RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SYCE3A1L190 88 aa14.02□□□□□ -0.17
SYNPO-204ENST00000519664 RBM10P98175 930 aaKnown RBP14.02□□□□□ -0.17
SYNPO-204ENST00000519664 TRIM29Q14134 588 aa14.02□□□□□ -0.17
SYNPO-204ENST00000519664 CWC22Q9HCG8 908 aaKnown RBP14.02□□□□□ -0.17
SYNPO-204ENST00000519664 ACEP12821 1306 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 ASXL1Q8IXJ9 1541 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 FLIIQ13045 1269 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 ESPNB1AK53 854 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 LARP1BQ659C4 914 aaKnown RBP14.01□□□□□ -0.17
SYNPO-204ENST00000519664 TRIM5Q9C035 493 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 TNNT3P45378 269 aaPredicted RBP14.01□□□□□ -0.17
SYNPO-204ENST00000519664 BOLA2Q9H3K6 86 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 DISP1Q96F81 1524 aa14.01□□□□□ -0.17
SYNPO-204ENST00000519664 RAD21O60216 631 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 TSPY26PQ9H489 355 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 CABP4P57796 275 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 FKBP4Q02790 459 aaKnown RBP eCLIP14□□□□□ -0.17
SYNPO-204ENST00000519664 TPD52L1Q16890 204 aaPredicted RBP14□□□□□ -0.17
SYNPO-204ENST00000519664 TOM1L2Q6ZVM7 507 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 CCDC8Q9H0W5 538 aaPredicted RBP14□□□□□ -0.17
SYNPO-204ENST00000519664 CIZ1Q9ULV3 898 aaPredicted RBP14□□□□□ -0.17
SYNPO-204ENST00000519664 CASTP20810 708 aaKnown RBP14□□□□□ -0.17
SYNPO-204ENST00000519664 ANKLE2Q86XL3 938 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 JARID2Q92833 1246 aaPredicted RBP14□□□□□ -0.17
SYNPO-204ENST00000519664 SPG7Q9UQ90 795 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 KIAA0556O60303 1618 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 BMP2KLQ5H9B9 411 aa14□□□□□ -0.17
SYNPO-204ENST00000519664 DDX11Q96FC9 970 aa13.99□□□□□ -0.17
SYNPO-204ENST00000519664 RRP12Q5JTH9 1297 aaKnown RBP13.98□□□□□ -0.17
SYNPO-204ENST00000519664 HOMER1Q86YM7 354 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 WDR33Q9C0J8 1336 aaKnown RBP13.98□□□□□ -0.17
SYNPO-204ENST00000519664 G3V3G9 751 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 PRPF40BQ6NWY9 871 aaKnown RBP13.98□□□□□ -0.17
SYNPO-204ENST00000519664 CCDC83Q8IWF9 413 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 PPFIA3O75145 1194 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 BLOC1S2Q6QNY1 142 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 ERC1Q8IUD2 1116 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 A2MP01023 1474 aa13.98□□□□□ -0.17
SYNPO-204ENST00000519664 MARCH6O60337 910 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PRDM11Q9NQV5 511 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PI4KAP2A4QPH2 592 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 NUCB1Q02818 461 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PI4KAP1Q8N8J0 262 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PDRG1Q9NUG6 133 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 KIF1BPQ96EK5 621 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 ANKRD36BQ8N2N9 1353 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PDCP20941 246 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 PDE4CQ08493 712 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 HDAC1Q13547 482 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-204ENST00000519664 CHMP4CQ96CF2 233 aa13.97□□□□□ -0.17
SYNPO-204ENST00000519664 VAMP4O75379 141 aa13.96□□□□□ -0.17
SYNPO-204ENST00000519664 CCDC173Q0VFZ6 552 aa13.96□□□□□ -0.17
SYNPO-204ENST00000519664 PANK2Q9BZ23 570 aa13.96□□□□□ -0.17
SYNPO-204ENST00000519664 SDSP20132 328 aa13.96□□□□□ -0.17
SYNPO-204ENST00000519664 VPS53Q5VIR6 699 aa13.96□□□□□ -0.17
SYNPO-204ENST00000519664 POLR3AO14802 1390 aaPredicted RBP13.96□□□□□ -0.18
SYNPO-204ENST00000519664 CCDC39Q9UFE4 941 aa13.96□□□□□ -0.18
SYNPO-204ENST00000519664 PHF8Q9UPP1 1060 aa13.96□□□□□ -0.18
SYNPO-204ENST00000519664 ADAMTS12P58397 1594 aa13.96□□□□□ -0.18
SYNPO-204ENST00000519664 SPATA31E1Q6ZUB1 1445 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 ASXL2Q76L83 1435 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 CFAP65Q6ZU64 1925 aaKnown RBP13.95□□□□□ -0.18
SYNPO-204ENST00000519664 DENND4BO75064 1496 aaPredicted RBP13.95□□□□□ -0.18
SYNPO-204ENST00000519664 CAMK4Q16566 473 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 PPP1R42Q7Z4L9 355 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 DNAAF4Q8WXU2 420 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 CNNM1Q9NRU3 951 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 DUOX2Q9NRD8 1548 aa13.95□□□□□ -0.18
SYNPO-204ENST00000519664 DHX16O60231 1041 aaKnown RBP13.94□□□□□ -0.18
SYNPO-204ENST00000519664 KINO60870 393 aaKnown RBP13.94□□□□□ -0.18
SYNPO-204ENST00000519664 EIF4A2Q14240 407 aaKnown RBP13.94□□□□□ -0.18
SYNPO-204ENST00000519664 KDM6BO15054 1643 aa13.94□□□□□ -0.18
SYNPO-204ENST00000519664 KAT6BQ8WYB5 2073 aa13.94□□□□□ -0.18
SYNPO-204ENST00000519664 MRPL50Q8N5N7 158 aaKnown RBP13.93□□□□□ -0.18
SYNPO-204ENST00000519664 ZBTB40Q9NUA8 1239 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 RBM27Q9P2N5 1060 aaKnown RBP13.93□□□□□ -0.18
SYNPO-204ENST00000519664 ERICH2A1L162 156 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 ME1P48163 572 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 KRT85P78386 507 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 A0A1W2PP64 1363 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 HIP1O00291 1037 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 GLRX3O76003 335 aaKnown RBP13.93□□□□□ -0.18
SYNPO-204ENST00000519664 TTC22Q5TAA0 569 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 MYD88Q99836 296 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 PDCL3Q9H2J4 239 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 RNF123Q5XPI4 1314 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 TCEANC2Q96MN5 208 aa13.93□□□□□ -0.18
SYNPO-204ENST00000519664 NSD2O96028 1365 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 IL16Q14005 1332 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 TPM3P06753 285 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 DNMT1P26358 1616 aaKnown RBP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 COL17A1Q9UMD9 1497 aaPredicted RBP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 TTC21BQ7Z4L5 1316 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 ATP5J2-PTCD1G3V325 749 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 BAG4O95429 457 aaKnown RBP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 PIP4K2AP48426 406 aaPredicted RBP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 SAFBQ15424 915 aaKnown RBP eCLIP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 ZNF771Q7L3S4 317 aaPredicted RBP13.92□□□□□ -0.18
SYNPO-204ENST00000519664 TNMDQ9H2S6 317 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms