RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, human

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-208	ENST00000520561	MTHFSD	Q2M296	383 aa	Known RBP	11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	WWC1	Q8IX03	1113 aa		11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	DLG5	Q8TDM6	1919 aa		11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	ZNF521	Q96K83	1311 aa		11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	MAP3K5	Q99683	1374 aa		11.73	□□□□□ -0.53
CSMD1-208	ENST00000520561	CALD1	Q05682	793 aa	Known RBP	11.72	□□□□□ -0.53
CSMD1-208	ENST00000520561	GOLGA2	Q08379	1002 aa		11.72	□□□□□ -0.53
CSMD1-208	ENST00000520561	RTF1	Q92541	710 aa	Known RBP	11.72	□□□□□ -0.53
CSMD1-208	ENST00000520561	PHF23	Q9BUL5	403 aa	Predicted RBP	11.72	□□□□□ -0.53
CSMD1-208	ENST00000520561	IL2RB	P14784	551 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	C1orf141	Q5JVX7	400 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	UNC5CL	Q8IV45	518 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	WDR63	Q8IWG1	891 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	USP35	Q9P2H5	1018 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	SPG7	Q9UQ90	795 aa		11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	CCDC9	Q9Y3X0	531 aa	Known RBP	11.71	□□□□□ -0.53
CSMD1-208	ENST00000520561	LRRC37A3	O60309	1634 aa		11.71	□□□□□ -0.54
CSMD1-208	ENST00000520561	BCL9L	Q86UU0	1499 aa		11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561		E9PSI1	815 aa		11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	HTATSF1	O43719	755 aa	Known RBP	11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	USP21	Q9UK80	565 aa		11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	TRIM35	Q9UPQ4	493 aa		11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	THRAP3	Q9Y2W1	955 aa	Known RBP	11.7	□□□□□ -0.54
CSMD1-208	ENST00000520561	DISP2	A7MBM2	1401 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	AFF2	P51816	1311 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	IL16	Q14005	1332 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	SPATA31A1	Q5TZJ5	1347 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	SPATA31A5	Q5VU36	1347 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	SPATA31A7	Q8IWB4	1347 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	GNAT3	A8MTJ3	354 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	AKAP4	Q5JQC9	854 aa		11.69	□□□□□ -0.54
CSMD1-208	ENST00000520561	PCDH11X	Q9BZA7	1347 aa		11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	PCDH11Y	Q9BZA8	1340 aa		11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	VPS72	Q15906	364 aa		11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	MYH16	Q9H6N6	1097 aa		11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	TNS2	Q63HR2	1409 aa		11.68	□□□□□ -0.54
CSMD1-208	ENST00000520561	SHANK3	Q9BYB0	1731 aa		11.67	□□□□□ -0.54
CSMD1-208	ENST00000520561	SLFN5	Q08AF3	891 aa		11.67	□□□□□ -0.54
CSMD1-208	ENST00000520561	ZCRB1	Q8TBF4	217 aa	Known RBP	11.67	□□□□□ -0.54
CSMD1-208	ENST00000520561	CDCA7L	Q96GN5	454 aa		11.67	□□□□□ -0.54
CSMD1-208	ENST00000520561	HSP90AB1	P08238	724 aa	Known RBP	11.66	□□□□□ -0.54
CSMD1-208	ENST00000520561	MCM10	Q7L590	875 aa		11.66	□□□□□ -0.54
CSMD1-208	ENST00000520561	IFNL2	Q8IZJ0	200 aa		11.66	□□□□□ -0.54
CSMD1-208	ENST00000520561	THUMPD2	Q9BTF0	503 aa	Known RBP	11.66	□□□□□ -0.54
CSMD1-208	ENST00000520561	ATRN	O75882	1429 aa		11.66	□□□□□ -0.54
CSMD1-208	ENST00000520561	ADAMTS7	Q9UKP4	1686 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	PHKG2	P15735	406 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	GNAI1	P63096	354 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	DCTN1	Q14203	1278 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	BARGIN	Q6ZT62	677 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	IFT57	Q9NWB7	429 aa		11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	TRPC5	Q9UL62	973 aa	Predicted RBP	11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	LAS1L	Q9Y4W2	734 aa	Known RBP	11.65	□□□□□ -0.54
CSMD1-208	ENST00000520561	FANCI	Q9NVI1	1328 aa		11.64	□□□□□ -0.55
CSMD1-208	ENST00000520561	GLI3	P10071	1580 aa		11.64	□□□□□ -0.55
CSMD1-208	ENST00000520561	DUSP27	Q5VZP5	1158 aa		11.64	□□□□□ -0.55
CSMD1-208	ENST00000520561	CEMIP	Q8WUJ3	1361 aa		11.64	□□□□□ -0.55
CSMD1-208	ENST00000520561	MRC1	P22897	1456 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	VIRMA	Q69YN4	1812 aa	Known RBP	11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	KDM6A	O15550	1401 aa	Predicted RBP	11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	EXOC5	O00471	708 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	TEF	Q10587	303 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	MPRIP	Q6WCQ1	1025 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	CFAP44	Q96MT7	982 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	SCN11A	Q9UI33	1791 aa		11.63	□□□□□ -0.55
CSMD1-208	ENST00000520561	THSD7A	Q9UPZ6	1657 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561		A0A0G2JS52	829 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	CYP27B1	O15528	508 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	RNMT	O43148	476 aa	Known RBP	11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	MYT1	Q01538	1121 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	DDB1	Q16531	1140 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	FAM98C	Q17RN3	349 aa	Known RBP	11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	ZNF772	Q68DY9	489 aa	Predicted RBP	11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	TRMT2A	Q8IZ69	625 aa	Known RBP	11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	IL17RE	Q8NFR9	667 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	DDX54	Q8TDD1	881 aa	Known RBP	11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	DCAF5	Q96JK2	942 aa		11.62	□□□□□ -0.55
CSMD1-208	ENST00000520561	ZNF853	P0CG23	659 aa		11.61	□□□□□ -0.55
CSMD1-208	ENST00000520561	TSR2	Q969E8	191 aa	Known RBP	11.61	□□□□□ -0.55
CSMD1-208	ENST00000520561	GJD4	Q96KN9	370 aa	Predicted RBP	11.61	□□□□□ -0.55
CSMD1-208	ENST00000520561	TSPYL4	Q9UJ04	414 aa		11.61	□□□□□ -0.55
CSMD1-208	ENST00000520561	SIPA1L3	O60292	1781 aa	Predicted RBP	11.6	□□□□□ -0.55
CSMD1-208	ENST00000520561	KDM3B	Q7LBC6	1761 aa		11.6	□□□□□ -0.55
CSMD1-208	ENST00000520561	MBIP	Q9NS73	344 aa		11.6	□□□□□ -0.55
CSMD1-208	ENST00000520561	BABAM1	Q9NWV8	329 aa		11.6	□□□□□ -0.55
CSMD1-208	ENST00000520561	NKX1-1	Q15270	411 aa	Predicted RBP	11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	TAF7	Q15545	349 aa	Predicted RBP	11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	QTRT2	Q9H974	415 aa	Known RBP	11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	SLC52A2	Q9HAB3	445 aa		11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	LGR6	Q9HBX8	967 aa		11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	TOGARAM1	Q9Y4F4	1720 aa		11.59	□□□□□ -0.55
CSMD1-208	ENST00000520561	DOT1L	Q8TEK3	1739 aa		11.58	□□□□□ -0.56
CSMD1-208	ENST00000520561	CHL1	O00533	1208 aa		11.58	□□□□□ -0.56
CSMD1-208	ENST00000520561	CT47B1	P0C2W7	299 aa	Predicted RBP	11.58	□□□□□ -0.56

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