RNA–Protein interactions for RNA: ENST00000525435.1

CCS-202, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-202ENST00000525435 COL3A1P02461 1466 aaPredicted RBP16.56■□□□□ 0.24
CCS-202ENST00000525435 TNS2Q63HR2 1409 aa16.56■□□□□ 0.24
CCS-202ENST00000525435 PLEKHO1Q53GL0 409 aaPredicted RBP16.56■□□□□ 0.24
CCS-202ENST00000525435 U2SURPO15042 1029 aaKnown RBP16.55■□□□□ 0.24
CCS-202ENST00000525435 FCHSD2O94868 740 aa16.55■□□□□ 0.24
CCS-202ENST00000525435 PARP4Q9UKK3 1724 aaKnown RBP16.55■□□□□ 0.24
CCS-202ENST00000525435 MEGF6O75095 1541 aa16.55■□□□□ 0.24
CCS-202ENST00000525435 PCDH11XQ9BZA7 1347 aa16.54■□□□□ 0.24
CCS-202ENST00000525435 PCDH11YQ9BZA8 1340 aa16.54■□□□□ 0.24
CCS-202ENST00000525435 AEBP1Q8IUX7 1158 aa16.54■□□□□ 0.24
CCS-202ENST00000525435 DDX54Q8TDD1 881 aaKnown RBP16.54■□□□□ 0.24
CCS-202ENST00000525435 U2AF1L5P0DN76 240 aaPredicted RBP16.53■□□□□ 0.24
CCS-202ENST00000525435 U2AF1Q01081 240 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCS-202ENST00000525435 PNNQ9H307 717 aaKnown RBP16.53■□□□□ 0.24
CCS-202ENST00000525435 HMOX1P09601 288 aa16.52■□□□□ 0.24
CCS-202ENST00000525435 NKX1-1Q15270 411 aaPredicted RBP16.52■□□□□ 0.24
CCS-202ENST00000525435 FAM182BQ5T319 152 aa16.52■□□□□ 0.24
CCS-202ENST00000525435 IFNL2Q8IZJ0 200 aa16.51■□□□□ 0.23
CCS-202ENST00000525435 CYP27B1O15528 508 aa16.5■□□□□ 0.23
CCS-202ENST00000525435 HSP90AB1P08238 724 aaKnown RBP16.5■□□□□ 0.23
CCS-202ENST00000525435 BCL11BQ9C0K0 894 aaPredicted RBP16.5■□□□□ 0.23
CCS-202ENST00000525435 RGPD2P0DJD1 1756 aa16.5■□□□□ 0.23
CCS-202ENST00000525435 RGPD1P0DJD0 1748 aa16.5■□□□□ 0.23
CCS-202ENST00000525435 BRWD3Q6RI45 1802 aa16.49■□□□□ 0.23
CCS-202ENST00000525435 LRRC37A3O60309 1634 aa16.49■□□□□ 0.23
CCS-202ENST00000525435 SF3B2Q13435 895 aaKnown RBP16.49■□□□□ 0.23
CCS-202ENST00000525435 RSPH6AQ9H0K4 717 aa16.49■□□□□ 0.23
CCS-202ENST00000525435 PHKG2P15735 406 aa16.48■□□□□ 0.23
CCS-202ENST00000525435 EP400Q96L91 3159 aa16.48■□□□□ 0.23
CCS-202ENST00000525435 WNK3Q9BYP7 1800 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 TRIM37O94972 964 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 NEFMP07197 916 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 C1orf141Q5JVX7 400 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 ZNF530Q6P9A1 599 aaPredicted RBP16.47■□□□□ 0.23
CCS-202ENST00000525435 GAS2L2Q8NHY3 880 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 DCAF5Q96JK2 942 aa16.47■□□□□ 0.23
CCS-202ENST00000525435 PRKAR2BP31323 418 aa16.46■□□□□ 0.23
CCS-202ENST00000525435 AKAP4Q5JQC9 854 aa16.46■□□□□ 0.23
CCS-202ENST00000525435 WDR43Q15061 677 aaKnown RBP eCLIP16.45■□□□□ 0.22
CCS-202ENST00000525435 ERVV-2B6SEH9 535 aa16.44■□□□□ 0.22
CCS-202ENST00000525435 PLSCR1O15162 318 aa16.44■□□□□ 0.22
CCS-202ENST00000525435 BAG6P46379 1132 aa16.44■□□□□ 0.22
CCS-202ENST00000525435 MTHFSDQ2M296 383 aaKnown RBP16.44■□□□□ 0.22
CCS-202ENST00000525435 PRIM1P49642 420 aaKnown RBP16.43■□□□□ 0.22
CCS-202ENST00000525435 DIEXFQ68CQ4 756 aaKnown RBP16.43■□□□□ 0.22
CCS-202ENST00000525435 PHACTR3Q96KR7 559 aa16.43■□□□□ 0.22
CCS-202ENST00000525435 PLEKHF1Q96S99 279 aa16.43■□□□□ 0.22
CCS-202ENST00000525435 KCNQ2O43526 872 aa16.42■□□□□ 0.22
CCS-202ENST00000525435 APBA3O96018 575 aa16.42■□□□□ 0.22
CCS-202ENST00000525435 PKD1L3Q7Z443 1732 aa16.42■□□□□ 0.22
CCS-202ENST00000525435 HTATSF1O43719 755 aaKnown RBP16.41■□□□□ 0.22
CCS-202ENST00000525435 PNISRQ8TF01 805 aaKnown RBP16.41■□□□□ 0.22
CCS-202ENST00000525435 ACSBG1Q96GR2 724 aa16.41■□□□□ 0.22
CCS-202ENST00000525435 MRS2Q9HD23 443 aa16.41■□□□□ 0.22
CCS-202ENST00000525435 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
CCS-202ENST00000525435 GNAT3A8MTJ3 354 aa16.4■□□□□ 0.22
CCS-202ENST00000525435 CCER2I3L3R5 266 aa16.39■□□□□ 0.21
CCS-202ENST00000525435 HMGB2P26583 209 aaKnown RBP16.39■□□□□ 0.21
CCS-202ENST00000525435 CCDC184Q52MB2 194 aa16.39■□□□□ 0.21
CCS-202ENST00000525435 SYTL4Q96C24 671 aaPredicted RBP16.39■□□□□ 0.21
CCS-202ENST00000525435 RUNDC1Q96C34 613 aa16.39■□□□□ 0.21
CCS-202ENST00000525435 CAMKK2Q96RR4 588 aa16.39■□□□□ 0.21
CCS-202ENST00000525435 MAPK8IP3Q9UPT6 1336 aa16.39■□□□□ 0.21
CCS-202ENST00000525435 MPRIPQ6WCQ1 1025 aa16.38■□□□□ 0.21
CCS-202ENST00000525435 PTF1AQ7RTS3 328 aa16.38■□□□□ 0.21
CCS-202ENST00000525435 TMOD3Q9NYL9 352 aa16.38■□□□□ 0.21
CCS-202ENST00000525435 RNMTO43148 476 aaKnown RBP16.37■□□□□ 0.21
CCS-202ENST00000525435 CABP4P57796 275 aa16.37■□□□□ 0.21
CCS-202ENST00000525435 NFE2L2Q16236 605 aa16.37■□□□□ 0.21
CCS-202ENST00000525435 PIGBQ92521 554 aa16.37■□□□□ 0.21
CCS-202ENST00000525435 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
CCS-202ENST00000525435 EN1Q05925 392 aaPredicted RBP16.36■□□□□ 0.21
CCS-202ENST00000525435 DEFB132Q7Z7B7 95 aa16.36■□□□□ 0.21
CCS-202ENST00000525435 RTF1Q92541 710 aaKnown RBP16.36■□□□□ 0.21
CCS-202ENST00000525435 MAP3K5Q99683 1374 aa16.36■□□□□ 0.21
CCS-202ENST00000525435 SHANK3Q9BYB0 1731 aa16.36■□□□□ 0.21
CCS-202ENST00000525435 IL17REQ8NFR9 667 aa16.35■□□□□ 0.21
CCS-202ENST00000525435 LGR6Q9HBX8 967 aa16.35■□□□□ 0.21
CCS-202ENST00000525435 NFATC2IPQ8NCF5 419 aa16.34■□□□□ 0.21
CCS-202ENST00000525435 SLC52A2Q9HAB3 445 aa16.34■□□□□ 0.21
CCS-202ENST00000525435 KDM6AO15550 1401 aaPredicted RBP16.34■□□□□ 0.21
CCS-202ENST00000525435 TMPOP42166 694 aaKnown RBP16.33■□□□□ 0.2
CCS-202ENST00000525435 LMOD3Q0VAK6 560 aa16.33■□□□□ 0.2
CCS-202ENST00000525435 SLC27A3Q5K4L6 730 aa16.33■□□□□ 0.2
CCS-202ENST00000525435 CEMIPQ8WUJ3 1361 aa16.33■□□□□ 0.2
CCS-202ENST00000525435 EZH2Q15910 746 aaKnown RBP16.32■□□□□ 0.2
CCS-202ENST00000525435 TXNRD1Q16881 649 aa16.32■□□□□ 0.2
CCS-202ENST00000525435 NCBP3Q53F19 620 aaKnown RBP16.32■□□□□ 0.2
CCS-202ENST00000525435 SBF2Q86WG5 1849 aa16.32■□□□□ 0.2
CCS-202ENST00000525435 PROM2Q8N271 834 aa16.32■□□□□ 0.2
CCS-202ENST00000525435 KAT6BQ8WYB5 2073 aa16.32■□□□□ 0.2
CCS-202ENST00000525435 NHSQ6T4R5 1651 aa16.31■□□□□ 0.2
CCS-202ENST00000525435 RIPK4P57078 832 aa16.31■□□□□ 0.2
CCS-202ENST00000525435 TEFQ10587 303 aa16.31■□□□□ 0.2
CCS-202ENST00000525435 CCDC146Q8IYE0 955 aa16.31■□□□□ 0.2
CCS-202ENST00000525435 ATG3Q9NT62 314 aa16.3■□□□□ 0.2
CCS-202ENST00000525435 ASAP1Q9ULH1 1129 aa16.29■□□□□ 0.2
CCS-202ENST00000525435 APAF1O14727 1248 aa16.28■□□□□ 0.2
CCS-202ENST00000525435 TAF7Q15545 349 aaPredicted RBP16.28■□□□□ 0.2
CCS-202ENST00000525435 MIER1Q8N108 512 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms