RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 EIF4A2Q14240 407 aaKnown RBP20.59■□□□□ 0.89
UBE3B-212ENST00000540230 CC2D1BQ5T0F9 858 aaKnown RBP20.59■□□□□ 0.89
UBE3B-212ENST00000540230 EYA1Q99502 592 aa20.59■□□□□ 0.89
UBE3B-212ENST00000540230 BCL11BQ9C0K0 894 aaPredicted RBP20.59■□□□□ 0.89
UBE3B-212ENST00000540230 ZCRB1Q8TBF4 217 aaKnown RBP20.58■□□□□ 0.88
UBE3B-212ENST00000540230 RAPGEF4Q8WZA2 1011 aa20.58■□□□□ 0.88
UBE3B-212ENST00000540230 RGPD3A6NKT7 1758 aaPredicted RBP20.57■□□□□ 0.88
UBE3B-212ENST00000540230 RGPD4Q7Z3J3 1758 aa20.57■□□□□ 0.88
UBE3B-212ENST00000540230 CNGB1Q14028 1251 aaPredicted RBP20.57■□□□□ 0.88
UBE3B-212ENST00000540230 KAT6BQ8WYB5 2073 aa20.56■□□□□ 0.88
UBE3B-212ENST00000540230 PARD3Q8TEW0 1356 aa20.56■□□□□ 0.88
UBE3B-212ENST00000540230 DOT1LQ8TEK3 1739 aa20.56■□□□□ 0.88
UBE3B-212ENST00000540230 TATP17735 454 aaPredicted RBP20.56■□□□□ 0.88
UBE3B-212ENST00000540230 PKD1L3Q7Z443 1732 aa20.55■□□□□ 0.88
UBE3B-212ENST00000540230 BTAF1O14981 1849 aa20.55■□□□□ 0.88
UBE3B-212ENST00000540230 NPC1L1Q9UHC9 1359 aa20.54■□□□□ 0.88
UBE3B-212ENST00000540230 PSDA5PKW4 1024 aaPredicted RBP20.53■□□□□ 0.88
UBE3B-212ENST00000540230 PLSCR1O15162 318 aa20.53■□□□□ 0.88
UBE3B-212ENST00000540230 IGSF1Q8N6C5 1336 aa20.52■□□□□ 0.88
UBE3B-212ENST00000540230 PROM2Q8N271 834 aa20.51■□□□□ 0.87
UBE3B-212ENST00000540230 CYP27B1O15528 508 aa20.5■□□□□ 0.87
UBE3B-212ENST00000540230 MTHFSP49914 203 aa20.5■□□□□ 0.87
UBE3B-212ENST00000540230 R3HDM1Q15032 1099 aaKnown RBP20.49■□□□□ 0.87
UBE3B-212ENST00000540230 TOGARAM1Q9Y4F4 1720 aa20.49■□□□□ 0.87
UBE3B-212ENST00000540230 PCDH11XQ9BZA7 1347 aa20.49■□□□□ 0.87
UBE3B-212ENST00000540230 PCDH11YQ9BZA8 1340 aa20.49■□□□□ 0.87
UBE3B-212ENST00000540230 IL13P35225 146 aa20.48■□□□□ 0.87
UBE3B-212ENST00000540230 PRIM1P49642 420 aaKnown RBP20.48■□□□□ 0.87
UBE3B-212ENST00000540230 AEBP1Q8IUX7 1158 aa20.48■□□□□ 0.87
UBE3B-212ENST00000540230 SYTL4Q96C24 671 aaPredicted RBP20.47■□□□□ 0.87
UBE3B-212ENST00000540230 TXNRD1Q16881 649 aa20.46■□□□□ 0.87
UBE3B-212ENST00000540230 ANO8Q9HCE9 1232 aaPredicted RBP20.46■□□□□ 0.87
UBE3B-212ENST00000540230 COL3A1P02461 1466 aaPredicted RBP20.45■□□□□ 0.86
UBE3B-212ENST00000540230 SPG7Q9UQ90 795 aa20.43■□□□□ 0.86
UBE3B-212ENST00000540230 ITGB4P16144 1822 aa20.43■□□□□ 0.86
UBE3B-212ENST00000540230 SULT6B1Q6IMI4 303 aa20.42■□□□□ 0.86
UBE3B-212ENST00000540230 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.42■□□□□ 0.86
UBE3B-212ENST00000540230 PAPPAQ13219 1627 aa20.41■□□□□ 0.86
UBE3B-212ENST00000540230 KDRP35968 1356 aa20.41■□□□□ 0.86
UBE3B-212ENST00000540230 LY75O60449 1722 aa20.41■□□□□ 0.86
UBE3B-212ENST00000540230 PHKG2P15735 406 aa20.4■□□□□ 0.86
UBE3B-212ENST00000540230 NBPF14Q5TI25 921 aa20.4■□□□□ 0.86
UBE3B-212ENST00000540230 LRRC4BQ9NT99 713 aa20.4■□□□□ 0.86
UBE3B-212ENST00000540230 NKX1-1Q15270 411 aaPredicted RBP20.39■□□□□ 0.85
UBE3B-212ENST00000540230 PLEKHG2Q9H7P9 1386 aa20.39■□□□□ 0.85
UBE3B-212ENST00000540230 DIAPH1O60610 1272 aaKnown RBP20.37■□□□□ 0.85
UBE3B-212ENST00000540230 HMOX1P09601 288 aa20.37■□□□□ 0.85
UBE3B-212ENST00000540230 KCNQ4P56696 695 aa20.37■□□□□ 0.85
UBE3B-212ENST00000540230 IFNL2Q8IZJ0 200 aa20.37■□□□□ 0.85
UBE3B-212ENST00000540230 MPRIPQ6WCQ1 1025 aa20.37■□□□□ 0.85
UBE3B-212ENST00000540230 LRP5O75197 1615 aa20.36■□□□□ 0.85
UBE3B-212ENST00000540230 PPP2R1AP30153 589 aa20.36■□□□□ 0.85
UBE3B-212ENST00000540230 PLEKHO1Q53GL0 409 aaPredicted RBP20.35■□□□□ 0.85
UBE3B-212ENST00000540230 PDGFDQ9GZP0 370 aaPredicted RBP20.35■□□□□ 0.85
UBE3B-212ENST00000540230 CASZ1Q86V15 1759 aa20.35■□□□□ 0.85
UBE3B-212ENST00000540230 ZNF530Q6P9A1 599 aaPredicted RBP20.34■□□□□ 0.85
UBE3B-212ENST00000540230 KDM6AO15550 1401 aaPredicted RBP20.34■□□□□ 0.85
UBE3B-212ENST00000540230 DDX10Q13206 875 aaKnown RBP20.33■□□□□ 0.85
UBE3B-212ENST00000540230 PIGBQ92521 554 aa20.33■□□□□ 0.85
UBE3B-212ENST00000540230 SLC15A2Q16348 729 aa20.32■□□□□ 0.84
UBE3B-212ENST00000540230 ZNF827Q17R98 1081 aa20.32■□□□□ 0.84
UBE3B-212ENST00000540230 AMOTQ4VCS5 1084 aa20.32■□□□□ 0.84
UBE3B-212ENST00000540230 ZEB1P37275 1124 aaPredicted RBP20.32■□□□□ 0.84
UBE3B-212ENST00000540230 STK32BQ9NY57 414 aa20.32■□□□□ 0.84
UBE3B-212ENST00000540230 PALLDQ8WX93 1383 aa20.31■□□□□ 0.84
UBE3B-212ENST00000540230 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
UBE3B-212ENST00000540230 SLC27A3Q5K4L6 730 aa20.31■□□□□ 0.84
UBE3B-212ENST00000540230 TUBGCP6Q96RT7 1819 aa20.3■□□□□ 0.84
UBE3B-212ENST00000540230 CCNL1Q9UK58 526 aaPredicted RBP20.29■□□□□ 0.84
UBE3B-212ENST00000540230 AKT1S1Q96B36 256 aa20.28■□□□□ 0.84
UBE3B-212ENST00000540230 TMOD3Q9NYL9 352 aa20.28■□□□□ 0.84
UBE3B-212ENST00000540230 TAF1LQ8IZX4 1826 aa20.28■□□□□ 0.84
UBE3B-212ENST00000540230 C5P01031 1676 aa20.28■□□□□ 0.84
UBE3B-212ENST00000540230 SCN11AQ9UI33 1791 aa20.27■□□□□ 0.84
UBE3B-212ENST00000540230 DCAF5Q96JK2 942 aa20.27■□□□□ 0.84
UBE3B-212ENST00000540230 ASAP1Q9ULH1 1129 aa20.27■□□□□ 0.84
UBE3B-212ENST00000540230 VIRMAQ69YN4 1812 aaKnown RBP20.27■□□□□ 0.84
UBE3B-212ENST00000540230 MTHFSDQ2M296 383 aaKnown RBP20.27■□□□□ 0.83
UBE3B-212ENST00000540230 C1orf141Q5JVX7 400 aa20.27■□□□□ 0.83
UBE3B-212ENST00000540230 CFAP53Q96M91 514 aa20.27■□□□□ 0.83
UBE3B-212ENST00000540230 HSP90AB1P08238 724 aaKnown RBP20.26■□□□□ 0.83
UBE3B-212ENST00000540230 QSER1Q2KHR3 1735 aa20.24■□□□□ 0.83
UBE3B-212ENST00000540230 ERVV-2B6SEH9 535 aa20.24■□□□□ 0.83
UBE3B-212ENST00000540230 ATG3Q9NT62 314 aa20.24■□□□□ 0.83
UBE3B-212ENST00000540230 ZBTB7AO95365 584 aa20.23■□□□□ 0.83
UBE3B-212ENST00000540230 AKAP4Q5JQC9 854 aa20.23■□□□□ 0.83
UBE3B-212ENST00000540230 SMARCC1Q92922 1105 aaPredicted RBP20.23■□□□□ 0.83
UBE3B-212ENST00000540230 ADAMTS7Q9UKP4 1686 aa20.23■□□□□ 0.83
UBE3B-212ENST00000540230 RSPH6AQ9H0K4 717 aa20.22■□□□□ 0.83
UBE3B-212ENST00000540230 LGR6Q9HBX8 967 aa20.22■□□□□ 0.83
UBE3B-212ENST00000540230 PNPLA7Q6ZV29 1317 aa20.22■□□□□ 0.83
UBE3B-212ENST00000540230 CABP4P57796 275 aa20.22■□□□□ 0.83
UBE3B-212ENST00000540230 LOC102724428A0A0B4J2F2 783 aa20.21■□□□□ 0.83
UBE3B-212ENST00000540230 PRKAR2BP31323 418 aa20.21■□□□□ 0.83
UBE3B-212ENST00000540230 SIK1P57059 783 aa20.21■□□□□ 0.83
UBE3B-212ENST00000540230 C4BP0C0L5 1744 aa20.21■□□□□ 0.83
UBE3B-212ENST00000540230 U2AF1L5P0DN76 240 aaPredicted RBP20.2■□□□□ 0.82
UBE3B-212ENST00000540230 U2AF1Q01081 240 aaKnown RBP eCLIP20.2■□□□□ 0.82
UBE3B-212ENST00000540230 NFATC2IPQ8NCF5 419 aa20.2■□□□□ 0.82
UBE3B-212ENST00000540230 PHACTR3Q96KR7 559 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms