RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 BCL11BQ9C0K0 894 aaPredicted RBP17.87■□□□□ 0.45
LTBR-208ENST00000541005 ITGB4P16144 1822 aa17.86■□□□□ 0.45
LTBR-208ENST00000541005 EN1Q05925 392 aaPredicted RBP17.86■□□□□ 0.45
LTBR-208ENST00000541005 EIF4A2Q14240 407 aaKnown RBP17.86■□□□□ 0.45
LTBR-208ENST00000541005 RAPGEF4Q8WZA2 1011 aa17.86■□□□□ 0.45
LTBR-208ENST00000541005 CAMKK2Q96RR4 588 aa17.86■□□□□ 0.45
LTBR-208ENST00000541005 TOGARAM1Q9Y4F4 1720 aa17.86■□□□□ 0.45
LTBR-208ENST00000541005 APBA3O96018 575 aa17.85■□□□□ 0.45
LTBR-208ENST00000541005 ZCRB1Q8TBF4 217 aaKnown RBP17.85■□□□□ 0.45
LTBR-208ENST00000541005 EYA1Q99502 592 aa17.85■□□□□ 0.45
LTBR-208ENST00000541005 IGSF1Q8N6C5 1336 aa17.84■□□□□ 0.45
LTBR-208ENST00000541005 TATP17735 454 aaPredicted RBP17.83■□□□□ 0.44
LTBR-208ENST00000541005 CC2D1BQ5T0F9 858 aaKnown RBP17.83■□□□□ 0.44
LTBR-208ENST00000541005 LY75O60449 1722 aa17.83■□□□□ 0.44
LTBR-208ENST00000541005 COL3A1P02461 1466 aaPredicted RBP17.82■□□□□ 0.44
LTBR-208ENST00000541005 PCDH11XQ9BZA7 1347 aa17.82■□□□□ 0.44
LTBR-208ENST00000541005 PCDH11YQ9BZA8 1340 aa17.82■□□□□ 0.44
LTBR-208ENST00000541005 PLSCR1O15162 318 aa17.82■□□□□ 0.44
LTBR-208ENST00000541005 ZEB1P37275 1124 aaPredicted RBP17.82■□□□□ 0.44
LTBR-208ENST00000541005 EZH2Q15910 746 aaKnown RBP17.82■□□□□ 0.44
LTBR-208ENST00000541005 PTF1AQ7RTS3 328 aa17.82■□□□□ 0.44
LTBR-208ENST00000541005 VIRMAQ69YN4 1812 aaKnown RBP17.81■□□□□ 0.44
LTBR-208ENST00000541005 KDRP35968 1356 aa17.8■□□□□ 0.44
LTBR-208ENST00000541005 DDX54Q8TDD1 881 aaKnown RBP17.8■□□□□ 0.44
LTBR-208ENST00000541005 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.8■□□□□ 0.44
LTBR-208ENST00000541005 MTHFSP49914 203 aa17.79■□□□□ 0.44
LTBR-208ENST00000541005 PAPPAQ13219 1627 aa17.79■□□□□ 0.44
LTBR-208ENST00000541005 KCNQ2O43526 872 aa17.78■□□□□ 0.44
LTBR-208ENST00000541005 IL13P35225 146 aa17.78■□□□□ 0.44
LTBR-208ENST00000541005 ACSBG1Q96GR2 724 aa17.77■□□□□ 0.44
LTBR-208ENST00000541005 CYP27B1O15528 508 aa17.76■□□□□ 0.43
LTBR-208ENST00000541005 LRP5O75197 1615 aa17.76■□□□□ 0.43
LTBR-208ENST00000541005 SPG7Q9UQ90 795 aa17.75■□□□□ 0.43
LTBR-208ENST00000541005 SCN11AQ9UI33 1791 aa17.75■□□□□ 0.43
LTBR-208ENST00000541005 QSER1Q2KHR3 1735 aa17.75■□□□□ 0.43
LTBR-208ENST00000541005 NKX1-1Q15270 411 aaPredicted RBP17.74■□□□□ 0.43
LTBR-208ENST00000541005 TAF1LQ8IZX4 1826 aa17.74■□□□□ 0.43
LTBR-208ENST00000541005 PROM2Q8N271 834 aa17.73■□□□□ 0.43
LTBR-208ENST00000541005 CASZ1Q86V15 1759 aa17.73■□□□□ 0.43
LTBR-208ENST00000541005 AEBP1Q8IUX7 1158 aa17.72■□□□□ 0.43
LTBR-208ENST00000541005 TUBGCP6Q96RT7 1819 aa17.71■□□□□ 0.43
LTBR-208ENST00000541005 DIAPH1O60610 1272 aaKnown RBP17.71■□□□□ 0.43
LTBR-208ENST00000541005 PRIM1P49642 420 aaKnown RBP17.71■□□□□ 0.43
LTBR-208ENST00000541005 ADAMTS7Q9UKP4 1686 aa17.71■□□□□ 0.42
LTBR-208ENST00000541005 PHKG2P15735 406 aa17.7■□□□□ 0.42
LTBR-208ENST00000541005 TXNRD1Q16881 649 aa17.7■□□□□ 0.42
LTBR-208ENST00000541005 SULT6B1Q6IMI4 303 aa17.7■□□□□ 0.42
LTBR-208ENST00000541005 C5P01031 1676 aa17.7■□□□□ 0.42
LTBR-208ENST00000541005 PPP2R1AP30153 589 aa17.69■□□□□ 0.42
LTBR-208ENST00000541005 AMOTQ4VCS5 1084 aa17.69■□□□□ 0.42
LTBR-208ENST00000541005 IFNL2Q8IZJ0 200 aa17.69■□□□□ 0.42
LTBR-208ENST00000541005 CNGB1Q14028 1251 aaPredicted RBP17.68■□□□□ 0.42
LTBR-208ENST00000541005 PLEKHO1Q53GL0 409 aaPredicted RBP17.68■□□□□ 0.42
LTBR-208ENST00000541005 NBPF14Q5TI25 921 aa17.68■□□□□ 0.42
LTBR-208ENST00000541005 SYTL4Q96C24 671 aaPredicted RBP17.68■□□□□ 0.42
LTBR-208ENST00000541005 ZNF831Q5JPB2 1677 aa17.67■□□□□ 0.42
LTBR-208ENST00000541005 PSDA5PKW4 1024 aaPredicted RBP17.67■□□□□ 0.42
LTBR-208ENST00000541005 R3HDM1Q15032 1099 aaKnown RBP17.67■□□□□ 0.42
LTBR-208ENST00000541005 KDM6AO15550 1401 aaPredicted RBP17.66■□□□□ 0.42
LTBR-208ENST00000541005 SLC27A3Q5K4L6 730 aa17.66■□□□□ 0.42
LTBR-208ENST00000541005 CFAP53Q96M91 514 aa17.66■□□□□ 0.42
LTBR-208ENST00000541005 ANO8Q9HCE9 1232 aaPredicted RBP17.66■□□□□ 0.42
LTBR-208ENST00000541005 HSP90AB1P08238 724 aaKnown RBP17.65■□□□□ 0.42
LTBR-208ENST00000541005 DDX10Q13206 875 aaKnown RBP17.64■□□□□ 0.41
LTBR-208ENST00000541005 ZNF530Q6P9A1 599 aaPredicted RBP17.64■□□□□ 0.41
LTBR-208ENST00000541005 MRC1P22897 1456 aa17.63■□□□□ 0.41
LTBR-208ENST00000541005 HMOX1P09601 288 aa17.63■□□□□ 0.41
LTBR-208ENST00000541005 DCAF5Q96JK2 942 aa17.63■□□□□ 0.41
LTBR-208ENST00000541005 LRRC4BQ9NT99 713 aa17.63■□□□□ 0.41
LTBR-208ENST00000541005 SIPA1L3O60292 1781 aaPredicted RBP17.63■□□□□ 0.41
LTBR-208ENST00000541005 CICQ96RK0 1608 aaPredicted RBP17.62■□□□□ 0.41
LTBR-208ENST00000541005 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
LTBR-208ENST00000541005 PALLDQ8WX93 1383 aa17.62■□□□□ 0.41
LTBR-208ENST00000541005 COL24A1Q17RW2 1714 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 ERVV-2B6SEH9 535 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 RALBP1Q15311 655 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 C1orf141Q5JVX7 400 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 PIGBQ92521 554 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 COL5A3P25940 1745 aaPredicted RBP17.61■□□□□ 0.41
LTBR-208ENST00000541005 UBR3Q6ZT12 1888 aa17.61■□□□□ 0.41
LTBR-208ENST00000541005 DLG5Q8TDM6 1919 aa17.6■□□□□ 0.41
LTBR-208ENST00000541005 SMARCC1Q92922 1105 aaPredicted RBP17.6■□□□□ 0.41
LTBR-208ENST00000541005 STK32BQ9NY57 414 aa17.6■□□□□ 0.41
LTBR-208ENST00000541005 TMOD3Q9NYL9 352 aa17.6■□□□□ 0.41
LTBR-208ENST00000541005 C4BP0C0L5 1744 aa17.6■□□□□ 0.41
LTBR-208ENST00000541005 U2SURPO15042 1029 aaKnown RBP17.59■□□□□ 0.41
LTBR-208ENST00000541005 SLC15A2Q16348 729 aa17.59■□□□□ 0.41
LTBR-208ENST00000541005 AKAP4Q5JQC9 854 aa17.59■□□□□ 0.41
LTBR-208ENST00000541005 NUDCQ9Y266 331 aa17.59■□□□□ 0.41
LTBR-208ENST00000541005 AKT1S1Q96B36 256 aa17.58■□□□□ 0.4
LTBR-208ENST00000541005 CCNL1Q9UK58 526 aaPredicted RBP17.58■□□□□ 0.4
LTBR-208ENST00000541005 UBR2Q8IWV8 1755 aa17.58■□□□□ 0.4
LTBR-208ENST00000541005 SRCAPQ6ZRS2 3230 aa17.57■□□□□ 0.4
LTBR-208ENST00000541005 HMGB2P26583 209 aaKnown RBP17.57■□□□□ 0.4
LTBR-208ENST00000541005 RSPH6AQ9H0K4 717 aa17.57■□□□□ 0.4
LTBR-208ENST00000541005 ZNF827Q17R98 1081 aa17.56■□□□□ 0.4
LTBR-208ENST00000541005 MTHFSDQ2M296 383 aaKnown RBP17.56■□□□□ 0.4
LTBR-208ENST00000541005 TJP1Q07157 1748 aa17.55■□□□□ 0.4
LTBR-208ENST00000541005 MYBBP1AQ9BQG0 1328 aaKnown RBP17.54■□□□□ 0.4
LTBR-208ENST00000541005 MYH14Q7Z406 1995 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms