RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 NPC1L1Q9UHC9 1359 aa14.6□□□□□ -0.07
HMGA2-209ENST00000539662 BCL9O00512 1426 aa14.59□□□□□ -0.07
HMGA2-209ENST00000539662 NHSQ6T4R5 1651 aa14.59□□□□□ -0.07
HMGA2-209ENST00000539662 ZCRB1Q8TBF4 217 aaKnown RBP14.59□□□□□ -0.07
HMGA2-209ENST00000539662 IL13P35225 146 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 AEBP1Q8IUX7 1158 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 RAPGEF4Q8WZA2 1011 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 RREB1Q92766 1687 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 PKD1L3Q7Z443 1732 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 DOT1LQ8TEK3 1739 aa14.58□□□□□ -0.08
HMGA2-209ENST00000539662 KAT6BQ8WYB5 2073 aa14.57□□□□□ -0.08
HMGA2-209ENST00000539662 TATP17735 454 aaPredicted RBP14.57□□□□□ -0.08
HMGA2-209ENST00000539662 BCL11BQ9C0K0 894 aaPredicted RBP14.57□□□□□ -0.08
HMGA2-209ENST00000539662 IGSF1Q8N6C5 1336 aa14.57□□□□□ -0.08
HMGA2-209ENST00000539662 NUP188Q5SRE5 1749 aa14.56□□□□□ -0.08
HMGA2-209ENST00000539662 CYP27B1O15528 508 aa14.56□□□□□ -0.08
HMGA2-209ENST00000539662 DDX10Q13206 875 aaKnown RBP14.56□□□□□ -0.08
HMGA2-209ENST00000539662 PROM2Q8N271 834 aa14.56□□□□□ -0.08
HMGA2-209ENST00000539662 BTAF1O14981 1849 aa14.56□□□□□ -0.08
HMGA2-209ENST00000539662 COL3A1P02461 1466 aaPredicted RBP14.56□□□□□ -0.08
HMGA2-209ENST00000539662 TOGARAM1Q9Y4F4 1720 aa14.55□□□□□ -0.08
HMGA2-209ENST00000539662 PSDA5PKW4 1024 aaPredicted RBP14.53□□□□□ -0.08
HMGA2-209ENST00000539662 ZEB1P37275 1124 aaPredicted RBP14.53□□□□□ -0.08
HMGA2-209ENST00000539662 PRIM1P49642 420 aaKnown RBP14.53□□□□□ -0.08
HMGA2-209ENST00000539662 PPP2R1AP30153 589 aa14.52□□□□□ -0.09
HMGA2-209ENST00000539662 SULT6B1Q6IMI4 303 aa14.52□□□□□ -0.09
HMGA2-209ENST00000539662 RGPD3A6NKT7 1758 aaPredicted RBP14.52□□□□□ -0.09
HMGA2-209ENST00000539662 RGPD4Q7Z3J3 1758 aa14.52□□□□□ -0.09
HMGA2-209ENST00000539662 PCDH11XQ9BZA7 1347 aa14.51□□□□□ -0.09
HMGA2-209ENST00000539662 PCDH11YQ9BZA8 1340 aa14.51□□□□□ -0.09
HMGA2-209ENST00000539662 PLSCR1O15162 318 aa14.51□□□□□ -0.09
HMGA2-209ENST00000539662 HMOX1P09601 288 aa14.51□□□□□ -0.09
HMGA2-209ENST00000539662 SYTL4Q96C24 671 aaPredicted RBP14.51□□□□□ -0.09
HMGA2-209ENST00000539662 ITGB4P16144 1822 aa14.5□□□□□ -0.09
HMGA2-209ENST00000539662 DIAPH1O60610 1272 aaKnown RBP14.5□□□□□ -0.09
HMGA2-209ENST00000539662 KDRP35968 1356 aa14.49□□□□□ -0.09
HMGA2-209ENST00000539662 KCNQ4P56696 695 aa14.49□□□□□ -0.09
HMGA2-209ENST00000539662 R3HDM1Q15032 1099 aaKnown RBP14.49□□□□□ -0.09
HMGA2-209ENST00000539662 TXNRD1Q16881 649 aa14.49□□□□□ -0.09
HMGA2-209ENST00000539662 PARD3Q8TEW0 1356 aa14.48□□□□□ -0.09
HMGA2-209ENST00000539662 PHKG2P15735 406 aa14.48□□□□□ -0.09
HMGA2-209ENST00000539662 ANO8Q9HCE9 1232 aaPredicted RBP14.48□□□□□ -0.09
HMGA2-209ENST00000539662 SPG7Q9UQ90 795 aa14.48□□□□□ -0.09
HMGA2-209ENST00000539662 SRCAPQ6ZRS2 3230 aa14.48□□□□□ -0.09
HMGA2-209ENST00000539662 NKX1-1Q15270 411 aaPredicted RBP14.47□□□□□ -0.09
HMGA2-209ENST00000539662 LRRC4BQ9NT99 713 aa14.47□□□□□ -0.09
HMGA2-209ENST00000539662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.47□□□□□ -0.09
HMGA2-209ENST00000539662 U2SURPO15042 1029 aaKnown RBP14.46□□□□□ -0.09
HMGA2-209ENST00000539662 MPRIPQ6WCQ1 1025 aa14.46□□□□□ -0.09
HMGA2-209ENST00000539662 LY75O60449 1722 aa14.46□□□□□ -0.1
HMGA2-209ENST00000539662 KDM6AO15550 1401 aaPredicted RBP14.45□□□□□ -0.1
HMGA2-209ENST00000539662 ZNF530Q6P9A1 599 aaPredicted RBP14.45□□□□□ -0.1
HMGA2-209ENST00000539662 IFNL2Q8IZJ0 200 aa14.45□□□□□ -0.1
HMGA2-209ENST00000539662 PDGFDQ9GZP0 370 aaPredicted RBP14.45□□□□□ -0.1
HMGA2-209ENST00000539662 PAPPAQ13219 1627 aa14.44□□□□□ -0.1
HMGA2-209ENST00000539662 PLEKHO1Q53GL0 409 aaPredicted RBP14.44□□□□□ -0.1
HMGA2-209ENST00000539662 PIGBQ92521 554 aa14.44□□□□□ -0.1
HMGA2-209ENST00000539662 MTHFSDQ2M296 383 aaKnown RBP14.42□□□□□ -0.1
HMGA2-209ENST00000539662 VIRMAQ69YN4 1812 aaKnown RBP14.42□□□□□ -0.1
HMGA2-209ENST00000539662 ZNF827Q17R98 1081 aa14.41□□□□□ -0.1
HMGA2-209ENST00000539662 AMOTQ4VCS5 1084 aa14.41□□□□□ -0.1
HMGA2-209ENST00000539662 PHACTR3Q96KR7 559 aa14.41□□□□□ -0.1
HMGA2-209ENST00000539662 SCN11AQ9UI33 1791 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 PLEKHG2Q9H7P9 1386 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 NBPF14Q5TI25 921 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 CFAP53Q96M91 514 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 RSPH6AQ9H0K4 717 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 LGR6Q9HBX8 967 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 ASAP1Q9ULH1 1129 aa14.4□□□□□ -0.1
HMGA2-209ENST00000539662 TUBGCP6Q96RT7 1819 aa14.39□□□□□ -0.11
HMGA2-209ENST00000539662 PALLDQ8WX93 1383 aa14.39□□□□□ -0.11
HMGA2-209ENST00000539662 ZNF316A6NFI3 1004 aaPredicted RBP14.39□□□□□ -0.11
HMGA2-209ENST00000539662 CASZ1Q86V15 1759 aa14.39□□□□□ -0.11
HMGA2-209ENST00000539662 U2AF1L5P0DN76 240 aaPredicted RBP14.38□□□□□ -0.11
HMGA2-209ENST00000539662 PRKAR2BP31323 418 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 U2AF1Q01081 240 aaKnown RBP eCLIP14.38□□□□□ -0.118e-8■■□□□ 13.6
HMGA2-209ENST00000539662 SLC15A2Q16348 729 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 DCAF5Q96JK2 942 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 ATG3Q9NT62 314 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 TMOD3Q9NYL9 352 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 TAF1LQ8IZX4 1826 aa14.38□□□□□ -0.11
HMGA2-209ENST00000539662 RALBP1Q15311 655 aa14.37□□□□□ -0.11
HMGA2-209ENST00000539662 C1orf141Q5JVX7 400 aa14.37□□□□□ -0.11
HMGA2-209ENST00000539662 AKT1S1Q96B36 256 aa14.37□□□□□ -0.11
HMGA2-209ENST00000539662 CCNL1Q9UK58 526 aaPredicted RBP14.37□□□□□ -0.11
HMGA2-209ENST00000539662 C5P01031 1676 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 ADAMTS7Q9UKP4 1686 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 AKAP4Q5JQC9 854 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 SMIM5Q71RC9 77 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 NFATC2IPQ8NCF5 419 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 SLC4A9Q96Q91 983 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 STK32BQ9NY57 414 aa14.36□□□□□ -0.11
HMGA2-209ENST00000539662 ERVV-2B6SEH9 535 aa14.35□□□□□ -0.11
HMGA2-209ENST00000539662 RNMTO43148 476 aaKnown RBP14.35□□□□□ -0.11
HMGA2-209ENST00000539662 SLC27A3Q5K4L6 730 aa14.35□□□□□ -0.11
HMGA2-209ENST00000539662 AMIGO3Q86WK7 504 aa14.35□□□□□ -0.11
HMGA2-209ENST00000539662 PRKRIP1Q9H875 184 aaPredicted RBP14.35□□□□□ -0.11
HMGA2-209ENST00000539662 HSP90AB1P08238 724 aaKnown RBP14.34□□□□□ -0.11
HMGA2-209ENST00000539662 CABP4P57796 275 aa14.34□□□□□ -0.11
HMGA2-209ENST00000539662 ITPK1Q13572 414 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms