RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 TATP17735 454 aaPredicted RBP22.89■■□□□ 1.25
HIF3A-211ENST00000528563 MTHFSP49914 203 aa22.88■■□□□ 1.25
HIF3A-211ENST00000528563 EZH2Q15910 746 aaKnown RBP22.87■■□□□ 1.25
HIF3A-211ENST00000528563 KCNQ2O43526 872 aa22.86■■□□□ 1.25
HIF3A-211ENST00000528563 PLSCR1O15162 318 aa22.85■■□□□ 1.25
HIF3A-211ENST00000528563 CNGB1Q14028 1251 aaPredicted RBP22.85■■□□□ 1.25
HIF3A-211ENST00000528563 PARD3Q8TEW0 1356 aa22.84■■□□□ 1.25
HIF3A-211ENST00000528563 IGSF1Q8N6C5 1336 aa22.84■■□□□ 1.25
HIF3A-211ENST00000528563 IL13P35225 146 aa22.84■■□□□ 1.25
HIF3A-211ENST00000528563 ACSBG1Q96GR2 724 aa22.84■■□□□ 1.25
HIF3A-211ENST00000528563 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.82■■□□□ 1.24
HIF3A-211ENST00000528563 SHANK3Q9BYB0 1731 aa22.81■■□□□ 1.24
HIF3A-211ENST00000528563 CYP27B1O15528 508 aa22.8■■□□□ 1.24
HIF3A-211ENST00000528563 KAT6BQ8WYB5 2073 aa22.8■■□□□ 1.24
HIF3A-211ENST00000528563 PCDH11XQ9BZA7 1347 aa22.79■■□□□ 1.24
HIF3A-211ENST00000528563 PCDH11YQ9BZA8 1340 aa22.79■■□□□ 1.24
HIF3A-211ENST00000528563 PROM2Q8N271 834 aa22.79■■□□□ 1.24
HIF3A-211ENST00000528563 SPG7Q9UQ90 795 aa22.79■■□□□ 1.24
HIF3A-211ENST00000528563 PRIM1P49642 420 aaKnown RBP22.78■■□□□ 1.24
HIF3A-211ENST00000528563 NHSQ6T4R5 1651 aa22.77■■□□□ 1.24
HIF3A-211ENST00000528563 AEBP1Q8IUX7 1158 aa22.76■■□□□ 1.23
HIF3A-211ENST00000528563 PLEKHG2Q9H7P9 1386 aa22.76■■□□□ 1.23
HIF3A-211ENST00000528563 NKX1-1Q15270 411 aaPredicted RBP22.75■■□□□ 1.23
HIF3A-211ENST00000528563 SULT6B1Q6IMI4 303 aa22.75■■□□□ 1.23
HIF3A-211ENST00000528563 PKD1L3Q7Z443 1732 aa22.75■■□□□ 1.23
HIF3A-211ENST00000528563 DIAPH1O60610 1272 aaKnown RBP22.74■■□□□ 1.23
HIF3A-211ENST00000528563 DDX10Q13206 875 aaKnown RBP22.74■■□□□ 1.23
HIF3A-211ENST00000528563 KDRP35968 1356 aa22.74■■□□□ 1.23
HIF3A-211ENST00000528563 PPP2R1AP30153 589 aa22.73■■□□□ 1.23
HIF3A-211ENST00000528563 RGPD3A6NKT7 1758 aaPredicted RBP22.73■■□□□ 1.23
HIF3A-211ENST00000528563 RGPD4Q7Z3J3 1758 aa22.73■■□□□ 1.23
HIF3A-211ENST00000528563 TXNRD1Q16881 649 aa22.73■■□□□ 1.23
HIF3A-211ENST00000528563 SYTL4Q96C24 671 aaPredicted RBP22.73■■□□□ 1.23
HIF3A-211ENST00000528563 RREB1Q92766 1687 aa22.72■■□□□ 1.23
HIF3A-211ENST00000528563 PLEKHO1Q53GL0 409 aaPredicted RBP22.71■■□□□ 1.23
HIF3A-211ENST00000528563 IFNL2Q8IZJ0 200 aa22.71■■□□□ 1.23
HIF3A-211ENST00000528563 BTAF1O14981 1849 aa22.7■■□□□ 1.22
HIF3A-211ENST00000528563 PHKG2P15735 406 aa22.7■■□□□ 1.22
HIF3A-211ENST00000528563 AMOTQ4VCS5 1084 aa22.7■■□□□ 1.22
HIF3A-211ENST00000528563 COL3A1P02461 1466 aaPredicted RBP22.69■■□□□ 1.22
HIF3A-211ENST00000528563 PSDA5PKW4 1024 aaPredicted RBP22.69■■□□□ 1.22
HIF3A-211ENST00000528563 R3HDM1Q15032 1099 aaKnown RBP22.69■■□□□ 1.22
HIF3A-211ENST00000528563 NBPF14Q5TI25 921 aa22.69■■□□□ 1.22
HIF3A-211ENST00000528563 NUP188Q5SRE5 1749 aa22.68■■□□□ 1.22
HIF3A-211ENST00000528563 DOT1LQ8TEK3 1739 aa22.68■■□□□ 1.22
HIF3A-211ENST00000528563 HMOX1P09601 288 aa22.66■■□□□ 1.22
HIF3A-211ENST00000528563 CFAP53Q96M91 514 aa22.66■■□□□ 1.22
HIF3A-211ENST00000528563 ZNF530Q6P9A1 599 aaPredicted RBP22.65■■□□□ 1.22
HIF3A-211ENST00000528563 MPRIPQ6WCQ1 1025 aa22.65■■□□□ 1.22
HIF3A-211ENST00000528563 LRRC4BQ9NT99 713 aa22.64■■□□□ 1.21
HIF3A-211ENST00000528563 U2SURPO15042 1029 aaKnown RBP22.63■■□□□ 1.21
HIF3A-211ENST00000528563 PIGBQ92521 554 aa22.63■■□□□ 1.21
HIF3A-211ENST00000528563 ANO8Q9HCE9 1232 aaPredicted RBP22.63■■□□□ 1.21
HIF3A-211ENST00000528563 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
HIF3A-211ENST00000528563 SLC27A3Q5K4L6 730 aa22.62■■□□□ 1.21
HIF3A-211ENST00000528563 DCAF5Q96JK2 942 aa22.62■■□□□ 1.21
HIF3A-211ENST00000528563 TOGARAM1Q9Y4F4 1720 aa22.6■■□□□ 1.21
HIF3A-211ENST00000528563 RALBP1Q15311 655 aa22.6■■□□□ 1.21
HIF3A-211ENST00000528563 ERVV-2B6SEH9 535 aa22.6■■□□□ 1.21
HIF3A-211ENST00000528563 C1orf141Q5JVX7 400 aa22.6■■□□□ 1.21
HIF3A-211ENST00000528563 NUDCQ9Y266 331 aa22.6■■□□□ 1.21
HIF3A-211ENST00000528563 ITGB4P16144 1822 aa22.59■■□□□ 1.21
HIF3A-211ENST00000528563 KCNQ4P56696 695 aa22.58■■□□□ 1.2
HIF3A-211ENST00000528563 SLC15A2Q16348 729 aa22.58■■□□□ 1.2
HIF3A-211ENST00000528563 TMOD3Q9NYL9 352 aa22.58■■□□□ 1.2
HIF3A-211ENST00000528563 MTHFSDQ2M296 383 aaKnown RBP22.57■■□□□ 1.2
HIF3A-211ENST00000528563 SMARCC1Q92922 1105 aaPredicted RBP22.57■■□□□ 1.2
HIF3A-211ENST00000528563 STK32BQ9NY57 414 aa22.57■■□□□ 1.2
HIF3A-211ENST00000528563 AKAP4Q5JQC9 854 aa22.56■■□□□ 1.2
HIF3A-211ENST00000528563 KDM6AO15550 1401 aaPredicted RBP22.56■■□□□ 1.2
HIF3A-211ENST00000528563 SRCAPQ6ZRS2 3230 aa22.56■■□□□ 1.2
HIF3A-211ENST00000528563 LY75O60449 1722 aa22.55■■□□□ 1.2
HIF3A-211ENST00000528563 CCNL1Q9UK58 526 aaPredicted RBP22.55■■□□□ 1.2
HIF3A-211ENST00000528563 PALLDQ8WX93 1383 aa22.55■■□□□ 1.2
HIF3A-211ENST00000528563 ZNF316A6NFI3 1004 aaPredicted RBP22.54■■□□□ 1.2
HIF3A-211ENST00000528563 U2AF1L5P0DN76 240 aaPredicted RBP22.54■■□□□ 1.2
HIF3A-211ENST00000528563 U2AF1Q01081 240 aaKnown RBP eCLIP22.54■■□□□ 1.2
HIF3A-211ENST00000528563 RSPH6AQ9H0K4 717 aa22.54■■□□□ 1.2
HIF3A-211ENST00000528563 ASAP1Q9ULH1 1129 aa22.54■■□□□ 1.2
HIF3A-211ENST00000528563 AKT1S1Q96B36 256 aa22.54■■□□□ 1.2
HIF3A-211ENST00000528563 FCHSD2O94868 740 aa22.53■■□□□ 1.2
HIF3A-211ENST00000528563 CABP4P57796 275 aa22.53■■□□□ 1.2
HIF3A-211ENST00000528563 PHACTR3Q96KR7 559 aa22.53■■□□□ 1.2
HIF3A-211ENST00000528563 ATG3Q9NT62 314 aa22.53■■□□□ 1.2
HIF3A-211ENST00000528563 PAPPAQ13219 1627 aa22.52■■□□□ 1.2
HIF3A-211ENST00000528563 PRKAR2BP31323 418 aa22.52■■□□□ 1.2
HIF3A-211ENST00000528563 ZNF827Q17R98 1081 aa22.52■■□□□ 1.2
HIF3A-211ENST00000528563 PDGFDQ9GZP0 370 aaPredicted RBP22.52■■□□□ 1.2
HIF3A-211ENST00000528563 LGR6Q9HBX8 967 aa22.52■■□□□ 1.2
HIF3A-211ENST00000528563 NFATC2IPQ8NCF5 419 aa22.51■■□□□ 1.19
HIF3A-211ENST00000528563 RNMTO43148 476 aaKnown RBP22.49■■□□□ 1.19
HIF3A-211ENST00000528563 MYBBP1AQ9BQG0 1328 aaKnown RBP22.48■■□□□ 1.19
HIF3A-211ENST00000528563 LOC102724428A0A0B4J2F2 783 aa22.48■■□□□ 1.19
HIF3A-211ENST00000528563 HMGB2P26583 209 aaKnown RBP22.48■■□□□ 1.19
HIF3A-211ENST00000528563 SIK1P57059 783 aa22.48■■□□□ 1.19
HIF3A-211ENST00000528563 GAS2L2Q8NHY3 880 aa22.48■■□□□ 1.19
HIF3A-211ENST00000528563 PRKRIP1Q9H875 184 aaPredicted RBP22.47■■□□□ 1.19
HIF3A-211ENST00000528563 SCN11AQ9UI33 1791 aa22.46■■□□□ 1.19
HIF3A-211ENST00000528563 SLC52A2Q9HAB3 445 aa22.46■■□□□ 1.19
HIF3A-211ENST00000528563 GNAT3A8MTJ3 354 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms