55-208ENST00000541259 WDR17Q8IZU2 1322 aa12.44□□□□□ -0.42
DDX55-208ENST00000541259 IGSF1Q8N6C5 1336 aa12.44□□□□□ -0.42
DDX55-208ENST00000541259 SULT6B1Q6IMI4 303 aa12.44□□□□□ -0.42
DDX55-208ENST00000541259 CCDC146Q8IYE0 955 aa12.44□□□□□ -0.42
DDX55-208ENST00000541259 NLRP2Q9NX02 1062 aa12.44□□□□□ -0.42
DDX55-208ENST00000541259 BCL9LQ86UU0 1499 aa12.43□□□□□ -0.42
DDX55-208ENST00000541259 ILDR1Q86SU0 546 aaPredicted RBP12.43□□□□□ -0.42
DDX55-208ENST00000541259 FNBP4Q8N3X1 1017 aaPredicted RBP12.43□□□□□ -0.42
DDX55-208ENST00000541259 RSPH6AQ9H0K4 717 aa12.43□□□□□ -0.42
DDX55-208ENST00000541259 DLG5Q8TDM6 1919 aa12.43□□□□□ -0.42
DDX55-208ENST00000541259 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.42□□□□□ -0.42
DDX55-208ENST00000541259 TOM1L2Q6ZVM7 507 aa12.42□□□□□ -0.42
DDX55-208ENST00000541259 AFF2P51816 1311 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 FCHSD2O94868 740 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 PRKAR2BP31323 418 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 NCAPD2Q15021 1401 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 UNC5CLQ8IV45 518 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 SPOCK2Q92563 424 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 PLEKHF1Q96S99 279 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 USP21Q9UK80 565 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 WNK3Q9BYP7 1800 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 KDRP35968 1356 aa12.41□□□□□ -0.42
DDX55-208ENST00000541259 CRB1P82279 1406 aa12.4□□□□□ -0.42
DDX55-208ENST00000541259 PHACTR3Q96KR7 559 aa12.4□□□□□ -0.42
DDX55-208ENST00000541259 CARD10Q9BWT7 1032 aa12.4□□□□□ -0.42
DDX55-208ENST00000541259 USP35Q9P2H5 1018 aa12.4□□□□□ -0.42
DDX55-208ENST00000541259 RUNDC1Q96C34 613 aa12.39□□□□□ -0.43
DDX55-208ENST00000541259 VIRMAQ69YN4 1812 aaKnown RBP12.39□□□□□ -0.43
DDX55-208ENST00000541259 YTHDC1Q96MU7 727 aaKnown RBP12.38□□□□□ -0.43
DDX55-208ENST00000541259 SPATA31A1Q5TZJ5 1347 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 SPATA31A5Q5VU36 1347 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 SPATA31A7Q8IWB4 1347 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 MEGF6O75095 1541 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 PARP4Q9UKK3 1724 aaKnown RBP12.37□□□□□ -0.43
DDX55-208ENST00000541259 APAF1O14727 1248 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 VPS72Q15906 364 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 TCP11L2Q8N4U5 519 aa12.37□□□□□ -0.43
DDX55-208ENST00000541259 CCDC9Q9Y3X0 531 aaKnown RBP12.37□□□□□ -0.43
DDX55-208ENST00000541259 PNNQ9H307 717 aaKnown RBP12.36□□□□□ -0.43
DDX55-208ENST00000541259 RRP7AQ9Y3A4 280 aaKnown RBP12.36□□□□□ -0.43
DDX55-208ENST00000541259 SALL2Q9Y467 1007 aaPredicted RBP12.36□□□□□ -0.43
DDX55-208ENST00000541259 SHANK3Q9BYB0 1731 aa12.36□□□□□ -0.43
DDX55-208ENST00000541259 GLI3P10071 1580 aa12.35□□□□□ -0.43
DDX55-208ENST00000541259 PKD1L3Q7Z443 1732 aa12.35□□□□□ -0.43
DDX55-208ENST00000541259 TATP17735 454 aaPredicted RBP12.35□□□□□ -0.43
DDX55-208ENST00000541259 HNRNPUQ00839 825 aaKnown RBP eCLIP12.35□□□□□ -0.43
DDX55-208ENST00000541259 MTHFSDQ2M296 383 aaKnown RBP12.35□□□□□ -0.43
DDX55-208ENST00000541259 RAPGEF4Q8WZA2 1011 aa12.35□□□□□ -0.43
DDX55-208ENST00000541259 QTRT2Q9H974 415 aaKnown RBP12.35□□□□□ -0.43
DDX55-208ENST00000541259 ATRNO75882 1429 aa12.35□□□□□ -0.43
DDX55-208ENST00000541259 MAPK8IP3Q9UPT6 1336 aa12.35□□□□□ -0.43
DDX55-208ENST00000541259 TMPOP42166 694 aaKnown RBP12.34□□□□□ -0.43
DDX55-208ENST00000541259 NEUROD2Q15784 382 aa12.34□□□□□ -0.43
DDX55-208ENST00000541259 KAT6BQ8WYB5 2073 aa12.34□□□□□ -0.43
DDX55-208ENST00000541259 IL2RBP14784 551 aa12.33□□□□□ -0.44
DDX55-208ENST00000541259 NFE2L2Q16236 605 aa12.33□□□□□ -0.44
DDX55-208ENST00000541259 RGS17Q9UGC6 210 aaPredicted RBP12.33□□□□□ -0.44
DDX55-208ENST00000541259 TRPC5Q9UL62 973 aaPredicted RBP12.33□□□□□ -0.44
DDX55-208ENST00000541259 DISP2A7MBM2 1401 aa12.33□□□□□ -0.44
DDX55-208ENST00000541259 OVOS2A0A0G2JMS6 1433 aa12.32□□□□□ -0.44
DDX55-208ENST00000541259 NEFMP07197 916 aa12.32□□□□□ -0.44
DDX55-208ENST00000541259 RIPK4P57078 832 aa12.32□□□□□ -0.44
DDX55-208ENST00000541259 FAM98CQ17RN3 349 aaKnown RBP12.32□□□□□ -0.44
DDX55-208ENST00000541259 PLEKHO1Q53GL0 409 aaPredicted RBP12.32□□□□□ -0.44
DDX55-208ENST00000541259 GJD4Q96KN9 370 aaPredicted RBP12.32□□□□□ -0.44
DDX55-208ENST00000541259 THRAP3Q9Y2W1 955 aaKnown RBP12.32□□□□□ -0.44
DDX55-208ENST00000541259 BARGINQ6ZT62 677 aa12.31□□□□□ -0.44
DDX55-208ENST00000541259 BRWD3Q6RI45 1802 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 LRRC37A3O60309 1634 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 AMOTQ4VCS5 1084 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 ZNF772Q68DY9 489 aaPredicted RBP12.3□□□□□ -0.44
DDX55-208ENST00000541259 ZNF530Q6P9A1 599 aaPredicted RBP12.3□□□□□ -0.44
DDX55-208ENST00000541259 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 ZCRB1Q8TBF4 217 aaKnown RBP12.3□□□□□ -0.44
DDX55-208ENST00000541259 CREBZFQ9NS37 354 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 TRIM35Q9UPQ4 493 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 SCN11AQ9UI33 1791 aa12.3□□□□□ -0.44
DDX55-208ENST00000541259 THSD7AQ9UPZ6 1657 aa12.29□□□□□ -0.44
DDX55-208ENST00000541259 CYP27B1O15528 508 aa12.29□□□□□ -0.44
DDX55-208ENST00000541259 DCTN1Q14203 1278 aa12.29□□□□□ -0.44
DDX55-208ENST00000541259 POTEAQ6S8J7 498 aa12.29□□□□□ -0.44
DDX55-208ENST00000541259 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.29□□□□□ -0.449e-6■□□□□ 9.4
DDX55-208ENST00000541259 SPG7Q9UQ90 795 aa12.29□□□□□ -0.44
DDX55-208ENST00000541259 EXOC5O00471 708 aa12.28□□□□□ -0.44
DDX55-208ENST00000541259 DDX54Q8TDD1 881 aaKnown RBP12.28□□□□□ -0.44
DDX55-208ENST00000541259 THUMPD2Q9BTF0 503 aaKnown RBP12.28□□□□□ -0.44
DDX55-208ENST00000541259 CDCA7Q9BWT1 371 aaPredicted RBP12.28□□□□□ -0.44
DDX55-208ENST00000541259 GNAT3A8MTJ3 354 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 PHKG2P15735 406 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 AKAP4Q5JQC9 854 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 MPRIPQ6WCQ1 1025 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 MCM10Q7L590 875 aa12.27□□□□□ -0.45
DDX55-208ENST00000541259 WWC1Q8IX03 1113 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms