RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 EVA1CP58658 441 aa16.49■□□□□ 0.23
LMO3-223ENST00000540590 RRP7AQ9Y3A4 280 aaKnown RBP16.49■□□□□ 0.23
LMO3-223ENST00000540590 SALL2Q9Y467 1007 aaPredicted RBP16.49■□□□□ 0.23
LMO3-223ENST00000540590 CRB1P82279 1406 aa16.48■□□□□ 0.23
LMO3-223ENST00000540590 TMPOP42166 694 aaKnown RBP16.48■□□□□ 0.23
LMO3-223ENST00000540590 POLA2Q14181 598 aa16.48■□□□□ 0.23
LMO3-223ENST00000540590 LARP1Q6PKG0 1096 aaKnown RBP16.48■□□□□ 0.23
LMO3-223ENST00000540590 TOM1L2Q6ZVM7 507 aa16.48■□□□□ 0.23
LMO3-223ENST00000540590 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.48■□□□□ 0.23
LMO3-223ENST00000540590 PARP4Q9UKK3 1724 aaKnown RBP16.48■□□□□ 0.23
LMO3-223ENST00000540590 WNK3Q9BYP7 1800 aa16.47■□□□□ 0.23
LMO3-223ENST00000540590 NEUROD2Q15784 382 aa16.46■□□□□ 0.23
LMO3-223ENST00000540590 NFE2L2Q16236 605 aa16.46■□□□□ 0.23
LMO3-223ENST00000540590 C8orf37Q96NL8 207 aa16.46■□□□□ 0.23
LMO3-223ENST00000540590 CARD10Q9BWT7 1032 aa16.46■□□□□ 0.23
LMO3-223ENST00000540590 MEGF6O75095 1541 aa16.45■□□□□ 0.22
LMO3-223ENST00000540590 PKD1L3Q7Z443 1732 aa16.45■□□□□ 0.22
LMO3-223ENST00000540590 NGLY1Q96IV0 654 aa16.45■□□□□ 0.22
LMO3-223ENST00000540590 VIRMAQ69YN4 1812 aaKnown RBP16.44■□□□□ 0.22
LMO3-223ENST00000540590 ZNF521Q96K83 1311 aa16.44■□□□□ 0.22
LMO3-223ENST00000540590 BCL9LQ86UU0 1499 aa16.43■□□□□ 0.22
LMO3-223ENST00000540590 RIPK4P57078 832 aa16.43■□□□□ 0.22
LMO3-223ENST00000540590 CCDC27Q2M243 656 aa16.43■□□□□ 0.22
LMO3-223ENST00000540590 MTHFSDQ2M296 383 aaKnown RBP16.43■□□□□ 0.22
LMO3-223ENST00000540590 MEX3CQ5U5Q3 659 aaKnown RBP16.43■□□□□ 0.22
LMO3-223ENST00000540590 RAPGEF4Q8WZA2 1011 aa16.43■□□□□ 0.22
LMO3-223ENST00000540590 TATP17735 454 aaPredicted RBP16.42■□□□□ 0.22
LMO3-223ENST00000540590 FNBP4Q8N3X1 1017 aaPredicted RBP16.42■□□□□ 0.22
LMO3-223ENST00000540590 TRIM35Q9UPQ4 493 aa16.42■□□□□ 0.22
LMO3-223ENST00000540590 UNC5CLQ8IV45 518 aa16.41■□□□□ 0.22
LMO3-223ENST00000540590 WWC1Q8IX03 1113 aa16.41■□□□□ 0.22
LMO3-223ENST00000540590 GAS2L2Q8NHY3 880 aa16.41■□□□□ 0.22
LMO3-223ENST00000540590 SHANK3Q9BYB0 1731 aa16.41■□□□□ 0.22
LMO3-223ENST00000540590 OVOS2A0A0G2JMS6 1433 aa16.4■□□□□ 0.22
LMO3-223ENST00000540590 PLEKHO1Q53GL0 409 aaPredicted RBP16.4■□□□□ 0.22
LMO3-223ENST00000540590 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.4■□□□□ 0.22
LMO3-223ENST00000540590 USP35Q9P2H5 1018 aa16.4■□□□□ 0.22
LMO3-223ENST00000540590 DISP2A7MBM2 1401 aa16.39■□□□□ 0.21
LMO3-223ENST00000540590 AMOTQ4VCS5 1084 aa16.39■□□□□ 0.21
LMO3-223ENST00000540590 SPATA31A1Q5TZJ5 1347 aa16.39■□□□□ 0.21
LMO3-223ENST00000540590 IL2RBP14784 551 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 LMOD3Q0VAK6 560 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 CHRDL2Q6WN34 429 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 CDCA7Q9BWT1 371 aaPredicted RBP16.38■□□□□ 0.21
LMO3-223ENST00000540590 USP21Q9UK80 565 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 THRAP3Q9Y2W1 955 aaKnown RBP16.38■□□□□ 0.21
LMO3-223ENST00000540590 AFF2P51816 1311 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 MAP3K5Q99683 1374 aa16.38■□□□□ 0.21
LMO3-223ENST00000540590 LRRC37A3O60309 1634 aa16.37■□□□□ 0.21
LMO3-223ENST00000540590 CENPBP07199 599 aaPredicted RBP16.37■□□□□ 0.21
LMO3-223ENST00000540590 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
LMO3-223ENST00000540590 VPS72Q15906 364 aa16.37■□□□□ 0.21
LMO3-223ENST00000540590 ZNF530Q6P9A1 599 aaPredicted RBP16.37■□□□□ 0.21
LMO3-223ENST00000540590 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 WDR63Q8IWG1 891 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 CDCA7LQ96GN5 454 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 SPG7Q9UQ90 795 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 ADAMTS7Q9UKP4 1686 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 SCN11AQ9UI33 1791 aa16.36■□□□□ 0.21
LMO3-223ENST00000540590 GNAT3A8MTJ3 354 aa16.35■□□□□ 0.21
LMO3-223ENST00000540590 HTATSF1O43719 755 aaKnown RBP16.35■□□□□ 0.21
LMO3-223ENST00000540590 DCTN1Q14203 1278 aa16.35■□□□□ 0.21
LMO3-223ENST00000540590 THUMPD2Q9BTF0 503 aaKnown RBP16.35■□□□□ 0.21
LMO3-223ENST00000540590 CCDC9Q9Y3X0 531 aaKnown RBP16.35■□□□□ 0.21
LMO3-223ENST00000540590 GLI3P10071 1580 aa16.34■□□□□ 0.21
LMO3-223ENST00000540590 CALD1Q05682 793 aaKnown RBP16.34■□□□□ 0.21
LMO3-223ENST00000540590 AKAP4Q5JQC9 854 aa16.34■□□□□ 0.21
LMO3-223ENST00000540590 ATRNO75882 1429 aa16.34■□□□□ 0.21
LMO3-223ENST00000540590 SLFN5Q08AF3 891 aa16.33■□□□□ 0.2
LMO3-223ENST00000540590 C1orf141Q5JVX7 400 aa16.33■□□□□ 0.2
LMO3-223ENST00000540590 MCM10Q7L590 875 aa16.33■□□□□ 0.2
LMO3-223ENST00000540590 ZCRB1Q8TBF4 217 aaKnown RBP16.33■□□□□ 0.2
LMO3-223ENST00000540590 RTF1Q92541 710 aaKnown RBP16.33■□□□□ 0.2
LMO3-223ENST00000540590 CYP27B1O15528 508 aa16.32■□□□□ 0.2
LMO3-223ENST00000540590 PHKG2P15735 406 aa16.32■□□□□ 0.2
LMO3-223ENST00000540590 IL16Q14005 1332 aa16.32■□□□□ 0.2
LMO3-223ENST00000540590 BARGINQ6ZT62 677 aa16.32■□□□□ 0.2
LMO3-223ENST00000540590 SIPA1L3O60292 1781 aaPredicted RBP16.31■□□□□ 0.2
LMO3-223ENST00000540590 THSD7AQ9UPZ6 1657 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 TNS2Q63HR2 1409 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 PCDH11XQ9BZA7 1347 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 PCDH11YQ9BZA8 1340 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 E9PSI1 815 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 TRMT2AQ8IZ69 625 aaKnown RBP16.31■□□□□ 0.2
LMO3-223ENST00000540590 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
LMO3-223ENST00000540590 CEMIPQ8WUJ3 1361 aa16.3■□□□□ 0.2
LMO3-223ENST00000540590 DUSP27Q5VZP5 1158 aa16.3■□□□□ 0.2
LMO3-223ENST00000540590 IFNL2Q8IZJ0 200 aa16.3■□□□□ 0.2
LMO3-223ENST00000540590 TRPC5Q9UL62 973 aaPredicted RBP16.3■□□□□ 0.2
LMO3-223ENST00000540590 KDM6AO15550 1401 aaPredicted RBP16.29■□□□□ 0.2
LMO3-223ENST00000540590 RNMTO43148 476 aaKnown RBP16.29■□□□□ 0.2
LMO3-223ENST00000540590 HSP90AB1P08238 724 aaKnown RBP16.29■□□□□ 0.2
LMO3-223ENST00000540590 MPRIPQ6WCQ1 1025 aa16.29■□□□□ 0.2
LMO3-223ENST00000540590 LGR6Q9HBX8 967 aa16.29■□□□□ 0.2
LMO3-223ENST00000540590 TOGARAM1Q9Y4F4 1720 aa16.28■□□□□ 0.2
LMO3-223ENST00000540590 FAM98CQ17RN3 349 aaKnown RBP16.28■□□□□ 0.2
LMO3-223ENST00000540590 GJD4Q96KN9 370 aaPredicted RBP16.28■□□□□ 0.2
LMO3-223ENST00000540590 EXOC5O00471 708 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms