RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 GPCPD1Q9NPB8 672 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 ZNF644Q9H582 1327 aaPredicted RBP7.42□□□□□ -1.22
CD44-218ENST00000525469 NCOA2Q15596 1464 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 MDM2Q00987 491 aaPredicted RBP7.41□□□□□ -1.22
CD44-218ENST00000525469 PHOX2BQ99453 314 aa7.41□□□□□ -1.22
CD44-218ENST00000525469 ACIN1Q9UKV3 1341 aaKnown RBP7.41□□□□□ -1.22
CD44-218ENST00000525469 MTUS2Q5JR59 1369 aa7.41□□□□□ -1.22
CD44-218ENST00000525469 TMEM2Q9UHN6 1383 aa7.41□□□□□ -1.22
CD44-218ENST00000525469 AHDC1Q5TGY3 1603 aaPredicted RBP7.41□□□□□ -1.22
CD44-218ENST00000525469 CHD2O14647 1828 aaKnown RBP7.41□□□□□ -1.22
CD44-218ENST00000525469 TPRNQ4KMQ1 711 aa7.4□□□□□ -1.22
CD44-218ENST00000525469 NLRP7Q8WX94 980 aa7.4□□□□□ -1.22
CD44-218ENST00000525469 ARXQ96QS3 562 aa7.4□□□□□ -1.22
CD44-218ENST00000525469 CCDC141Q6ZP82 1450 aa7.4□□□□□ -1.22
CD44-218ENST00000525469 MBD5Q9P267 1494 aa7.4□□□□□ -1.22
CD44-218ENST00000525469 PIK3C2BO00750 1634 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 LRP5O75197 1615 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 NWD1Q149M9 1564 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 FYCO1Q9BQS8 1478 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 ATP6V1AP38606 617 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 GCGRP47871 477 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 SF3B2Q13435 895 aaKnown RBP7.39□□□□□ -1.23
CD44-218ENST00000525469 TTLL12Q14166 644 aaPredicted RBP7.39□□□□□ -1.23
CD44-218ENST00000525469 ZNF516Q92618 1163 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 TMUB1Q9BVT8 246 aa7.39□□□□□ -1.23
CD44-218ENST00000525469 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.38□□□□□ -1.23
CD44-218ENST00000525469 USP46P62068 366 aa7.38□□□□□ -1.23
CD44-218ENST00000525469 LRRC59Q96AG4 307 aaKnown RBP7.38□□□□□ -1.23
CD44-218ENST00000525469 PCGF6Q9BYE7 350 aa7.38□□□□□ -1.23
CD44-218ENST00000525469 C19orf44Q9H6X5 657 aa7.38□□□□□ -1.23
CD44-218ENST00000525469 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.38□□□□□ -1.23
CD44-218ENST00000525469 TRPC5Q9UL62 973 aaPredicted RBP7.38□□□□□ -1.23
CD44-218ENST00000525469 TET3O43151 1660 aa7.38□□□□□ -1.23
CD44-218ENST00000525469 EFCAB6Q5THR3 1501 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 NCOA3Q9Y6Q9 1424 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 ADAMTS2O95450 1211 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 ADH1BP00325 375 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 CD46P15529 392 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 YY1P25490 414 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 FUT2Q10981 343 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 PPP1R18Q6NYC8 613 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 USP21Q9UK80 565 aa7.37□□□□□ -1.23
CD44-218ENST00000525469 EIF2AK4Q9P2K8 1649 aaKnown RBP7.37□□□□□ -1.23
CD44-218ENST00000525469 PPP1R15AO75807 674 aaPredicted RBP7.36□□□□□ -1.23
CD44-218ENST00000525469 AMHR2Q16671 573 aa7.36□□□□□ -1.23
CD44-218ENST00000525469 Q3C1V9 767 aa7.36□□□□□ -1.23
CD44-218ENST00000525469 BRINP3Q76B58 766 aa7.36□□□□□ -1.23
CD44-218ENST00000525469 AK7Q96M32 723 aa7.36□□□□□ -1.23
CD44-218ENST00000525469 DIP2AQ14689 1571 aa7.36□□□□□ -1.23
CD44-218ENST00000525469 KDM4AO75164 1064 aa7.35□□□□□ -1.23
CD44-218ENST00000525469 FMNL1O95466 1100 aaPredicted RBP7.35□□□□□ -1.23
CD44-218ENST00000525469 TRIM26Q12899 539 aaPredicted RBP7.35□□□□□ -1.23
CD44-218ENST00000525469 SCUBE3Q8IX30 993 aa7.35□□□□□ -1.23
CD44-218ENST00000525469 BCL11AQ9H165 835 aa7.35□□□□□ -1.23
CD44-218ENST00000525469 CAMSAP2Q08AD1 1489 aa7.35□□□□□ -1.23
CD44-218ENST00000525469 TLL1O43897 1013 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 PUS10Q3MIT2 529 aaKnown RBP7.34□□□□□ -1.23
CD44-218ENST00000525469 MORN1Q5T089 497 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 NUTM1Q86Y26 1132 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 NKX2-3Q8TAU0 364 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 SPSB2Q99619 263 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 SLC6A16Q9GZN6 736 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 FAM217BQ9NTX9 383 aaPredicted RBP7.34□□□□□ -1.23
CD44-218ENST00000525469 V9GY48 417 aaPredicted RBP7.34□□□□□ -1.23
CD44-218ENST00000525469 SETD5Q9C0A6 1442 aa7.34□□□□□ -1.23
CD44-218ENST00000525469 MROH1Q8NDA8 1641 aa7.34□□□□□ -1.24
CD44-218ENST00000525469 IDI1Q13907 227 aa7.33□□□□□ -1.24
CD44-218ENST00000525469 SALL2Q9Y467 1007 aaPredicted RBP7.33□□□□□ -1.24
CD44-218ENST00000525469 BLMP54132 1417 aaPredicted RBP7.33□□□□□ -1.24
CD44-218ENST00000525469 ARHGAP31Q2M1Z3 1444 aa7.33□□□□□ -1.24
CD44-218ENST00000525469 KANK1Q14678 1352 aa7.33□□□□□ -1.24
CD44-218ENST00000525469 EP400Q96L91 3159 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 MYO5BQ9ULV0 1848 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 NHSL1Q5SYE7 1610 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 DEFB132Q7Z7B7 95 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 ANKLE1Q8NAG6 615 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 IRX2Q9BZI1 471 aaPredicted RBP7.32□□□□□ -1.24
CD44-218ENST00000525469 TIMELESSQ9UNS1 1208 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 ARHGEF5Q12774 1597 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 PNPLA6Q8IY17 1366 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 ASXL1Q8IXJ9 1541 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 EHBP1L1Q8N3D4 1523 aa7.32□□□□□ -1.24
CD44-218ENST00000525469 DIXDC1Q155Q3 683 aa7.31□□□□□ -1.24
CD44-218ENST00000525469 PRKD2Q9BZL6 878 aa7.31□□□□□ -1.24
CD44-218ENST00000525469 MAST1Q9Y2H9 1570 aa7.31□□□□□ -1.24
CD44-218ENST00000525469 TBX22Q9Y458 520 aa7.31□□□□□ -1.24
CD44-218ENST00000525469 PLEKHG1Q9ULL1 1385 aa7.31□□□□□ -1.24
CD44-218ENST00000525469 S1PR4O95977 384 aa7.3□□□□□ -1.24
CD44-218ENST00000525469 LAPTM4AQ15012 233 aa7.3□□□□□ -1.24
CD44-218ENST00000525469 GIGYF2Q6Y7W6 1299 aaKnown RBP7.3□□□□□ -1.24
CD44-218ENST00000525469 SLC27A5Q9Y2P5 690 aa7.3□□□□□ -1.24
CD44-218ENST00000525469 ADGRB3O60242 1522 aa7.3□□□□□ -1.24
CD44-218ENST00000525469 BRWD3Q6RI45 1802 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 ATRNO75882 1429 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 CEP162Q5TB80 1403 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 RNF223E7ERA6 249 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 TRIM66O15016 1216 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 HOXA2O43364 376 aa7.29□□□□□ -1.24
CD44-218ENST00000525469 SSTR3P32745 418 aaPredicted RBP7.29□□□□□ -1.24
CD44-218ENST00000525469 FNBP4Q8N3X1 1017 aaPredicted RBP7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms