RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293		H3BM21	787 aa		5.22	□□□□□ -1.57
CD44-216	ENST00000525293	FLII	Q13045	1269 aa		5.22	□□□□□ -1.57
CD44-216	ENST00000525293	SLFNL1	Q499Z3	407 aa		5.22	□□□□□ -1.57
CD44-216	ENST00000525293	IRF7	Q92985	503 aa		5.22	□□□□□ -1.57
CD44-216	ENST00000525293	KRTAP4-6	Q9BYQ5	205 aa		5.22	□□□□□ -1.57
CD44-216	ENST00000525293		A0A1W2PRU2	124 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	MEN1	O00255	615 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	RAD21	O60216	631 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	PPFIA3	O75145	1194 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	PTS	Q03393	145 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	SEMA3F	Q13275	785 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	FOXD4L5	Q5VV16	416 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-216	ENST00000525293	RNF135	Q8IUD6	432 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	PHTF2	Q8N3S3	785 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	RNF217	Q8TC41	542 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	OSBPL3	Q9H4L5	887 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	ERBB4	Q15303	1308 aa		5.21	□□□□□ -1.58
CD44-216	ENST00000525293	UBTF	P17480	764 aa	Known RBP	5.2	□□□□□ -1.58
CD44-216	ENST00000525293	GMPR	P36959	345 aa		5.2	□□□□□ -1.58
CD44-216	ENST00000525293	CYP2U1	Q7Z449	544 aa		5.2	□□□□□ -1.58
CD44-216	ENST00000525293	TRAK2	O60296	914 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	MYC	P01106	439 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-216	ENST00000525293	SOX11	P35716	441 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	RNF144A	P50876	292 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-216	ENST00000525293	INSM1	Q01101	510 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-216	ENST00000525293	LYSMD3	Q7Z3D4	306 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	PRICKLE2	Q7Z3G6	844 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	WWC1	Q8IX03	1113 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	NLRP3	Q96P20	1036 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	ARHGEF10L	Q9HCE6	1279 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	DOLK	Q9UPQ8	538 aa		5.19	□□□□□ -1.58
CD44-216	ENST00000525293	SLC35F4	A4IF30	521 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	RHOQ	P17081	205 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	USP4	Q13107	963 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	OXLD1	Q5BKU9	147 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	CCDC155	Q8N6L0	562 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	RAB6B	Q9NRW1	208 aa		5.18	□□□□□ -1.58
CD44-216	ENST00000525293	GNRH1	P01148	92 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	GPC1	P35052	558 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	CLN3	Q13286	438 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	SLC27A3	Q5K4L6	730 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	PLPP7	Q8NBV4	271 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	ALG2	Q9H553	416 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	CHIC2	Q9UKJ5	165 aa		5.17	□□□□□ -1.58
CD44-216	ENST00000525293	SENP3-EIF4A1	A0A087X0R7	540 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	POM121C	A8CG34	1229 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	PIK3CD	O00329	1044 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	VSIG8	P0DPA2	414 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	POU4F2	Q12837	409 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	MAP7D1	Q3KQU3	841 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	CNKSR1	Q969H4	720 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	CLUAP1	Q96AJ1	413 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	SIRT1	Q96EB6	747 aa		5.16	□□□□□ -1.58
CD44-216	ENST00000525293	STAU1	O95793	577 aa	Known RBP	5.15	□□□□□ -1.59
CD44-216	ENST00000525293	IL2RA	P01589	272 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	ITGA6	P23229	1130 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	CENPC	Q03188	943 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	VWA5B2	Q8N398	1253 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	GPR161	Q8N6U8	529 aa	Known RBP	5.15	□□□□□ -1.59
CD44-216	ENST00000525293	ESYT1	Q9BSJ8	1104 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	GRIP2	Q9C0E4	1043 aa		5.15	□□□□□ -1.59
CD44-216	ENST00000525293	CDC14C	A4D256	554 aa		5.14	□□□□□ -1.59
CD44-216	ENST00000525293	SKI	P12755	728 aa		5.14	□□□□□ -1.59
CD44-216	ENST00000525293	HDGFL1	Q5TGJ6	251 aa		5.14	□□□□□ -1.59
CD44-216	ENST00000525293	NANOS1	Q8WY41	292 aa	Known RBP	5.14	□□□□□ -1.59
CD44-216	ENST00000525293	XAGE2	Q96GT9	111 aa		5.14	□□□□□ -1.59
CD44-216	ENST00000525293	ESCO1	Q5FWF5	840 aa		5.13	□□□□□ -1.59
CD44-216	ENST00000525293	SV2A	Q7L0J3	742 aa		5.13	□□□□□ -1.59
CD44-216	ENST00000525293	ADAMTS19	Q8TE59	1207 aa		5.13	□□□□□ -1.59
CD44-216	ENST00000525293	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	5.13	□□□□□ -1.59
CD44-216	ENST00000525293	ETNK1	Q9HBU6	452 aa		5.13	□□□□□ -1.59
CD44-216	ENST00000525293	CUEDC1	Q9NWM3	386 aa	Predicted RBP	5.13	□□□□□ -1.59
CD44-216	ENST00000525293	SPATA31C2	B4DYI2	1134 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	PHKA2	P46019	1235 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	EML3	Q32P44	896 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	NBPF10	Q6P3W6	841 aa	Known RBP	5.12	□□□□□ -1.59
CD44-216	ENST00000525293	RIPOR1	Q6ZS17	1223 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	TAS1R3	Q7RTX0	852 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	PROSER2	Q86WR7	435 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-216	ENST00000525293	DEPDC4	Q8N2C3	294 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	NBPF15	Q8N660	670 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	GAS2L1	Q99501	681 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-216	ENST00000525293	COL25A1	Q9BXS0	654 aa	Predicted RBP	5.12	□□□□□ -1.59
CD44-216	ENST00000525293	DYRK1B	Q9Y463	629 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	HRH3	Q9Y5N1	445 aa		5.12	□□□□□ -1.59
CD44-216	ENST00000525293	WASL	O00401	505 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	LOR	P23490	312 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	GTF2E1	P29083	439 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	SCNN1D	P51172	638 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	GDF10	P55107	478 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	TMEM214	Q6NUQ4	689 aa	Known RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	FNBP4	Q8N3X1	1017 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	ZSCAN1	Q8NBB4	408 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	NFATC2IP	Q8NCF5	419 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	CNTNAP3B	Q96NU0	1288 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	CNTNAP3	Q9BZ76	1288 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	FHDC1	Q9C0D6	1143 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-216	ENST00000525293	TIMMDC1	Q9NPL8	285 aa		5.11	□□□□□ -1.59
CD44-216	ENST00000525293	LZTS3	O60299	673 aa	Predicted RBP	5.1	□□□□□ -1.59
CD44-216	ENST00000525293	INHA	P05111	366 aa		5.1	□□□□□ -1.59

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