RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PLSCR1O15162 318 aa14.72□□□□□ -0.05
CD44-227ENST00000528086 R3HDM1Q15032 1099 aaKnown RBP14.72□□□□□ -0.05
CD44-227ENST00000528086 ACSBG1Q96GR2 724 aa14.72□□□□□ -0.05
CD44-227ENST00000528086 ANO8Q9HCE9 1232 aaPredicted RBP14.72□□□□□ -0.05
CD44-227ENST00000528086 SMG6Q86US8 1419 aaKnown RBP14.72□□□□□ -0.05
CD44-227ENST00000528086 PKD1L3Q7Z443 1732 aa14.72□□□□□ -0.05
CD44-227ENST00000528086 DOT1LQ8TEK3 1739 aa14.72□□□□□ -0.05
CD44-227ENST00000528086 TNNT2P45379 298 aaPredicted RBP14.71□□□□□ -0.05
CD44-227ENST00000528086 NSD2O96028 1365 aa14.71□□□□□ -0.06
CD44-227ENST00000528086 TOGARAM1Q9Y4F4 1720 aa14.7□□□□□ -0.06
CD44-227ENST00000528086 DDX54Q8TDD1 881 aaKnown RBP14.7□□□□□ -0.06
CD44-227ENST00000528086 EYA1Q99502 592 aa14.7□□□□□ -0.06
CD44-227ENST00000528086 LRP5O75197 1615 aa14.7□□□□□ -0.06
CD44-227ENST00000528086 EIF4A2Q14240 407 aaKnown RBP14.69□□□□□ -0.06
CD44-227ENST00000528086 PAPPAQ13219 1627 aa14.69□□□□□ -0.06
CD44-227ENST00000528086 PPM1GO15355 546 aaPredicted RBP14.68□□□□□ -0.06
CD44-227ENST00000528086 CYP27B1O15528 508 aa14.68□□□□□ -0.06
CD44-227ENST00000528086 ZCRB1Q8TBF4 217 aaKnown RBP14.68□□□□□ -0.06
CD44-227ENST00000528086 CASZ1Q86V15 1759 aa14.68□□□□□ -0.06
CD44-227ENST00000528086 PDGFDQ9GZP0 370 aaPredicted RBP14.67□□□□□ -0.06
CD44-227ENST00000528086 TXNRD1Q16881 649 aa14.66□□□□□ -0.06
CD44-227ENST00000528086 LRRC4BQ9NT99 713 aa14.66□□□□□ -0.06
CD44-227ENST00000528086 ITGB4P16144 1822 aa14.66□□□□□ -0.06
CD44-227ENST00000528086 LY75O60449 1722 aa14.66□□□□□ -0.06
CD44-227ENST00000528086 PRIM1P49642 420 aaKnown RBP14.65□□□□□ -0.06
CD44-227ENST00000528086 MORC1Q86VD1 984 aa14.64□□□□□ -0.07
CD44-227ENST00000528086 KNSTRNQ9Y448 316 aa14.64□□□□□ -0.07
CD44-227ENST00000528086 IGSF1Q8N6C5 1336 aa14.64□□□□□ -0.07
CD44-227ENST00000528086 RAPGEF4Q8WZA2 1011 aa14.63□□□□□ -0.07
CD44-227ENST00000528086 TUBGCP6Q96RT7 1819 aa14.62□□□□□ -0.07
CD44-227ENST00000528086 TATP17735 454 aaPredicted RBP14.62□□□□□ -0.07
CD44-227ENST00000528086 AEBP1Q8IUX7 1158 aa14.62□□□□□ -0.07
CD44-227ENST00000528086 KCNQ4P56696 695 aa14.61□□□□□ -0.07
CD44-227ENST00000528086 NPC1L1Q9UHC9 1359 aa14.6□□□□□ -0.07
CD44-227ENST00000528086 IL13P35225 146 aa14.6□□□□□ -0.07
CD44-227ENST00000528086 NKX1-1Q15270 411 aaPredicted RBP14.6□□□□□ -0.07
CD44-227ENST00000528086 ZNF827Q17R98 1081 aa14.6□□□□□ -0.07
CD44-227ENST00000528086 CC2D1BQ5T0F9 858 aaKnown RBP14.6□□□□□ -0.07
CD44-227ENST00000528086 COL3A1P02461 1466 aaPredicted RBP14.59□□□□□ -0.07
CD44-227ENST00000528086 PCDH11XQ9BZA7 1347 aa14.59□□□□□ -0.07
CD44-227ENST00000528086 PCDH11YQ9BZA8 1340 aa14.59□□□□□ -0.07
CD44-227ENST00000528086 MTHFSP49914 203 aa14.58□□□□□ -0.08
CD44-227ENST00000528086 KDRP35968 1356 aa14.58□□□□□ -0.08
CD44-227ENST00000528086 TAF1LQ8IZX4 1826 aa14.57□□□□□ -0.08
CD44-227ENST00000528086 SLC15A2Q16348 729 aa14.57□□□□□ -0.08
CD44-227ENST00000528086 NBPF14Q5TI25 921 aa14.57□□□□□ -0.08
CD44-227ENST00000528086 AKT1S1Q96B36 256 aa14.57□□□□□ -0.08
CD44-227ENST00000528086 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.57□□□□□ -0.08
CD44-227ENST00000528086 QSER1Q2KHR3 1735 aa14.56□□□□□ -0.08
CD44-227ENST00000528086 PHKG2P15735 406 aa14.56□□□□□ -0.08
CD44-227ENST00000528086 SYTL4Q96C24 671 aaPredicted RBP14.56□□□□□ -0.08
CD44-227ENST00000528086 PIGBQ92521 554 aa14.55□□□□□ -0.08
CD44-227ENST00000528086 KDM6AO15550 1401 aaPredicted RBP14.55□□□□□ -0.08
CD44-227ENST00000528086 PTGER2P43116 358 aa14.54□□□□□ -0.08
CD44-227ENST00000528086 COL24A1Q17RW2 1714 aa14.54□□□□□ -0.08
CD44-227ENST00000528086 PLEKHG2Q9H7P9 1386 aa14.53□□□□□ -0.08
CD44-227ENST00000528086 CNGB1Q14028 1251 aaPredicted RBP14.53□□□□□ -0.08
CD44-227ENST00000528086 SULT6B1Q6IMI4 303 aa14.53□□□□□ -0.08
CD44-227ENST00000528086 SGIP1Q9BQI5 828 aa14.53□□□□□ -0.08
CD44-227ENST00000528086 SPG7Q9UQ90 795 aa14.53□□□□□ -0.08
CD44-227ENST00000528086 C5P01031 1676 aa14.52□□□□□ -0.08
CD44-227ENST00000528086 SLC27A3Q5K4L6 730 aa14.52□□□□□ -0.09
CD44-227ENST00000528086 MPRIPQ6WCQ1 1025 aa14.52□□□□□ -0.09
CD44-227ENST00000528086 AMIGO3Q86WK7 504 aa14.52□□□□□ -0.09
CD44-227ENST00000528086 VIRMAQ69YN4 1812 aaKnown RBP14.52□□□□□ -0.09
CD44-227ENST00000528086 ZBTB7AO95365 584 aa14.51□□□□□ -0.09
CD44-227ENST00000528086 IFNL2Q8IZJ0 200 aa14.51□□□□□ -0.09
CD44-227ENST00000528086 STK32BQ9NY57 414 aa14.51□□□□□ -0.09
CD44-227ENST00000528086 SCN11AQ9UI33 1791 aa14.5□□□□□ -0.09
CD44-227ENST00000528086 PALLDQ8WX93 1383 aa14.5□□□□□ -0.09
CD44-227ENST00000528086 PNPLA7Q6ZV29 1317 aa14.5□□□□□ -0.09
CD44-227ENST00000528086 SLC4A9Q96Q91 983 aa14.5□□□□□ -0.09
CD44-227ENST00000528086 ASAP1Q9ULH1 1129 aa14.5□□□□□ -0.09
CD44-227ENST00000528086 ADAMTS7Q9UKP4 1686 aa14.49□□□□□ -0.09
CD44-227ENST00000528086 ATG3Q9NT62 314 aa14.49□□□□□ -0.09
CD44-227ENST00000528086 CCNL1Q9UK58 526 aaPredicted RBP14.49□□□□□ -0.09
CD44-227ENST00000528086 ATF5Q9Y2D1 282 aaPredicted RBP14.49□□□□□ -0.09
CD44-227ENST00000528086 UBR3Q6ZT12 1888 aa14.48□□□□□ -0.09
CD44-227ENST00000528086 HMOX1P09601 288 aa14.48□□□□□ -0.09
CD44-227ENST00000528086 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
CD44-227ENST00000528086 SMIM5Q71RC9 77 aa14.48□□□□□ -0.09
CD44-227ENST00000528086 SPON1Q9HCB6 807 aa14.48□□□□□ -0.09
CD44-227ENST00000528086 C4BP0C0L5 1744 aa14.47□□□□□ -0.09
CD44-227ENST00000528086 ITPK1Q13572 414 aa14.47□□□□□ -0.09
CD44-227ENST00000528086 PLEKHO1Q53GL0 409 aaPredicted RBP14.47□□□□□ -0.09
CD44-227ENST00000528086 MYH14Q7Z406 1995 aaKnown RBP14.46□□□□□ -0.09
CD44-227ENST00000528086 DIAPH1O60610 1272 aaKnown RBP14.46□□□□□ -0.09
CD44-227ENST00000528086 PPP2R1AP30153 589 aa14.46□□□□□ -0.09
CD44-227ENST00000528086 MTHFSDQ2M296 383 aaKnown RBP14.45□□□□□ -0.1
CD44-227ENST00000528086 AMOTQ4VCS5 1084 aa14.45□□□□□ -0.1
CD44-227ENST00000528086 COL23A1Q86Y22 540 aaPredicted RBP14.45□□□□□ -0.1
CD44-227ENST00000528086 LINC00116Q8NCU8 138 aa14.45□□□□□ -0.1
CD44-227ENST00000528086 LGR6Q9HBX8 967 aa14.45□□□□□ -0.1
CD44-227ENST00000528086 ZNF831Q5JPB2 1677 aa14.45□□□□□ -0.1
CD44-227ENST00000528086 COL5A3P25940 1745 aaPredicted RBP14.44□□□□□ -0.1
CD44-227ENST00000528086 LOC102724428A0A0B4J2F2 783 aa14.44□□□□□ -0.1
CD44-227ENST00000528086 ERVV-2B6SEH9 535 aa14.44□□□□□ -0.1
CD44-227ENST00000528086 SIK1P57059 783 aa14.44□□□□□ -0.1
CD44-227ENST00000528086 DCAF5Q96JK2 942 aa14.44□□□□□ -0.1
CD44-227ENST00000528086 MTFR1LQ9H019 292 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms