RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 TSPYL6Q8N831 410 aa23.63■■□□□ 1.37
SMPD1-210ENST00000534405 NUDT16Q96DE0 195 aaKnown RBP23.63■■□□□ 1.37
SMPD1-210ENST00000534405 KLHL40Q2TBA0 621 aa23.62■■□□□ 1.37
SMPD1-210ENST00000534405 ZNF445P59923 1031 aa23.62■■□□□ 1.37
SMPD1-210ENST00000534405 VAMP4O75379 141 aa23.61■■□□□ 1.37
SMPD1-210ENST00000534405 RRS1Q15050 365 aaKnown RBP23.61■■□□□ 1.37
SMPD1-210ENST00000534405 CDK12Q9NYV4 1490 aaPredicted RBP23.61■■□□□ 1.37
SMPD1-210ENST00000534405 BRPF1P55201 1214 aaPredicted RBP23.6■■□□□ 1.37
SMPD1-210ENST00000534405 MFAP1P55081 439 aaKnown RBP23.59■■□□□ 1.37
SMPD1-210ENST00000534405 AATKQ6ZMQ8 1374 aa23.59■■□□□ 1.37
SMPD1-210ENST00000534405 CLEC17AQ6ZS10 378 aa23.59■■□□□ 1.37
SMPD1-210ENST00000534405 MYRIPQ8NFW9 859 aa23.59■■□□□ 1.37
SMPD1-210ENST00000534405 MRPL50Q8N5N7 158 aaKnown RBP23.58■■□□□ 1.37
SMPD1-210ENST00000534405 ELL2O00472 640 aaPredicted RBP23.58■■□□□ 1.36
SMPD1-210ENST00000534405 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.58■■□□□ 1.36
SMPD1-210ENST00000534405 MBIPQ9NS73 344 aa23.58■■□□□ 1.36
SMPD1-210ENST00000534405 ZNF853P0CG23 659 aa23.57■■□□□ 1.36
SMPD1-210ENST00000534405 CCDC61Q9Y6R9 512 aa23.57■■□□□ 1.36
SMPD1-210ENST00000534405 MON2Q7Z3U7 1717 aa23.57■■□□□ 1.36
SMPD1-210ENST00000534405 ZNF428Q96B54 188 aa23.57■■□□□ 1.36
SMPD1-210ENST00000534405 PRR36Q9H6K5 1346 aa23.56■■□□□ 1.36
SMPD1-210ENST00000534405 COG3Q96JB2 828 aa23.56■■□□□ 1.36
SMPD1-210ENST00000534405 IFT57Q9NWB7 429 aa23.56■■□□□ 1.36
SMPD1-210ENST00000534405 CBX1P83916 185 aa23.55■■□□□ 1.36
SMPD1-210ENST00000534405 NUCB1Q02818 461 aa23.55■■□□□ 1.36
SMPD1-210ENST00000534405 DLG5Q8TDM6 1919 aa23.55■■□□□ 1.36
SMPD1-210ENST00000534405 GOLGA6L22H0YM25 854 aa23.55■■□□□ 1.36
SMPD1-210ENST00000534405 TECPR2O15040 1411 aa23.55■■□□□ 1.36
SMPD1-210ENST00000534405 FAM83GA6ND36 823 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 ZBTB7BO15156 539 aaPredicted RBP23.54■■□□□ 1.36
SMPD1-210ENST00000534405 GNAI1P63096 354 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 LNPKQ9C0E8 428 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 KNDC1Q76NI1 1749 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 RBM25P49756 843 aaKnown RBP23.54■■□□□ 1.36
SMPD1-210ENST00000534405 ZNF710Q8N1W2 664 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 PTCH1Q13635 1447 aa23.54■■□□□ 1.36
SMPD1-210ENST00000534405 HSP90AB1P08238 724 aaKnown RBP23.53■■□□□ 1.36
SMPD1-210ENST00000534405 C3P01024 1663 aa23.53■■□□□ 1.36
SMPD1-210ENST00000534405 C1orf115Q9H7X2 142 aa23.53■■□□□ 1.36
SMPD1-210ENST00000534405 DDX49Q9Y6V7 483 aaKnown RBP23.53■■□□□ 1.36
SMPD1-210ENST00000534405 CCDC39Q9UFE4 941 aa23.52■■□□□ 1.36
SMPD1-210ENST00000534405 AKAP12Q02952 1782 aa23.52■■□□□ 1.36
SMPD1-210ENST00000534405 PIK3R4Q99570 1358 aa23.52■■□□□ 1.36
SMPD1-210ENST00000534405 GTF2F1P35269 517 aaKnown RBP eCLIP23.52■■□□□ 1.36
SMPD1-210ENST00000534405 C8orf58Q8NAV2 365 aa23.52■■□□□ 1.36
SMPD1-210ENST00000534405 ZNF830Q96NB3 372 aaPredicted RBP23.52■■□□□ 1.36
SMPD1-210ENST00000534405 DCTN1Q14203 1278 aa23.51■■□□□ 1.35
SMPD1-210ENST00000534405 ARHGAP45Q92619 1136 aa23.51■■□□□ 1.35
SMPD1-210ENST00000534405 SIRT1Q96EB6 747 aa23.51■■□□□ 1.35
SMPD1-210ENST00000534405 ROBO2Q9HCK4 1378 aa23.5■■□□□ 1.35
SMPD1-210ENST00000534405 TWISTNBQ3B726 338 aaPredicted RBP23.5■■□□□ 1.35
SMPD1-210ENST00000534405 CHD1LQ86WJ1 897 aa23.5■■□□□ 1.35
SMPD1-210ENST00000534405 RBSNQ9H1K0 784 aa23.5■■□□□ 1.35
SMPD1-210ENST00000534405 ATP2B3Q16720 1220 aa23.5■■□□□ 1.35
SMPD1-210ENST00000534405 CFAP44Q96MT7 982 aa23.5■■□□□ 1.35
SMPD1-210ENST00000534405 ESF1Q9H501 851 aaKnown RBP23.5■■□□□ 1.35
SMPD1-210ENST00000534405 PRIMPOLQ96LW4 560 aa23.49■■□□□ 1.35
SMPD1-210ENST00000534405 ITSN1Q15811 1721 aa23.48■■□□□ 1.35
SMPD1-210ENST00000534405 ABCC4O15439 1325 aa23.48■■□□□ 1.35
SMPD1-210ENST00000534405 AEBP1Q8IUX7 1158 aa23.48■■□□□ 1.35
SMPD1-210ENST00000534405 SIRT2Q8IXJ6 389 aa23.48■■□□□ 1.35
SMPD1-210ENST00000534405 TNRQ92752 1358 aa23.47■■□□□ 1.35
SMPD1-210ENST00000534405 ZSCAN23Q3MJ62 389 aa23.47■■□□□ 1.35
SMPD1-210ENST00000534405 TMEM2Q9UHN6 1383 aa23.47■■□□□ 1.35
SMPD1-210ENST00000534405 ADAMTS13Q76LX8 1427 aa23.45■■□□□ 1.34
SMPD1-210ENST00000534405 BAG4O95429 457 aaKnown RBP23.45■■□□□ 1.34
SMPD1-210ENST00000534405 HMGN5P82970 282 aaKnown RBP23.45■■□□□ 1.34
SMPD1-210ENST00000534405 LMOD3Q0VAK6 560 aa23.45■■□□□ 1.34
SMPD1-210ENST00000534405 EIF4A2Q14240 407 aaKnown RBP23.44■■□□□ 1.34
SMPD1-210ENST00000534405 ANKRD45Q5TZF3 282 aa23.44■■□□□ 1.34
SMPD1-210ENST00000534405 UBR1Q8IWV7 1749 aa23.44■■□□□ 1.34
SMPD1-210ENST00000534405 NUTM2FA1L443 756 aa23.44■■□□□ 1.34
SMPD1-210ENST00000534405 VGLL3A8MV65 326 aa23.44■■□□□ 1.34
SMPD1-210ENST00000534405 SSFA2P28290 1259 aa23.44■■□□□ 1.34
SMPD1-210ENST00000534405 HDGFP51858 240 aaKnown RBP23.44■■□□□ 1.34
SMPD1-210ENST00000534405 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.44■■□□□ 1.34
SMPD1-210ENST00000534405 NRKQ7Z2Y5 1582 aa23.43■■□□□ 1.34
SMPD1-210ENST00000534405 TTC21BQ7Z4L5 1316 aa23.43■■□□□ 1.34
SMPD1-210ENST00000534405 KIF13AQ9H1H9 1805 aa23.43■■□□□ 1.34
SMPD1-210ENST00000534405 KIAA2012Q0VF49 1180 aa23.42■■□□□ 1.34
SMPD1-210ENST00000534405 SULT6B1Q6IMI4 303 aa23.42■■□□□ 1.34
SMPD1-210ENST00000534405 ACEP12821 1306 aa23.41■■□□□ 1.34
SMPD1-210ENST00000534405 GCC1Q96CN9 775 aa23.41■■□□□ 1.34
SMPD1-210ENST00000534405 KRT24Q2M2I5 525 aa23.41■■□□□ 1.34
SMPD1-210ENST00000534405 BMP2KLQ5H9B9 411 aa23.4■■□□□ 1.34
SMPD1-210ENST00000534405 LTKP29376 864 aa23.4■■□□□ 1.34
SMPD1-210ENST00000534405 PRIM1P49642 420 aaKnown RBP23.4■■□□□ 1.34
SMPD1-210ENST00000534405 CAVIN1Q6NZI2 390 aaKnown RBP23.4■■□□□ 1.34
SMPD1-210ENST00000534405 JARID2Q92833 1246 aaPredicted RBP23.39■■□□□ 1.34
SMPD1-210ENST00000534405 OVOS2A0A0J9YW53 1432 aa23.39■■□□□ 1.33
SMPD1-210ENST00000534405 OVOS2Q6IE36 1432 aa23.39■■□□□ 1.33
SMPD1-210ENST00000534405 CGNQ9P2M7 1197 aaKnown RBP23.38■■□□□ 1.33
SMPD1-210ENST00000534405 API5Q9BZZ5 524 aaKnown RBP23.38■■□□□ 1.33
SMPD1-210ENST00000534405 TOPAZ1Q8N9V7 1692 aa23.37■■□□□ 1.33
SMPD1-210ENST00000534405 PEAK1Q9H792 1746 aa23.37■■□□□ 1.33
SMPD1-210ENST00000534405 K7ELQ4 463 aaPredicted RBP23.37■■□□□ 1.33
SMPD1-210ENST00000534405 HSP90AB2PQ58FF8 381 aa23.37■■□□□ 1.33
SMPD1-210ENST00000534405 TSC1Q92574 1164 aa23.37■■□□□ 1.33
SMPD1-210ENST00000534405 MCM10Q7L590 875 aa23.37■■□□□ 1.33
SMPD1-210ENST00000534405 CDK11BP21127 795 aaKnown RBP23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms