RNA–Protein interactions for RNA: ENST00000527125.1

SCN3B-203, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

TSL 3

Gene SCN3B, Length 3,289 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-203ENST00000527125 OSBPL3Q9H4L5 887 aa11.5□□□□□ -0.57
SCN3B-203ENST00000527125 MBIPQ9NS73 344 aa11.49□□□□□ -0.57
SCN3B-203ENST00000527125 CHD2O14647 1828 aaKnown RBP11.49□□□□□ -0.57
SCN3B-203ENST00000527125 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.49□□□□□ -0.57
SCN3B-203ENST00000527125 TULP1O00294 542 aaPredicted RBP11.48□□□□□ -0.57
SCN3B-203ENST00000527125 VSIG10Q8N0Z9 540 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 ANKRD44Q8N8A2 993 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 RTL1A6NKG5 1358 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 USP54Q70EL1 1684 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 EDC4Q6P2E9 1401 aaKnown RBP11.48□□□□□ -0.57
SCN3B-203ENST00000527125 PRIM1P49642 420 aaKnown RBP11.48□□□□□ -0.57
SCN3B-203ENST00000527125 CFAP44Q96MT7 982 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 ZKSCAN5Q9Y2L8 839 aa11.48□□□□□ -0.57
SCN3B-203ENST00000527125 MARF1Q9Y4F3 1742 aaKnown RBP11.48□□□□□ -0.57
SCN3B-203ENST00000527125 CUL4AQ13619 759 aa11.47□□□□□ -0.57
SCN3B-203ENST00000527125 LRSAM1Q6UWE0 723 aa11.47□□□□□ -0.57
SCN3B-203ENST00000527125 TRIM44Q96DX7 344 aaPredicted RBP11.47□□□□□ -0.57
SCN3B-203ENST00000527125 C1orf115Q9H7X2 142 aa11.47□□□□□ -0.57
SCN3B-203ENST00000527125 TMEM63CQ9P1W3 806 aa11.47□□□□□ -0.57
SCN3B-203ENST00000527125 NSFL1CQ9UNZ2 370 aaKnown RBP11.47□□□□□ -0.57
SCN3B-203ENST00000527125 U2SURPO15042 1029 aaKnown RBP11.46□□□□□ -0.57
SCN3B-203ENST00000527125 PRKAR2BP31323 418 aa11.46□□□□□ -0.57
SCN3B-203ENST00000527125 GNAI1P63096 354 aa11.46□□□□□ -0.57
SCN3B-203ENST00000527125 C8orf58Q8NAV2 365 aa11.46□□□□□ -0.57
SCN3B-203ENST00000527125 TERF2IPQ9NYB0 399 aa11.46□□□□□ -0.57
SCN3B-203ENST00000527125 DDX49Q9Y6V7 483 aaKnown RBP11.46□□□□□ -0.57
SCN3B-203ENST00000527125 TAOK2Q9UL54 1235 aa11.46□□□□□ -0.58
SCN3B-203ENST00000527125 IDI1Q13907 227 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 CRB1P82279 1406 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 TECPR2O15040 1411 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 BRD1O95696 1058 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 CEP85Q6P2H3 762 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 KLHL34Q8N239 644 aa11.45□□□□□ -0.58
SCN3B-203ENST00000527125 ZGPATQ8N5A5 531 aaKnown RBP11.45□□□□□ -0.58
SCN3B-203ENST00000527125 SDSP20132 328 aa11.44□□□□□ -0.58
SCN3B-203ENST00000527125 C16orf71Q8IYS4 520 aaPredicted RBP11.44□□□□□ -0.58
SCN3B-203ENST00000527125 RIMS1Q86UR5 1692 aaKnown RBP11.44□□□□□ -0.58
SCN3B-203ENST00000527125 GTF2F1P35269 517 aaKnown RBP eCLIP11.44□□□□□ -0.58
SCN3B-203ENST00000527125 OTUD7AQ8TE49 926 aaPredicted RBP11.44□□□□□ -0.58
SCN3B-203ENST00000527125 MAP7D2Q96T17 732 aa11.44□□□□□ -0.58
SCN3B-203ENST00000527125 API5Q9BZZ5 524 aaKnown RBP11.44□□□□□ -0.58
SCN3B-203ENST00000527125 SLC52A1Q9NWF4 448 aa11.44□□□□□ -0.58
SCN3B-203ENST00000527125 MCTP1Q6DN14 999 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 FOXD4L1Q9NU39 408 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 GOLGA6L22H0YM25 854 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 RPAP2Q8IXW5 612 aaPredicted RBP11.43□□□□□ -0.58
SCN3B-203ENST00000527125 SSH2Q76I76 1423 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 DYNC1I1O14576 645 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 CAVIN1Q6NZI2 390 aaKnown RBP11.43□□□□□ -0.58
SCN3B-203ENST00000527125 RPAP1Q9BWH6 1393 aaPredicted RBP11.43□□□□□ -0.58
SCN3B-203ENST00000527125 A2ML1A8K2U0 1454 aa11.43□□□□□ -0.58
SCN3B-203ENST00000527125 TWISTNBQ3B726 338 aaPredicted RBP11.42□□□□□ -0.58
SCN3B-203ENST00000527125 TMEM87AQ8NBN3 555 aa11.42□□□□□ -0.58
SCN3B-203ENST00000527125 MSH6P52701 1360 aa11.42□□□□□ -0.58
SCN3B-203ENST00000527125 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
SCN3B-203ENST00000527125 ARHGEF10O15013 1369 aa11.41□□□□□ -0.58
SCN3B-203ENST00000527125 PRAM1Q96QH2 718 aa11.41□□□□□ -0.58
SCN3B-203ENST00000527125 CDK19Q9BWU1 502 aa11.41□□□□□ -0.58
SCN3B-203ENST00000527125 RBM27Q9P2N5 1060 aaKnown RBP11.41□□□□□ -0.58
SCN3B-203ENST00000527125 AGLP35573 1532 aa11.41□□□□□ -0.58
SCN3B-203ENST00000527125 INTS4Q96HW7 963 aaKnown RBP11.41□□□□□ -0.58
SCN3B-203ENST00000527125 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.41□□□□□ -0.58
SCN3B-203ENST00000527125 CHL1O00533 1208 aa11.4□□□□□ -0.58
SCN3B-203ENST00000527125 DIP2AQ14689 1571 aa11.4□□□□□ -0.58
SCN3B-203ENST00000527125 OVOS2A0A0J9YW53 1432 aa11.4□□□□□ -0.58
SCN3B-203ENST00000527125 OVOS2Q6IE36 1432 aa11.4□□□□□ -0.58
SCN3B-203ENST00000527125 EPB41L2O43491 1005 aaKnown RBP11.4□□□□□ -0.59
SCN3B-203ENST00000527125 CABP1Q9NZU7 370 aa11.4□□□□□ -0.59
SCN3B-203ENST00000527125 PTPRCP08575 1304 aa11.39□□□□□ -0.59
SCN3B-203ENST00000527125 PXDNLA1KZ92 1463 aa11.39□□□□□ -0.59
SCN3B-203ENST00000527125 SMAP1Q8IYB5 467 aaPredicted RBP11.39□□□□□ -0.59
SCN3B-203ENST00000527125 MSNP26038 577 aaKnown RBP11.39□□□□□ -0.59
SCN3B-203ENST00000527125 CSPP1Q1MSJ5 1256 aa11.39□□□□□ -0.59
SCN3B-203ENST00000527125 CHAMP1Q96JM3 812 aa11.39□□□□□ -0.59
SCN3B-203ENST00000527125 SRPK2P78362 688 aaKnown RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 XPCQ01831 940 aaPredicted RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 SASS6Q6UVJ0 657 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 SPTLC3Q9NUV7 552 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 PRPF40AO75400 957 aaKnown RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 FBLN1P23142 703 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 HDGFL2Q7Z4V5 671 aaPredicted RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 CCDC39Q9UFE4 941 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 MYH15Q9Y2K3 1946 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 CHGAP10645 457 aaKnown RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 ANAPC15P60006 121 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 MTERF4Q7Z6M4 381 aaKnown RBP11.38□□□□□ -0.59
SCN3B-203ENST00000527125 ZNF710Q8N1W2 664 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 FUCA2Q9BTY2 467 aa11.38□□□□□ -0.59
SCN3B-203ENST00000527125 NWD1Q149M9 1564 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 MINK1Q8N4C8 1332 aaPredicted RBP11.37□□□□□ -0.59
SCN3B-203ENST00000527125 MBD3O95983 291 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 TMX3Q96JJ7 454 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 EMILIN1Q9Y6C2 1016 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 UQCRHLA0A096LP55 91 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 UQCRHP07919 91 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 MYRIPQ8NFW9 859 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 STAP2Q9UGK3 403 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 MED1Q15648 1581 aaPredicted RBP11.37□□□□□ -0.59
SCN3B-203ENST00000527125 KDM3BQ7LBC6 1761 aa11.37□□□□□ -0.59
SCN3B-203ENST00000527125 ERC2O15083 957 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms