RNA–Protein interactions for RNA: ENST00000534091.1

LDLRAD3-206, Transcript of low density lipoprotein receptor class A domain containing 3, humanhuman

TSL 4

Gene LDLRAD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD3-206ENST00000534091 SBF2Q86WG5 1849 aa13.35□□□□□ -0.27
LDLRAD3-206ENST00000534091 PLEKHG2Q9H7P9 1386 aa13.34□□□□□ -0.27
LDLRAD3-206ENST00000534091 NGEFQ8N5V2 710 aa13.34□□□□□ -0.27
LDLRAD3-206ENST00000534091 RRS1Q15050 365 aaKnown RBP13.33□□□□□ -0.28
LDLRAD3-206ENST00000534091 NCBP3Q53F19 620 aaKnown RBP13.33□□□□□ -0.28
LDLRAD3-206ENST00000534091 NUDCQ9Y266 331 aa13.33□□□□□ -0.28
LDLRAD3-206ENST00000534091 PLSCR1O15162 318 aa13.32□□□□□ -0.28
LDLRAD3-206ENST00000534091 TRIM37O94972 964 aa13.32□□□□□ -0.28
LDLRAD3-206ENST00000534091 FAM182BQ5T319 152 aa13.32□□□□□ -0.28
LDLRAD3-206ENST00000534091 DEFB132Q7Z7B7 95 aa13.32□□□□□ -0.28
LDLRAD3-206ENST00000534091 BCL11BQ9C0K0 894 aaPredicted RBP13.32□□□□□ -0.28
LDLRAD3-206ENST00000534091 DIAPH1O60610 1272 aaKnown RBP13.31□□□□□ -0.28
LDLRAD3-206ENST00000534091 MARCH10Q8NA82 808 aaPredicted RBP13.31□□□□□ -0.28
LDLRAD3-206ENST00000534091 NCAPD2Q15021 1401 aa13.3□□□□□ -0.28
LDLRAD3-206ENST00000534091 APBA3O96018 575 aa13.3□□□□□ -0.28
LDLRAD3-206ENST00000534091 CAMKK2Q96RR4 588 aa13.3□□□□□ -0.28
LDLRAD3-206ENST00000534091 EMILIN1Q9Y6C2 1016 aa13.3□□□□□ -0.28
LDLRAD3-206ENST00000534091 RREB1Q92766 1687 aa13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 FBLN1P23142 703 aa13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 HSP90AB2PQ58FF8 381 aa13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 RUNDC1Q96C34 613 aa13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 LTV1Q96GA3 475 aaPredicted RBP13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 RGPD2P0DJD1 1756 aa13.29□□□□□ -0.28
LDLRAD3-206ENST00000534091 IL13P35225 146 aa13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 EN1Q05925 392 aaPredicted RBP13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 RAPGEF4Q8WZA2 1011 aa13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 PNNQ9H307 717 aaKnown RBP13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 ZNF521Q96K83 1311 aa13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 NHSQ6T4R5 1651 aa13.28□□□□□ -0.28
LDLRAD3-206ENST00000534091 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 TATP17735 454 aaPredicted RBP13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 NBPF6Q5VWK0 638 aa13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 ZCRB1Q8TBF4 217 aaKnown RBP13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 NBPF4Q96M43 638 aa13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.29
LDLRAD3-206ENST00000534091 HMGB2P26583 209 aaKnown RBP13.26□□□□□ -0.29
LDLRAD3-206ENST00000534091 DLG5Q8TDM6 1919 aa13.26□□□□□ -0.29
LDLRAD3-206ENST00000534091 FCHSD2O94868 740 aa13.25□□□□□ -0.29
LDLRAD3-206ENST00000534091 EZH2Q15910 746 aaKnown RBP13.25□□□□□ -0.29
LDLRAD3-206ENST00000534091 NBPF14Q5TI25 921 aa13.25□□□□□ -0.29
LDLRAD3-206ENST00000534091 PLEKHF1Q96S99 279 aa13.25□□□□□ -0.29
LDLRAD3-206ENST00000534091 MEGF6O75095 1541 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 PCDH11XQ9BZA7 1347 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 PCDH11YQ9BZA8 1340 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 APAF1O14727 1248 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 U2SURPO15042 1029 aaKnown RBP13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 PPM1GO15355 546 aaPredicted RBP13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 CCDC27Q2M243 656 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 CCDC146Q8IYE0 955 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 NUP188Q5SRE5 1749 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 SHANK3Q9BYB0 1731 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 KAT6BQ8WYB5 2073 aa13.24□□□□□ -0.29
LDLRAD3-206ENST00000534091 PKD1L3Q7Z443 1732 aa13.23□□□□□ -0.29
LDLRAD3-206ENST00000534091 RSPH6AQ9H0K4 717 aa13.23□□□□□ -0.29
LDLRAD3-206ENST00000534091 EIF4A2Q14240 407 aaKnown RBP13.22□□□□□ -0.29
LDLRAD3-206ENST00000534091 EYA1Q99502 592 aa13.22□□□□□ -0.29
LDLRAD3-206ENST00000534091 SPG7Q9UQ90 795 aa13.22□□□□□ -0.29
LDLRAD3-206ENST00000534091 IGSF1Q8N6C5 1336 aa13.21□□□□□ -0.29
LDLRAD3-206ENST00000534091 DDX54Q8TDD1 881 aaKnown RBP13.21□□□□□ -0.29
LDLRAD3-206ENST00000534091 KDRP35968 1356 aa13.2□□□□□ -0.3
LDLRAD3-206ENST00000534091 BTAF1O14981 1849 aa13.2□□□□□ -0.3
LDLRAD3-206ENST00000534091 MAPK8IP3Q9UPT6 1336 aa13.2□□□□□ -0.3
LDLRAD3-206ENST00000534091 LRP5O75197 1615 aa13.2□□□□□ -0.3
LDLRAD3-206ENST00000534091 GOLGA2Q08379 1002 aa13.19□□□□□ -0.3
LDLRAD3-206ENST00000534091 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
LDLRAD3-206ENST00000534091 SLC27A3Q5K4L6 730 aa13.19□□□□□ -0.3
LDLRAD3-206ENST00000534091 USHBP1Q8N6Y0 703 aa13.19□□□□□ -0.3
LDLRAD3-206ENST00000534091 NEFMP07197 916 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 PRKAR2BP31323 418 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 AMOTQ4VCS5 1084 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 WDR63Q8IWG1 891 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 WWC1Q8IX03 1113 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 SALL2Q9Y467 1007 aaPredicted RBP13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 DOT1LQ8TEK3 1739 aa13.18□□□□□ -0.3
LDLRAD3-206ENST00000534091 KCNQ2O43526 872 aa13.17□□□□□ -0.3
LDLRAD3-206ENST00000534091 TMPOP42166 694 aaKnown RBP13.17□□□□□ -0.3
LDLRAD3-206ENST00000534091 TXNRD1Q16881 649 aa13.17□□□□□ -0.3
LDLRAD3-206ENST00000534091 TRMT2AQ8IZ69 625 aaKnown RBP13.17□□□□□ -0.3
LDLRAD3-206ENST00000534091 E9PSI1 815 aa13.16□□□□□ -0.3
LDLRAD3-206ENST00000534091 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
LDLRAD3-206ENST00000534091 SLFN5Q08AF3 891 aa13.16□□□□□ -0.3
LDLRAD3-206ENST00000534091 IFNL2Q8IZJ0 200 aa13.16□□□□□ -0.3
LDLRAD3-206ENST00000534091 ACSBG1Q96GR2 724 aa13.16□□□□□ -0.3
LDLRAD3-206ENST00000534091 SENP3-EIF4A1A0A087X0R7 540 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 CYP27B1O15528 508 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 HMOX1P09601 288 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 PRIM1P49642 420 aaKnown RBP13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 R3HDM1Q15032 1099 aaKnown RBP13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 PLEKHO1Q53GL0 409 aaPredicted RBP13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 DUSP27Q5VZP5 1158 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 PTF1AQ7RTS3 328 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 PROM2Q8N271 834 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 CDCA7LQ96GN5 454 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 LY75O60449 1722 aa13.15□□□□□ -0.3
LDLRAD3-206ENST00000534091 IL16Q14005 1332 aa13.14□□□□□ -0.31
LDLRAD3-206ENST00000534091 RNF123Q5XPI4 1314 aa13.14□□□□□ -0.31
LDLRAD3-206ENST00000534091 NFE2L2Q16236 605 aa13.14□□□□□ -0.31
LDLRAD3-206ENST00000534091 SULT6B1Q6IMI4 303 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms