RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 EDC4Q6P2E9 1401 aaKnown RBP9.23□□□□□ -0.93
CD44-221ENST00000526000 FYB1O15117 783 aa9.23□□□□□ -0.93
CD44-221ENST00000526000 PPM1GO15355 546 aaPredicted RBP9.23□□□□□ -0.93
CD44-221ENST00000526000 YBX3P16989 372 aaKnown RBP eCLIP9.23□□□□□ -0.93
CD44-221ENST00000526000 TATP17735 454 aaPredicted RBP9.23□□□□□ -0.93
CD44-221ENST00000526000 HSP90AB2PQ58FF8 381 aa9.23□□□□□ -0.93
CD44-221ENST00000526000 MPRIPQ6WCQ1 1025 aa9.23□□□□□ -0.93
CD44-221ENST00000526000 RAPGEF4Q8WZA2 1011 aa9.23□□□□□ -0.93
CD44-221ENST00000526000 TESK2Q96S53 571 aa9.23□□□□□ -0.93
CD44-221ENST00000526000 GIGYF1O75420 1035 aaPredicted RBP9.22□□□□□ -0.93
CD44-221ENST00000526000 PHF14O94880 888 aa9.21□□□□□ -0.94
CD44-221ENST00000526000 ZNF526Q8TF50 670 aaPredicted RBP9.21□□□□□ -0.94
CD44-221ENST00000526000 POLR3GLQ9BT43 218 aa9.21□□□□□ -0.94
CD44-221ENST00000526000 AKAP12Q02952 1782 aa9.21□□□□□ -0.94
CD44-221ENST00000526000 USP47Q96K76 1375 aa9.21□□□□□ -0.94
CD44-221ENST00000526000 TRIM26Q12899 539 aaPredicted RBP9.2□□□□□ -0.94
CD44-221ENST00000526000 PUS7Q96PZ0 661 aaKnown RBP9.2□□□□□ -0.94
CD44-221ENST00000526000 ANKRD36BQ8N2N9 1353 aa9.2□□□□□ -0.94
CD44-221ENST00000526000 CYP27B1O15528 508 aa9.19□□□□□ -0.94
CD44-221ENST00000526000 TMF1P82094 1093 aa9.19□□□□□ -0.94
CD44-221ENST00000526000 AMIGO3Q86WK7 504 aa9.19□□□□□ -0.94
CD44-221ENST00000526000 EMILIN1Q9Y6C2 1016 aa9.19□□□□□ -0.94
CD44-221ENST00000526000 NSD2O96028 1365 aa9.19□□□□□ -0.94
CD44-221ENST00000526000 BTAF1O14981 1849 aa9.18□□□□□ -0.94
CD44-221ENST00000526000 GRIN3BO60391 1043 aa9.18□□□□□ -0.94
CD44-221ENST00000526000 MEGF6O75095 1541 aa9.18□□□□□ -0.94
CD44-221ENST00000526000 ABCC6O95255 1503 aa9.18□□□□□ -0.94
CD44-221ENST00000526000 TNNT2P45379 298 aaPredicted RBP9.18□□□□□ -0.94
CD44-221ENST00000526000 PIGBQ92521 554 aa9.18□□□□□ -0.94
CD44-221ENST00000526000 WNK3Q9BYP7 1800 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 RGPD3A6NKT7 1758 aaPredicted RBP9.17□□□□□ -0.94
CD44-221ENST00000526000 RGPD4Q7Z3J3 1758 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 NHSQ6T4R5 1651 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 MAP3K5Q99683 1374 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 AK7Q96M32 723 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 CARD14Q9BXL6 1004 aa9.17□□□□□ -0.94
CD44-221ENST00000526000 MON2Q7Z3U7 1717 aa9.16□□□□□ -0.94
CD44-221ENST00000526000 PALLDQ8WX93 1383 aa9.15□□□□□ -0.94
CD44-221ENST00000526000 LTN1O94822 1766 aa9.15□□□□□ -0.94
CD44-221ENST00000526000 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.15□□□□□ -0.94
CD44-221ENST00000526000 FLAD1Q8NFF5 587 aa9.15□□□□□ -0.94
CD44-221ENST00000526000 ASAP1Q9ULH1 1129 aa9.15□□□□□ -0.94
CD44-221ENST00000526000 PCDH11XQ9BZA7 1347 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 PCDH11YQ9BZA8 1340 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 PAPPAQ13219 1627 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 ATP6V1AP38606 617 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 LINC00116Q8NCU8 138 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 SMARCC1Q92922 1105 aaPredicted RBP9.14□□□□□ -0.95
CD44-221ENST00000526000 EYA1Q99502 592 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 GPBP1L1Q9HC44 474 aaPredicted RBP9.14□□□□□ -0.95
CD44-221ENST00000526000 CD2APQ9Y5K6 639 aa9.14□□□□□ -0.95
CD44-221ENST00000526000 CGNL1Q0VF96 1302 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 IGSF1Q8N6C5 1336 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 LOC102724428A0A0B4J2F2 783 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 GNPATO15228 680 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 SLC24A1O60721 1099 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 SIK1P57059 783 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 ITPK1Q13572 414 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 RBM42Q9BTD8 480 aaKnown RBP9.13□□□□□ -0.95
CD44-221ENST00000526000 TMOD3Q9NYL9 352 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 SPG7Q9UQ90 795 aa9.13□□□□□ -0.95
CD44-221ENST00000526000 SMG6Q86US8 1419 aaKnown RBP9.13□□□□□ -0.95
CD44-221ENST00000526000 INSRP06213 1382 aa9.12□□□□□ -0.95
CD44-221ENST00000526000 RGPD2P0DJD1 1756 aa9.12□□□□□ -0.95
CD44-221ENST00000526000 ATP10DQ9P241 1426 aa9.12□□□□□ -0.95
CD44-221ENST00000526000 A0A0G2JLW4 131 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 CDCA8Q53HL2 280 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 ATG3Q9NT62 314 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 POLKQ9UBT6 870 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 CHD4Q14839 1912 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 RTL1A6NKG5 1358 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 FLT4P35916 1363 aa9.11□□□□□ -0.95
CD44-221ENST00000526000 MMP10P09238 476 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 PHKG2P15735 406 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 NKX1-1Q15270 411 aaPredicted RBP9.1□□□□□ -0.95
CD44-221ENST00000526000 ARHGAP27Q6ZUM4 889 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 IFNL2Q8IZJ0 200 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 PCGF6Q9BYE7 350 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 BCS1LQ9Y276 419 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 NSD3Q9BZ95 1437 aa9.1□□□□□ -0.95
CD44-221ENST00000526000 DOT1LQ8TEK3 1739 aa9.09□□□□□ -0.95
CD44-221ENST00000526000 EIF4A2Q14240 407 aaKnown RBP9.09□□□□□ -0.95
CD44-221ENST00000526000 TRAPPC3LQ5T215 181 aa9.09□□□□□ -0.95
CD44-221ENST00000526000 FAM208AQ9UK61 1670 aaKnown RBP9.09□□□□□ -0.95
CD44-221ENST00000526000 WASHC2AQ641Q2 1341 aa9.08□□□□□ -0.96
CD44-221ENST00000526000 PTCD1O75127 700 aaKnown RBP9.08□□□□□ -0.96
CD44-221ENST00000526000 SSFA2P28290 1259 aa9.08□□□□□ -0.96
CD44-221ENST00000526000 IFFO2Q5TF58 517 aa9.08□□□□□ -0.96
CD44-221ENST00000526000 ARHGEF1Q92888 912 aaKnown RBP9.08□□□□□ -0.96
CD44-221ENST00000526000 SLC4A9Q96Q91 983 aa9.08□□□□□ -0.96
CD44-221ENST00000526000 RTCBQ9Y3I0 505 aaKnown RBP9.08□□□□□ -0.96
CD44-221ENST00000526000 USP54Q70EL1 1684 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 FCHSD2O94868 740 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 DPEP1P16444 411 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 HSPA6P17066 643 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 HMGB2P26583 209 aaKnown RBP9.07□□□□□ -0.96
CD44-221ENST00000526000 CABP4P57796 275 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 TUBGCP6Q96RT7 1819 aa9.07□□□□□ -0.96
CD44-221ENST00000526000 KIF3CO14782 793 aa9.06□□□□□ -0.96
CD44-221ENST00000526000 RFC4P35249 363 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms