RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 APBA3O96018 575 aa26.85■■□□□ 1.89
CPSF1-209ENST00000532725 PPP2R1AP30153 589 aa26.85■■□□□ 1.89
CPSF1-209ENST00000532725 EN1Q05925 392 aaPredicted RBP26.85■■□□□ 1.89
CPSF1-209ENST00000532725 RGPD1P0DJD0 1748 aa26.83■■□□□ 1.89
CPSF1-209ENST00000532725 DIAPH1O60610 1272 aaKnown RBP26.83■■□□□ 1.89
CPSF1-209ENST00000532725 KCNQ2O43526 872 aa26.82■■□□□ 1.88
CPSF1-209ENST00000532725 CAMKK2Q96RR4 588 aa26.82■■□□□ 1.88
CPSF1-209ENST00000532725 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.82■■□□□ 1.88
CPSF1-209ENST00000532725 SBF2Q86WG5 1849 aa26.81■■□□□ 1.88
CPSF1-209ENST00000532725 CYP27B1O15528 508 aa26.8■■□□□ 1.88
CPSF1-209ENST00000532725 SULT6B1Q6IMI4 303 aa26.8■■□□□ 1.88
CPSF1-209ENST00000532725 AEBP1Q8IUX7 1158 aa26.8■■□□□ 1.88
CPSF1-209ENST00000532725 ACSBG1Q96GR2 724 aa26.8■■□□□ 1.88
CPSF1-209ENST00000532725 TNS1Q9HBL0 1735 aaKnown RBP26.79■■□□□ 1.88
CPSF1-209ENST00000532725 ZNF316A6NFI3 1004 aaPredicted RBP26.79■■□□□ 1.88
CPSF1-209ENST00000532725 SPG7Q9UQ90 795 aa26.79■■□□□ 1.88
CPSF1-209ENST00000532725 PARD3Q8TEW0 1356 aa26.79■■□□□ 1.88
CPSF1-209ENST00000532725 EZH2Q15910 746 aaKnown RBP26.78■■□□□ 1.88
CPSF1-209ENST00000532725 PCDH11XQ9BZA7 1347 aa26.78■■□□□ 1.88
CPSF1-209ENST00000532725 PCDH11YQ9BZA8 1340 aa26.78■■□□□ 1.88
CPSF1-209ENST00000532725 PLSCR1O15162 318 aa26.77■■□□□ 1.88
CPSF1-209ENST00000532725 SHANK3Q9BYB0 1731 aa26.76■■□□□ 1.88
CPSF1-209ENST00000532725 COL3A1P02461 1466 aaPredicted RBP26.76■■□□□ 1.87
CPSF1-209ENST00000532725 KDRP35968 1356 aa26.76■■□□□ 1.87
CPSF1-209ENST00000532725 PLEKHG2Q9H7P9 1386 aa26.75■■□□□ 1.87
CPSF1-209ENST00000532725 PRIM1P49642 420 aaKnown RBP26.74■■□□□ 1.87
CPSF1-209ENST00000532725 NKX1-1Q15270 411 aaPredicted RBP26.74■■□□□ 1.87
CPSF1-209ENST00000532725 RALBP1Q15311 655 aa26.74■■□□□ 1.87
CPSF1-209ENST00000532725 CFAP53Q96M91 514 aa26.74■■□□□ 1.87
CPSF1-209ENST00000532725 PLEKHO1Q53GL0 409 aaPredicted RBP26.73■■□□□ 1.87
CPSF1-209ENST00000532725 KAT6BQ8WYB5 2073 aa26.72■■□□□ 1.87
CPSF1-209ENST00000532725 HMOX1P09601 288 aa26.72■■□□□ 1.87
CPSF1-209ENST00000532725 PKD1L3Q7Z443 1732 aa26.71■■□□□ 1.87
CPSF1-209ENST00000532725 AMOTQ4VCS5 1084 aa26.71■■□□□ 1.87
CPSF1-209ENST00000532725 IFNL2Q8IZJ0 200 aa26.71■■□□□ 1.87
CPSF1-209ENST00000532725 PHKG2P15735 406 aa26.7■■□□□ 1.86
CPSF1-209ENST00000532725 PROM2Q8N271 834 aa26.7■■□□□ 1.86
CPSF1-209ENST00000532725 U2SURPO15042 1029 aaKnown RBP26.69■■□□□ 1.86
CPSF1-209ENST00000532725 SYTL4Q96C24 671 aaPredicted RBP26.68■■□□□ 1.86
CPSF1-209ENST00000532725 NHSQ6T4R5 1651 aa26.68■■□□□ 1.86
CPSF1-209ENST00000532725 NUDCQ9Y266 331 aa26.66■■□□□ 1.86
CPSF1-209ENST00000532725 ZNF530Q6P9A1 599 aaPredicted RBP26.64■■□□□ 1.86
CPSF1-209ENST00000532725 TXNRD1Q16881 649 aa26.63■■□□□ 1.85
CPSF1-209ENST00000532725 PRKRIP1Q9H875 184 aaPredicted RBP26.62■■□□□ 1.85
CPSF1-209ENST00000532725 HSP90AB1P08238 724 aaKnown RBP26.6■■□□□ 1.85
CPSF1-209ENST00000532725 MPRIPQ6WCQ1 1025 aa26.6■■□□□ 1.85
CPSF1-209ENST00000532725 DCAF5Q96JK2 942 aa26.6■■□□□ 1.85
CPSF1-209ENST00000532725 DOT1LQ8TEK3 1739 aa26.59■■□□□ 1.85
CPSF1-209ENST00000532725 U2AF1L5P0DN76 240 aaPredicted RBP26.59■■□□□ 1.85
CPSF1-209ENST00000532725 U2AF1Q01081 240 aaKnown RBP eCLIP26.59■■□□□ 1.85
CPSF1-209ENST00000532725 MTHFSDQ2M296 383 aaKnown RBP26.59■■□□□ 1.85
CPSF1-209ENST00000532725 RSPH6AQ9H0K4 717 aa26.59■■□□□ 1.85
CPSF1-209ENST00000532725 BTAF1O14981 1849 aa26.59■■□□□ 1.85
CPSF1-209ENST00000532725 MYBBP1AQ9BQG0 1328 aaKnown RBP26.59■■□□□ 1.85
CPSF1-209ENST00000532725 C1orf141Q5JVX7 400 aa26.58■■□□□ 1.85
CPSF1-209ENST00000532725 PIGBQ92521 554 aa26.58■■□□□ 1.85
CPSF1-209ENST00000532725 RGPD3A6NKT7 1758 aaPredicted RBP26.58■■□□□ 1.85
CPSF1-209ENST00000532725 RGPD4Q7Z3J3 1758 aa26.58■■□□□ 1.85
CPSF1-209ENST00000532725 FCHSD2O94868 740 aa26.57■■□□□ 1.84
CPSF1-209ENST00000532725 AKAP4Q5JQC9 854 aa26.57■■□□□ 1.84
CPSF1-209ENST00000532725 RREB1Q92766 1687 aa26.57■■□□□ 1.84
CPSF1-209ENST00000532725 ERVV-2B6SEH9 535 aa26.56■■□□□ 1.84
CPSF1-209ENST00000532725 PRKAR2BP31323 418 aa26.55■■□□□ 1.84
CPSF1-209ENST00000532725 NBPF14Q5TI25 921 aa26.55■■□□□ 1.84
CPSF1-209ENST00000532725 PHACTR3Q96KR7 559 aa26.55■■□□□ 1.84
CPSF1-209ENST00000532725 TOGARAM1Q9Y4F4 1720 aa26.54■■□□□ 1.84
CPSF1-209ENST00000532725 LRRC4BQ9NT99 713 aa26.54■■□□□ 1.84
CPSF1-209ENST00000532725 TMOD3Q9NYL9 352 aa26.53■■□□□ 1.84
CPSF1-209ENST00000532725 KDM6AO15550 1401 aaPredicted RBP26.53■■□□□ 1.84
CPSF1-209ENST00000532725 PSDA5PKW4 1024 aaPredicted RBP26.52■■□□□ 1.84
CPSF1-209ENST00000532725 R3HDM1Q15032 1099 aaKnown RBP26.52■■□□□ 1.84
CPSF1-209ENST00000532725 SLC27A3Q5K4L6 730 aa26.52■■□□□ 1.84
CPSF1-209ENST00000532725 NUP188Q5SRE5 1749 aa26.51■■□□□ 1.83
CPSF1-209ENST00000532725 LGR6Q9HBX8 967 aa26.51■■□□□ 1.83
CPSF1-209ENST00000532725 ITGB4P16144 1822 aa26.51■■□□□ 1.83
CPSF1-209ENST00000532725 CABP4P57796 275 aa26.49■■□□□ 1.83
CPSF1-209ENST00000532725 GAS2L2Q8NHY3 880 aa26.49■■□□□ 1.83
CPSF1-209ENST00000532725 SMARCC1Q92922 1105 aaPredicted RBP26.49■■□□□ 1.83
CPSF1-209ENST00000532725 ANO8Q9HCE9 1232 aaPredicted RBP26.49■■□□□ 1.83
CPSF1-209ENST00000532725 RNMTO43148 476 aaKnown RBP26.48■■□□□ 1.83
CPSF1-209ENST00000532725 KCNQ4P56696 695 aa26.48■■□□□ 1.83
CPSF1-209ENST00000532725 ASAP1Q9ULH1 1129 aa26.48■■□□□ 1.83
CPSF1-209ENST00000532725 NFATC2IPQ8NCF5 419 aa26.47■■□□□ 1.83
CPSF1-209ENST00000532725 ATG3Q9NT62 314 aa26.47■■□□□ 1.83
CPSF1-209ENST00000532725 PLEKHF1Q96S99 279 aa26.46■■□□□ 1.83
CPSF1-209ENST00000532725 CCNL1Q9UK58 526 aaPredicted RBP26.46■■□□□ 1.83
CPSF1-209ENST00000532725 PALLDQ8WX93 1383 aa26.46■■□□□ 1.83
CPSF1-209ENST00000532725 GNAT3A8MTJ3 354 aa26.44■■□□□ 1.82
CPSF1-209ENST00000532725 SLC15A2Q16348 729 aa26.44■■□□□ 1.82
CPSF1-209ENST00000532725 LY75O60449 1722 aa26.43■■□□□ 1.82
CPSF1-209ENST00000532725 IL17REQ8NFR9 667 aa26.43■■□□□ 1.82
CPSF1-209ENST00000532725 SLC52A2Q9HAB3 445 aa26.43■■□□□ 1.82
CPSF1-209ENST00000532725 STK32BQ9NY57 414 aa26.43■■□□□ 1.82
CPSF1-209ENST00000532725 AKT1S1Q96B36 256 aa26.41■■□□□ 1.82
CPSF1-209ENST00000532725 PNNQ9H307 717 aaKnown RBP26.41■■□□□ 1.82
CPSF1-209ENST00000532725 MAP3K5Q99683 1374 aa26.41■■□□□ 1.82
CPSF1-209ENST00000532725 LOC102724428A0A0B4J2F2 783 aa26.4■■□□□ 1.82
CPSF1-209ENST00000532725 SIK1P57059 783 aa26.4■■□□□ 1.82
CPSF1-209ENST00000532725 SCN11AQ9UI33 1791 aa26.39■■□□□ 1.82
CPSF1-209ENST00000532725 ZNF827Q17R98 1081 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms