RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 NFAT5O94916 1531 aa12.86□□□□□ -0.35
VPS11-203ENST00000529545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS11-203ENST00000529545 SLC16A10Q8TF71 515 aa12.85□□□□□ -0.35
VPS11-203ENST00000529545 ERBB3P21860 1342 aa12.85□□□□□ -0.35
VPS11-203ENST00000529545 BTAF1O14981 1849 aa12.84□□□□□ -0.35
VPS11-203ENST00000529545 L3MBTL2Q969R5 705 aa12.84□□□□□ -0.35
VPS11-203ENST00000529545 ROCK2O75116 1388 aaKnown RBP12.83□□□□□ -0.36
VPS11-203ENST00000529545 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
VPS11-203ENST00000529545 PAPPAQ13219 1627 aa12.83□□□□□ -0.36
VPS11-203ENST00000529545 GIGYF1O75420 1035 aaPredicted RBP12.82□□□□□ -0.36
VPS11-203ENST00000529545 ZNF827Q17R98 1081 aa12.82□□□□□ -0.36
VPS11-203ENST00000529545 SLC27A3Q5K4L6 730 aa12.82□□□□□ -0.36
VPS11-203ENST00000529545 ANKRD24Q8TF21 1146 aa12.82□□□□□ -0.36
VPS11-203ENST00000529545 USP31Q70CQ4 1352 aa12.81□□□□□ -0.36
VPS11-203ENST00000529545 LTN1O94822 1766 aa12.81□□□□□ -0.36
VPS11-203ENST00000529545 HDGFL2Q7Z4V5 671 aaPredicted RBP12.81□□□□□ -0.36
VPS11-203ENST00000529545 LRRC4BQ9NT99 713 aa12.81□□□□□ -0.36
VPS11-203ENST00000529545 MON2Q7Z3U7 1717 aa12.81□□□□□ -0.36
VPS11-203ENST00000529545 NME9Q86XW9 330 aa12.8□□□□□ -0.36
VPS11-203ENST00000529545 DDX54Q8TDD1 881 aaKnown RBP12.8□□□□□ -0.36
VPS11-203ENST00000529545 TMC1Q8TDI8 760 aa12.8□□□□□ -0.36
VPS11-203ENST00000529545 TFCP2L1Q9NZI6 479 aa12.8□□□□□ -0.36
VPS11-203ENST00000529545 PRR29P0C7W0 189 aa12.79□□□□□ -0.36
VPS11-203ENST00000529545 SYTL4Q96C24 671 aaPredicted RBP12.79□□□□□ -0.36
VPS11-203ENST00000529545 QSER1Q2KHR3 1735 aa12.79□□□□□ -0.36
VPS11-203ENST00000529545 USP54Q70EL1 1684 aa12.78□□□□□ -0.36
VPS11-203ENST00000529545 GRIN3BO60391 1043 aa12.77□□□□□ -0.37
VPS11-203ENST00000529545 TERF2IPQ9NYB0 399 aa12.77□□□□□ -0.37
VPS11-203ENST00000529545 NEUROD1Q13562 356 aa12.76□□□□□ -0.37
VPS11-203ENST00000529545 IP6K1Q92551 441 aa12.76□□□□□ -0.37
VPS11-203ENST00000529545 LTV1Q96GA3 475 aaPredicted RBP12.76□□□□□ -0.37
VPS11-203ENST00000529545 PNPLA7Q6ZV29 1317 aa12.76□□□□□ -0.37
VPS11-203ENST00000529545 SBNO2Q9Y2G9 1366 aa12.76□□□□□ -0.37
VPS11-203ENST00000529545 FAM208AQ9UK61 1670 aaKnown RBP12.76□□□□□ -0.37
VPS11-203ENST00000529545 PRKAR2AP13861 404 aaKnown RBP12.75□□□□□ -0.37
VPS11-203ENST00000529545 HMGB2P26583 209 aaKnown RBP12.75□□□□□ -0.37
VPS11-203ENST00000529545 PRIM1P49642 420 aaKnown RBP12.75□□□□□ -0.37
VPS11-203ENST00000529545 EDC4Q6P2E9 1401 aaKnown RBP12.75□□□□□ -0.37
VPS11-203ENST00000529545 SIN3AQ96ST3 1273 aa12.75□□□□□ -0.37
VPS11-203ENST00000529545 COL24A1Q17RW2 1714 aa12.74□□□□□ -0.37
VPS11-203ENST00000529545 ANKRD36BQ8N2N9 1353 aa12.74□□□□□ -0.37
VPS11-203ENST00000529545 IFFO2Q5TF58 517 aa12.74□□□□□ -0.37
VPS11-203ENST00000529545 NLGN2Q8NFZ4 835 aa12.74□□□□□ -0.37
VPS11-203ENST00000529545 SLC12A5Q9H2X9 1139 aa12.74□□□□□ -0.37
VPS11-203ENST00000529545 KCNQ4P56696 695 aa12.73□□□□□ -0.37
VPS11-203ENST00000529545 ZCRB1Q8TBF4 217 aaKnown RBP12.73□□□□□ -0.37
VPS11-203ENST00000529545 CARD11Q9BXL7 1154 aa12.73□□□□□ -0.37
VPS11-203ENST00000529545 CCNL1Q9UK58 526 aaPredicted RBP12.73□□□□□ -0.37
VPS11-203ENST00000529545 CD163L1Q9NR16 1453 aa12.72□□□□□ -0.37
VPS11-203ENST00000529545 LY75O60449 1722 aa12.72□□□□□ -0.37
VPS11-203ENST00000529545 AMPHP49418 695 aa12.72□□□□□ -0.37
VPS11-203ENST00000529545 TUBGCP6Q96RT7 1819 aa12.72□□□□□ -0.37
VPS11-203ENST00000529545 DOT1LQ8TEK3 1739 aa12.71□□□□□ -0.37
VPS11-203ENST00000529545 USP47Q96K76 1375 aa12.71□□□□□ -0.37
VPS11-203ENST00000529545 COG3Q96JB2 828 aa12.71□□□□□ -0.37
VPS11-203ENST00000529545 UTRNP46939 3433 aa12.71□□□□□ -0.37
VPS11-203ENST00000529545 SHANK3Q9BYB0 1731 aa12.71□□□□□ -0.38
VPS11-203ENST00000529545 A0A1W2PP64 1363 aa12.7□□□□□ -0.38
VPS11-203ENST00000529545 YBX3P16989 372 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS11-203ENST00000529545 PUS7Q96PZ0 661 aaKnown RBP12.7□□□□□ -0.38
VPS11-203ENST00000529545 COL23A1Q86Y22 540 aaPredicted RBP12.69□□□□□ -0.38
VPS11-203ENST00000529545 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
VPS11-203ENST00000529545 GPBP1L1Q9HC44 474 aaPredicted RBP12.69□□□□□ -0.38
VPS11-203ENST00000529545 CGNL1Q0VF96 1302 aa12.68□□□□□ -0.38
VPS11-203ENST00000529545 HOXC9P31274 260 aa12.68□□□□□ -0.38
VPS11-203ENST00000529545 MSL1Q68DK7 614 aa12.68□□□□□ -0.38
VPS11-203ENST00000529545 CD2APQ9Y5K6 639 aa12.68□□□□□ -0.38
VPS11-203ENST00000529545 MAP3K19Q56UN5 1328 aa12.67□□□□□ -0.38
VPS11-203ENST00000529545 RAPGEF4Q8WZA2 1011 aa12.67□□□□□ -0.38
VPS11-203ENST00000529545 ATP10DQ9P241 1426 aa12.67□□□□□ -0.38
VPS11-203ENST00000529545 NSD2O96028 1365 aa12.67□□□□□ -0.38
VPS11-203ENST00000529545 SLC24A1O60721 1099 aa12.66□□□□□ -0.38
VPS11-203ENST00000529545 RGPD2P0DJD1 1756 aa12.66□□□□□ -0.38
VPS11-203ENST00000529545 SMG6Q86US8 1419 aaKnown RBP12.65□□□□□ -0.38
VPS11-203ENST00000529545 TATP17735 454 aaPredicted RBP12.65□□□□□ -0.38
VPS11-203ENST00000529545 MEGF6O75095 1541 aa12.65□□□□□ -0.38
VPS11-203ENST00000529545 C5P01031 1676 aa12.64□□□□□ -0.39
VPS11-203ENST00000529545 NBPF6Q5VWK0 638 aa12.64□□□□□ -0.39
VPS11-203ENST00000529545 NBPF4Q96M43 638 aa12.64□□□□□ -0.39
VPS11-203ENST00000529545 RTL1A6NKG5 1358 aa12.64□□□□□ -0.39
VPS11-203ENST00000529545 HAX1O00165 279 aa12.63□□□□□ -0.39
VPS11-203ENST00000529545 FBLN1P23142 703 aa12.63□□□□□ -0.39
VPS11-203ENST00000529545 ZNF526Q8TF50 670 aaPredicted RBP12.63□□□□□ -0.39
VPS11-203ENST00000529545 SMARCC1Q92922 1105 aaPredicted RBP12.63□□□□□ -0.39
VPS11-203ENST00000529545 AK7Q96M32 723 aa12.63□□□□□ -0.39
VPS11-203ENST00000529545 PCDH11XQ9BZA7 1347 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 PCDH11YQ9BZA8 1340 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 PALLDQ8WX93 1383 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 HSPA6P17066 643 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 RRS1Q15050 365 aaKnown RBP12.62□□□□□ -0.39
VPS11-203ENST00000529545 MPRIPQ6WCQ1 1025 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 USHBP1Q8N6Y0 703 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 NSD3Q9BZ95 1437 aa12.62□□□□□ -0.39
VPS11-203ENST00000529545 TAF1LQ8IZX4 1826 aa12.6□□□□□ -0.39
VPS11-203ENST00000529545 TONSLQ96HA7 1378 aa12.6□□□□□ -0.39
VPS11-203ENST00000529545 IGSF1Q8N6C5 1336 aa12.6□□□□□ -0.39
VPS11-203ENST00000529545 CHADLQ6NUI6 762 aa12.59□□□□□ -0.39
VPS11-203ENST00000529545 C4BP0C0L5 1744 aa12.59□□□□□ -0.39
VPS11-203ENST00000529545 ADCY9O60503 1353 aa12.58□□□□□ -0.4
VPS11-203ENST00000529545 GOLGB1Q14789 3259 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms