RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 AMER1Q5JTC6 1135 aaPredicted RBP22.13■■□□□ 1.13
LSM1-205ENST00000523511 EYA1Q99502 592 aa22.13■■□□□ 1.13
LSM1-205ENST00000523511 TXNRD1Q16881 649 aa22.12■■□□□ 1.13
LSM1-205ENST00000523511 PTF1AQ7RTS3 328 aa22.12■■□□□ 1.13
LSM1-205ENST00000523511 PER1O15534 1290 aaPredicted RBP22.11■■□□□ 1.13
LSM1-205ENST00000523511 PRIM1P49642 420 aaKnown RBP22.11■■□□□ 1.13
LSM1-205ENST00000523511 EIF4A2Q14240 407 aaKnown RBP22.11■■□□□ 1.13
LSM1-205ENST00000523511 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.11■■□□□ 1.13
LSM1-205ENST00000523511 STK32BQ9NY57 414 aa22.09■■□□□ 1.13
LSM1-205ENST00000523511 MEGF6O75095 1541 aa22.09■■□□□ 1.13
LSM1-205ENST00000523511 CC2D1BQ5T0F9 858 aaKnown RBP22.08■■□□□ 1.13
LSM1-205ENST00000523511 PROM2Q8N271 834 aa22.08■■□□□ 1.13
LSM1-205ENST00000523511 SLC27A3Q5K4L6 730 aa22.07■■□□□ 1.12
LSM1-205ENST00000523511 PLEKHG2Q9H7P9 1386 aa22.05■■□□□ 1.12
LSM1-205ENST00000523511 IFNL2Q8IZJ0 200 aa22.05■■□□□ 1.12
LSM1-205ENST00000523511 NPC1L1Q9UHC9 1359 aa22.04■■□□□ 1.12
LSM1-205ENST00000523511 MTHFSP49914 203 aa22.04■■□□□ 1.12
LSM1-205ENST00000523511 AMOTQ4VCS5 1084 aa22.04■■□□□ 1.12
LSM1-205ENST00000523511 PLEKHO1Q53GL0 409 aaPredicted RBP22.04■■□□□ 1.12
LSM1-205ENST00000523511 IGSF1Q8N6C5 1336 aa22.03■■□□□ 1.12
LSM1-205ENST00000523511 ANKRD26Q9UPS8 1709 aa22.03■■□□□ 1.12
LSM1-205ENST00000523511 CYP27B1O15528 508 aa22.02■■□□□ 1.12
LSM1-205ENST00000523511 HSP90AB1P08238 724 aaKnown RBP22.02■■□□□ 1.12
LSM1-205ENST00000523511 NKX1-1Q15270 411 aaPredicted RBP22.02■■□□□ 1.12
LSM1-205ENST00000523511 SLC15A2Q16348 729 aa22.02■■□□□ 1.12
LSM1-205ENST00000523511 NCAPD2Q15021 1401 aa22.02■■□□□ 1.12
LSM1-205ENST00000523511 MAP2P11137 1827 aaKnown RBP22.01■■□□□ 1.11
LSM1-205ENST00000523511 SBF2Q86WG5 1849 aa22.01■■□□□ 1.11
LSM1-205ENST00000523511 RGPD3A6NKT7 1758 aaPredicted RBP22.01■■□□□ 1.11
LSM1-205ENST00000523511 RGPD4Q7Z3J3 1758 aa22.01■■□□□ 1.11
LSM1-205ENST00000523511 CNGB1Q14028 1251 aaPredicted RBP22■■□□□ 1.11
LSM1-205ENST00000523511 MPRIPQ6WCQ1 1025 aa22■■□□□ 1.11
LSM1-205ENST00000523511 SMARCC1Q92922 1105 aaPredicted RBP22■■□□□ 1.11
LSM1-205ENST00000523511 SPON1Q9HCB6 807 aa22■■□□□ 1.11
LSM1-205ENST00000523511 NHSQ6T4R5 1651 aa22■■□□□ 1.11
LSM1-205ENST00000523511 DIAPH1O60610 1272 aaKnown RBP21.98■■□□□ 1.11
LSM1-205ENST00000523511 IL13P35225 146 aa21.98■■□□□ 1.11
LSM1-205ENST00000523511 SULT6B1Q6IMI4 303 aa21.98■■□□□ 1.11
LSM1-205ENST00000523511 RREB1Q92766 1687 aa21.98■■□□□ 1.11
LSM1-205ENST00000523511 PHKG2P15735 406 aa21.97■■□□□ 1.11
LSM1-205ENST00000523511 RGPD2P0DJD1 1756 aa21.97■■□□□ 1.11
LSM1-205ENST00000523511 C1orf141Q5JVX7 400 aa21.96■■□□□ 1.11
LSM1-205ENST00000523511 CFAP53Q96M91 514 aa21.96■■□□□ 1.11
LSM1-205ENST00000523511 ANO8Q9HCE9 1232 aaPredicted RBP21.96■■□□□ 1.11
LSM1-205ENST00000523511 CCNL1Q9UK58 526 aaPredicted RBP21.96■■□□□ 1.11
LSM1-205ENST00000523511 TMOD3Q9NYL9 352 aa21.95■■□□□ 1.1
LSM1-205ENST00000523511 PPP1R1BQ9UD71 204 aaPredicted RBP21.95■■□□□ 1.1
LSM1-205ENST00000523511 DCAF5Q96JK2 942 aa21.94■■□□□ 1.1
LSM1-205ENST00000523511 NUP188Q5SRE5 1749 aa21.94■■□□□ 1.1
LSM1-205ENST00000523511 ZNF530Q6P9A1 599 aaPredicted RBP21.93■■□□□ 1.1
LSM1-205ENST00000523511 LRRC4BQ9NT99 713 aa21.93■■□□□ 1.1
LSM1-205ENST00000523511 ERVV-2B6SEH9 535 aa21.92■■□□□ 1.1
LSM1-205ENST00000523511 TFCP2L1Q9NZI6 479 aa21.92■■□□□ 1.1
LSM1-205ENST00000523511 PIGBQ92521 554 aa21.91■■□□□ 1.1
LSM1-205ENST00000523511 ZEB1P37275 1124 aaPredicted RBP21.9■■□□□ 1.1
LSM1-205ENST00000523511 NUDCQ9Y266 331 aa21.9■■□□□ 1.1
LSM1-205ENST00000523511 AEBP1Q8IUX7 1158 aa21.89■■□□□ 1.09
LSM1-205ENST00000523511 SLC16A10Q8TF71 515 aa21.89■■□□□ 1.09
LSM1-205ENST00000523511 AKT1S1Q96B36 256 aa21.89■■□□□ 1.09
LSM1-205ENST00000523511 MTFR1LQ9H019 292 aa21.89■■□□□ 1.09
LSM1-205ENST00000523511 KDRP35968 1356 aa21.88■■□□□ 1.09
LSM1-205ENST00000523511 PALLDQ8WX93 1383 aa21.88■■□□□ 1.09
LSM1-205ENST00000523511 BTAF1O14981 1849 aa21.88■■□□□ 1.09
LSM1-205ENST00000523511 U2SURPO15042 1029 aaKnown RBP21.88■■□□□ 1.09
LSM1-205ENST00000523511 LRP5O75197 1615 aa21.88■■□□□ 1.09
LSM1-205ENST00000523511 ZBTB7AO95365 584 aa21.87■■□□□ 1.09
LSM1-205ENST00000523511 CABP4P57796 275 aa21.87■■□□□ 1.09
LSM1-205ENST00000523511 KAT6BQ8WYB5 2073 aa21.87■■□□□ 1.09
LSM1-205ENST00000523511 HMOX1P09601 288 aa21.86■■□□□ 1.09
LSM1-205ENST00000523511 AKAP4Q5JQC9 854 aa21.86■■□□□ 1.09
LSM1-205ENST00000523511 FLAD1Q8NFF5 587 aa21.86■■□□□ 1.09
LSM1-205ENST00000523511 DCAF8L1A6NGE4 600 aa21.85■■□□□ 1.09
LSM1-205ENST00000523511 KCNQ4P56696 695 aa21.85■■□□□ 1.09
LSM1-205ENST00000523511 PKD1L3Q7Z443 1732 aa21.85■■□□□ 1.09
LSM1-205ENST00000523511 DOT1LQ8TEK3 1739 aa21.85■■□□□ 1.09
LSM1-205ENST00000523511 SHANK3Q9BYB0 1731 aa21.84■■□□□ 1.09
LSM1-205ENST00000523511 ZNF827Q17R98 1081 aa21.84■■□□□ 1.09
LSM1-205ENST00000523511 ATF5Q9Y2D1 282 aaPredicted RBP21.84■■□□□ 1.09
LSM1-205ENST00000523511 MSH5O43196 834 aa21.83■■□□□ 1.09
LSM1-205ENST00000523511 SRCAPQ6ZRS2 3230 aa21.83■■□□□ 1.08
LSM1-205ENST00000523511 LOC102724428A0A0B4J2F2 783 aa21.82■■□□□ 1.08
LSM1-205ENST00000523511 PPP2R1AP30153 589 aa21.82■■□□□ 1.08
LSM1-205ENST00000523511 SIK1P57059 783 aa21.82■■□□□ 1.08
LSM1-205ENST00000523511 POLD1P28340 1107 aa21.81■■□□□ 1.08
LSM1-205ENST00000523511 AK7Q96M32 723 aa21.81■■□□□ 1.08
LSM1-205ENST00000523511 PDGFDQ9GZP0 370 aaPredicted RBP21.81■■□□□ 1.08
LSM1-205ENST00000523511 ASAP1Q9ULH1 1129 aa21.81■■□□□ 1.08
LSM1-205ENST00000523511 ATP6V1AP38606 617 aa21.8■■□□□ 1.08
LSM1-205ENST00000523511 ATG3Q9NT62 314 aa21.8■■□□□ 1.08
LSM1-205ENST00000523511 NFATC2IPQ8NCF5 419 aa21.79■■□□□ 1.08
LSM1-205ENST00000523511 GAS2L2Q8NHY3 880 aa21.79■■□□□ 1.08
LSM1-205ENST00000523511 RBM42Q9BTD8 480 aaKnown RBP21.78■■□□□ 1.08
LSM1-205ENST00000523511 PNPLA7Q6ZV29 1317 aa21.78■■□□□ 1.08
LSM1-205ENST00000523511 NEFMP07197 916 aa21.77■■□□□ 1.08
LSM1-205ENST00000523511 MTHFSDQ2M296 383 aaKnown RBP21.77■■□□□ 1.08
LSM1-205ENST00000523511 U2AF1L5P0DN76 240 aaPredicted RBP21.76■■□□□ 1.07
LSM1-205ENST00000523511 U2AF1Q01081 240 aaKnown RBP eCLIP21.76■■□□□ 1.07
LSM1-205ENST00000523511 ARXQ96QS3 562 aa21.76■■□□□ 1.07
LSM1-205ENST00000523511 PTGER2P43116 358 aa21.75■■□□□ 1.07
LSM1-205ENST00000523511 RALBP1Q15311 655 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms