RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 NSD2O96028 1365 aa22.15■■□□□ 1.14
CHMP4A-207ENST00000533523 GPR162Q16538 588 aa22.15■■□□□ 1.14
CHMP4A-207ENST00000533523 IP6K1Q92551 441 aa22.15■■□□□ 1.14
CHMP4A-207ENST00000533523 DDX54Q8TDD1 881 aaKnown RBP22.14■■□□□ 1.13
CHMP4A-207ENST00000533523 KIF20BQ96Q89 1820 aa22.14■■□□□ 1.13
CHMP4A-207ENST00000533523 COG3Q96JB2 828 aa22.13■■□□□ 1.13
CHMP4A-207ENST00000533523 PUS7Q96PZ0 661 aaKnown RBP22.12■■□□□ 1.13
CHMP4A-207ENST00000533523 MAP3K19Q56UN5 1328 aa22.11■■□□□ 1.13
CHMP4A-207ENST00000533523 AMPHP49418 695 aa22.1■■□□□ 1.13
CHMP4A-207ENST00000533523 SYTL4Q96C24 671 aaPredicted RBP22.1■■□□□ 1.13
CHMP4A-207ENST00000533523 TESK2Q96S53 571 aa22.1■■□□□ 1.13
CHMP4A-207ENST00000533523 MEGF6O75095 1541 aa22.1■■□□□ 1.13
CHMP4A-207ENST00000533523 ATP10DQ9P241 1426 aa22.09■■□□□ 1.13
CHMP4A-207ENST00000533523 ST20-MTHFSA0A0A6YYL1 179 aa22.09■■□□□ 1.13
CHMP4A-207ENST00000533523 HOXC9P31274 260 aa22.09■■□□□ 1.13
CHMP4A-207ENST00000533523 KLHL34Q8N239 644 aa22.09■■□□□ 1.13
CHMP4A-207ENST00000533523 TOGARAM1Q9Y4F4 1720 aa22.09■■□□□ 1.13
CHMP4A-207ENST00000533523 SLC27A3Q5K4L6 730 aa22.08■■□□□ 1.13
CHMP4A-207ENST00000533523 RTL1A6NKG5 1358 aa22.08■■□□□ 1.12
CHMP4A-207ENST00000533523 ANKRD36BQ8N2N9 1353 aa22.08■■□□□ 1.12
CHMP4A-207ENST00000533523 PELP1Q8IZL8 1130 aaKnown RBP22.07■■□□□ 1.12
CHMP4A-207ENST00000533523 ADCY9O60503 1353 aa22.07■■□□□ 1.12
CHMP4A-207ENST00000533523 TAF1LQ8IZX4 1826 aa22.06■■□□□ 1.12
CHMP4A-207ENST00000533523 FBLN1P23142 703 aa22.06■■□□□ 1.12
CHMP4A-207ENST00000533523 CCER1Q8TC90 406 aaPredicted RBP22.06■■□□□ 1.12
CHMP4A-207ENST00000533523 C5P01031 1676 aa22.05■■□□□ 1.12
CHMP4A-207ENST00000533523 PRIM1P49642 420 aaKnown RBP22.05■■□□□ 1.12
CHMP4A-207ENST00000533523 SMG6Q86US8 1419 aaKnown RBP22.05■■□□□ 1.12
CHMP4A-207ENST00000533523 RRS1Q15050 365 aaKnown RBP22.03■■□□□ 1.12
CHMP4A-207ENST00000533523 ZCRB1Q8TBF4 217 aaKnown RBP22.03■■□□□ 1.12
CHMP4A-207ENST00000533523 SLC16A10Q8TF71 515 aa22.03■■□□□ 1.12
CHMP4A-207ENST00000533523 TFCP2L1Q9NZI6 479 aa22.03■■□□□ 1.12
CHMP4A-207ENST00000533523 PCNTO95613 3336 aa22.03■■□□□ 1.12
CHMP4A-207ENST00000533523 POLD1P28340 1107 aa22.02■■□□□ 1.12
CHMP4A-207ENST00000533523 USHBP1Q8N6Y0 703 aa22.01■■□□□ 1.11
CHMP4A-207ENST00000533523 CLSPNQ9HAW4 1339 aa22.01■■□□□ 1.11
CHMP4A-207ENST00000533523 USP47Q96K76 1375 aa22■■□□□ 1.11
CHMP4A-207ENST00000533523 SLC24A1O60721 1099 aa22■■□□□ 1.11
CHMP4A-207ENST00000533523 GGNBP2Q9H3C7 697 aa22■■□□□ 1.11
CHMP4A-207ENST00000533523 ITGB4P16144 1822 aa21.99■■□□□ 1.11
CHMP4A-207ENST00000533523 COL23A1Q86Y22 540 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-207ENST00000533523 CCNL1Q9UK58 526 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-207ENST00000533523 TMF1P82094 1093 aa21.97■■□□□ 1.11
CHMP4A-207ENST00000533523 NBPF6Q5VWK0 638 aa21.97■■□□□ 1.11
CHMP4A-207ENST00000533523 MSL1Q68DK7 614 aa21.97■■□□□ 1.11
CHMP4A-207ENST00000533523 RAPGEF4Q8WZA2 1011 aa21.97■■□□□ 1.11
CHMP4A-207ENST00000533523 NBPF4Q96M43 638 aa21.97■■□□□ 1.11
CHMP4A-207ENST00000533523 MSH5O43196 834 aa21.96■■□□□ 1.11
CHMP4A-207ENST00000533523 AMIGO3Q86WK7 504 aa21.96■■□□□ 1.11
CHMP4A-207ENST00000533523 PKD1L3Q7Z443 1732 aa21.96■■□□□ 1.11
CHMP4A-207ENST00000533523 KIAA1551Q9HCM1 1747 aa21.96■■□□□ 1.11
CHMP4A-207ENST00000533523 UBR3Q6ZT12 1888 aa21.95■■□□□ 1.1
CHMP4A-207ENST00000533523 FYB1O15117 783 aa21.95■■□□□ 1.1
CHMP4A-207ENST00000533523 CGNL1Q0VF96 1302 aa21.95■■□□□ 1.1
CHMP4A-207ENST00000533523 FLT4P35916 1363 aa21.94■■□□□ 1.1
CHMP4A-207ENST00000533523 ANKRD26Q9UPS8 1709 aa21.94■■□□□ 1.1
CHMP4A-207ENST00000533523 TATP17735 454 aaPredicted RBP21.93■■□□□ 1.1
CHMP4A-207ENST00000533523 PCDH11XQ9BZA7 1347 aa21.93■■□□□ 1.1
CHMP4A-207ENST00000533523 PCDH11YQ9BZA8 1340 aa21.93■■□□□ 1.1
CHMP4A-207ENST00000533523 INSRP06213 1382 aa21.92■■□□□ 1.1
CHMP4A-207ENST00000533523 TIMELESSQ9UNS1 1208 aa21.92■■□□□ 1.1
CHMP4A-207ENST00000533523 HSPA6P17066 643 aa21.91■■□□□ 1.1
CHMP4A-207ENST00000533523 MAP2P11137 1827 aaKnown RBP21.91■■□□□ 1.1
CHMP4A-207ENST00000533523 CICQ96RK0 1608 aaPredicted RBP21.91■■□□□ 1.1
CHMP4A-207ENST00000533523 C4BP0C0L5 1744 aa21.9■■□□□ 1.1
CHMP4A-207ENST00000533523 HSP90AB2PQ58FF8 381 aa21.9■■□□□ 1.1
CHMP4A-207ENST00000533523 NSD3Q9BZ95 1437 aa21.89■■□□□ 1.1
CHMP4A-207ENST00000533523 PALLDQ8WX93 1383 aa21.89■■□□□ 1.1
CHMP4A-207ENST00000533523 ZNF526Q8TF50 670 aaPredicted RBP21.89■■□□□ 1.09
CHMP4A-207ENST00000533523 GRIN3BO60391 1043 aa21.88■■□□□ 1.09
CHMP4A-207ENST00000533523 CDCA8Q53HL2 280 aa21.88■■□□□ 1.09
CHMP4A-207ENST00000533523 SMIM5Q71RC9 77 aa21.88■■□□□ 1.09
CHMP4A-207ENST00000533523 KIF24Q5T7B8 1368 aa21.87■■□□□ 1.09
CHMP4A-207ENST00000533523 KIF3CO14782 793 aa21.86■■□□□ 1.09
CHMP4A-207ENST00000533523 WWC3Q9ULE0 1092 aa21.86■■□□□ 1.09
CHMP4A-207ENST00000533523 MPRIPQ6WCQ1 1025 aa21.85■■□□□ 1.09
CHMP4A-207ENST00000533523 EMILIN1Q9Y6C2 1016 aa21.85■■□□□ 1.09
CHMP4A-207ENST00000533523 GPBP1L1Q9HC44 474 aaPredicted RBP21.84■■□□□ 1.09
CHMP4A-207ENST00000533523 KIF13BQ9NQT8 1826 aa21.84■■□□□ 1.09
CHMP4A-207ENST00000533523 CYP27B1O15528 508 aa21.83■■□□□ 1.09
CHMP4A-207ENST00000533523 PPM1GO15355 546 aaPredicted RBP21.82■■□□□ 1.08
CHMP4A-207ENST00000533523 N4BP2Q86UW6 1770 aaPredicted RBP21.82■■□□□ 1.08
CHMP4A-207ENST00000533523 NCAPD2Q15021 1401 aa21.81■■□□□ 1.08
CHMP4A-207ENST00000533523 AK7Q96M32 723 aa21.81■■□□□ 1.08
CHMP4A-207ENST00000533523 CD2APQ9Y5K6 639 aa21.81■■□□□ 1.08
CHMP4A-207ENST00000533523 CARD14Q9BXL6 1004 aa21.8■■□□□ 1.08
CHMP4A-207ENST00000533523 WDR90Q96KV7 1748 aa21.8■■□□□ 1.08
CHMP4A-207ENST00000533523 BRCA1P38398 1863 aaKnown RBP21.79■■□□□ 1.08
CHMP4A-207ENST00000533523 FLAD1Q8NFF5 587 aa21.79■■□□□ 1.08
CHMP4A-207ENST00000533523 SMARCC1Q92922 1105 aaPredicted RBP21.79■■□□□ 1.08
CHMP4A-207ENST00000533523 IGSF1Q8N6C5 1336 aa21.79■■□□□ 1.08
CHMP4A-207ENST00000533523 PHF14O94880 888 aa21.78■■□□□ 1.08
CHMP4A-207ENST00000533523 HMGB2P26583 209 aaKnown RBP21.78■■□□□ 1.08
CHMP4A-207ENST00000533523 DNAJC5GQ8N7S2 189 aa21.78■■□□□ 1.08
CHMP4A-207ENST00000533523 SPG7Q9UQ90 795 aa21.76■■□□□ 1.07
CHMP4A-207ENST00000533523 PIGBQ92521 554 aa21.75■■□□□ 1.07
CHMP4A-207ENST00000533523 PXDNLA1KZ92 1463 aa21.74■■□□□ 1.07
CHMP4A-207ENST00000533523 ZEB1P37275 1124 aaPredicted RBP21.73■■□□□ 1.07
CHMP4A-207ENST00000533523 EYA1Q99502 592 aa21.72■■□□□ 1.07
CHMP4A-207ENST00000533523 POLR3GLQ9BT43 218 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms