RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 OVOS2A0A0G2JMS6 1433 aa16.34■□□□□ 0.21
SMAD3-204ENST00000540846 EVA1CP58658 441 aa16.34■□□□□ 0.21
SMAD3-204ENST00000540846 UNC5CLQ8IV45 518 aa16.34■□□□□ 0.21
SMAD3-204ENST00000540846 PHF23Q9BUL5 403 aaPredicted RBP16.34■□□□□ 0.21
SMAD3-204ENST00000540846 GLI3P10071 1580 aa16.33■□□□□ 0.2
SMAD3-204ENST00000540846 ADAMTS7Q9UKP4 1686 aa16.33■□□□□ 0.2
SMAD3-204ENST00000540846 SLFN5Q08AF3 891 aa16.33■□□□□ 0.2
SMAD3-204ENST00000540846 DUSP27Q5VZP5 1158 aa16.33■□□□□ 0.2
SMAD3-204ENST00000540846 TRMT2AQ8IZ69 625 aaKnown RBP16.33■□□□□ 0.2
SMAD3-204ENST00000540846 PNNQ9H307 717 aaKnown RBP16.33■□□□□ 0.2
SMAD3-204ENST00000540846 SPATA31A1Q5TZJ5 1347 aa16.33■□□□□ 0.2
SMAD3-204ENST00000540846 LRRC37A3O60309 1634 aa16.32■□□□□ 0.2
SMAD3-204ENST00000540846 TMPOP42166 694 aaKnown RBP16.32■□□□□ 0.2
SMAD3-204ENST00000540846 AFF2P51816 1311 aa16.32■□□□□ 0.2
SMAD3-204ENST00000540846 SPATA31A5Q5VU36 1347 aa16.32■□□□□ 0.2
SMAD3-204ENST00000540846 SPATA31A7Q8IWB4 1347 aa16.32■□□□□ 0.2
SMAD3-204ENST00000540846 MAPK8IP3Q9UPT6 1336 aa16.32■□□□□ 0.2
SMAD3-204ENST00000540846 CCDC27Q2M243 656 aa16.31■□□□□ 0.2
SMAD3-204ENST00000540846 ATRNO75882 1429 aa16.31■□□□□ 0.2
SMAD3-204ENST00000540846 THSD7AQ9UPZ6 1657 aa16.31■□□□□ 0.2
SMAD3-204ENST00000540846 E9PSI1 815 aa16.3■□□□□ 0.2
SMAD3-204ENST00000540846 RRP1P56182 461 aaKnown RBP16.3■□□□□ 0.2
SMAD3-204ENST00000540846 VPS72Q15906 364 aa16.3■□□□□ 0.2
SMAD3-204ENST00000540846 NFE2L2Q16236 605 aa16.3■□□□□ 0.2
SMAD3-204ENST00000540846 MTHFSDQ2M296 383 aaKnown RBP16.3■□□□□ 0.2
SMAD3-204ENST00000540846 MEX3CQ5U5Q3 659 aaKnown RBP16.3■□□□□ 0.2
SMAD3-204ENST00000540846 RRP7AQ9Y3A4 280 aaKnown RBP16.3■□□□□ 0.2
SMAD3-204ENST00000540846 WWC1Q8IX03 1113 aa16.3■□□□□ 0.2
SMAD3-204ENST00000540846 USP21Q9UK80 565 aa16.3■□□□□ 0.2
SMAD3-204ENST00000540846 PPP4R2Q9NY27 417 aa16.29■□□□□ 0.2
SMAD3-204ENST00000540846 TRIM35Q9UPQ4 493 aa16.29■□□□□ 0.2
SMAD3-204ENST00000540846 PELP1Q8IZL8 1130 aaKnown RBP16.28■□□□□ 0.2
SMAD3-204ENST00000540846 RAPGEF4Q8WZA2 1011 aa16.28■□□□□ 0.2
SMAD3-204ENST00000540846 SCN11AQ9UI33 1791 aa16.28■□□□□ 0.2
SMAD3-204ENST00000540846 ILDR1Q86SU0 546 aaPredicted RBP16.27■□□□□ 0.2
SMAD3-204ENST00000540846 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.27■□□□□ 0.23e-7■□□□□ 8.4
SMAD3-204ENST00000540846 USP35Q9P2H5 1018 aa16.27■□□□□ 0.2
SMAD3-204ENST00000540846 IL2RBP14784 551 aa16.26■□□□□ 0.19
SMAD3-204ENST00000540846 TATP17735 454 aaPredicted RBP16.26■□□□□ 0.19
SMAD3-204ENST00000540846 SPINK5Q9NQ38 1064 aaPredicted RBP16.26■□□□□ 0.19
SMAD3-204ENST00000540846 THRAP3Q9Y2W1 955 aaKnown RBP16.26■□□□□ 0.19
SMAD3-204ENST00000540846 SIPA1L3O60292 1781 aaPredicted RBP16.26■□□□□ 0.19
SMAD3-204ENST00000540846 RIPK4P57078 832 aa16.26■□□□□ 0.19
SMAD3-204ENST00000540846 BARGINQ6ZT62 677 aa16.26■□□□□ 0.19
SMAD3-204ENST00000540846 WDR63Q8IWG1 891 aa16.26■□□□□ 0.19
SMAD3-204ENST00000540846 GAS2L2Q8NHY3 880 aa16.26■□□□□ 0.19
SMAD3-204ENST00000540846 TNS2Q63HR2 1409 aa16.25■□□□□ 0.19
SMAD3-204ENST00000540846 NEFMP07197 916 aa16.25■□□□□ 0.19
SMAD3-204ENST00000540846 NEUROD2Q15784 382 aa16.25■□□□□ 0.19
SMAD3-204ENST00000540846 AMOTQ4VCS5 1084 aa16.25■□□□□ 0.19
SMAD3-204ENST00000540846 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
SMAD3-204ENST00000540846 MAP3K5Q99683 1374 aa16.24■□□□□ 0.19
SMAD3-204ENST00000540846 PLEKHO1Q53GL0 409 aaPredicted RBP16.24■□□□□ 0.19
SMAD3-204ENST00000540846 CYP27B1O15528 508 aa16.23■□□□□ 0.19
SMAD3-204ENST00000540846 KDM6AO15550 1401 aaPredicted RBP16.22■□□□□ 0.19
SMAD3-204ENST00000540846 ZNF530Q6P9A1 599 aaPredicted RBP16.22■□□□□ 0.19
SMAD3-204ENST00000540846 CEMIPQ8WUJ3 1361 aa16.22■□□□□ 0.19
SMAD3-204ENST00000540846 GJD4Q96KN9 370 aaPredicted RBP16.21■□□□□ 0.19
SMAD3-204ENST00000540846 TRPC5Q9UL62 973 aaPredicted RBP16.21■□□□□ 0.19
SMAD3-204ENST00000540846 SPG7Q9UQ90 795 aa16.21■□□□□ 0.19
SMAD3-204ENST00000540846 MRC1P22897 1456 aa16.21■□□□□ 0.19
SMAD3-204ENST00000540846 GNAT3A8MTJ3 354 aa16.21■□□□□ 0.18
SMAD3-204ENST00000540846 PHKG2P15735 406 aa16.21■□□□□ 0.18
SMAD3-204ENST00000540846 AKAP4Q5JQC9 854 aa16.21■□□□□ 0.18
SMAD3-204ENST00000540846 ZCRB1Q8TBF4 217 aaKnown RBP16.21■□□□□ 0.18
SMAD3-204ENST00000540846 THUMPD2Q9BTF0 503 aaKnown RBP16.21■□□□□ 0.18
SMAD3-204ENST00000540846 CDCA7Q9BWT1 371 aaPredicted RBP16.21■□□□□ 0.18
SMAD3-204ENST00000540846 CCDC9Q9Y3X0 531 aaKnown RBP16.21■□□□□ 0.18
SMAD3-204ENST00000540846 HTATSF1O43719 755 aaKnown RBP16.2■□□□□ 0.18
SMAD3-204ENST00000540846 DCTN1Q14203 1278 aa16.2■□□□□ 0.18
SMAD3-204ENST00000540846 RGS17Q9UGC6 210 aaPredicted RBP16.2■□□□□ 0.18
SMAD3-204ENST00000540846 BRWD3Q6RI45 1802 aa16.2■□□□□ 0.18
SMAD3-204ENST00000540846 PCDH11XQ9BZA7 1347 aa16.19■□□□□ 0.18
SMAD3-204ENST00000540846 PCDH11YQ9BZA8 1340 aa16.19■□□□□ 0.18
SMAD3-204ENST00000540846 ONECUT3O60422 494 aaPredicted RBP16.19■□□□□ 0.18
SMAD3-204ENST00000540846 LMOD3Q0VAK6 560 aa16.19■□□□□ 0.18
SMAD3-204ENST00000540846 FAM98CQ17RN3 349 aaKnown RBP16.19■□□□□ 0.18
SMAD3-204ENST00000540846 IL17REQ8NFR9 667 aa16.19■□□□□ 0.18
SMAD3-204ENST00000540846 IL16Q14005 1332 aa16.19■□□□□ 0.18
SMAD3-204ENST00000540846 KDM3BQ7LBC6 1761 aa16.18■□□□□ 0.18
SMAD3-204ENST00000540846 MCM10Q7L590 875 aa16.18■□□□□ 0.18
SMAD3-204ENST00000540846 QTRT2Q9H974 415 aaKnown RBP16.18■□□□□ 0.18
SMAD3-204ENST00000540846 ITGB4P16144 1822 aa16.18■□□□□ 0.18
SMAD3-204ENST00000540846 DOT1LQ8TEK3 1739 aa16.18■□□□□ 0.18
SMAD3-204ENST00000540846 NKX1-1Q15270 411 aaPredicted RBP16.17■□□□□ 0.18
SMAD3-204ENST00000540846 IFNL2Q8IZJ0 200 aa16.17■□□□□ 0.18
SMAD3-204ENST00000540846 C1orf141Q5JVX7 400 aa16.17■□□□□ 0.18
SMAD3-204ENST00000540846 ZNF772Q68DY9 489 aaPredicted RBP16.17■□□□□ 0.18
SMAD3-204ENST00000540846 MYH16Q9H6N6 1097 aa16.17■□□□□ 0.18
SMAD3-204ENST00000540846 LGR6Q9HBX8 967 aa16.17■□□□□ 0.18
SMAD3-204ENST00000540846 MPRIPQ6WCQ1 1025 aa16.16■□□□□ 0.18
SMAD3-204ENST00000540846 PAPPAQ13219 1627 aa16.15■□□□□ 0.18
SMAD3-204ENST00000540846 RNMTO43148 476 aaKnown RBP16.15■□□□□ 0.18
SMAD3-204ENST00000540846 ZNF853P0CG23 659 aa16.15■□□□□ 0.18
SMAD3-204ENST00000540846 EXOC5O00471 708 aa16.14■□□□□ 0.17
SMAD3-204ENST00000540846 DDB1Q16531 1140 aa16.14■□□□□ 0.17
SMAD3-204ENST00000540846 B4GALNT3Q6L9W6 998 aa16.14■□□□□ 0.17
SMAD3-204ENST00000540846 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-204ENST00000540846 PLIN1O60240 522 aa16.13■□□□□ 0.17
SMAD3-204ENST00000540846 DDX54Q8TDD1 881 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms