RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 CNKSR2Q8WXI2 1034 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 API5Q9BZZ5 524 aaKnown RBP10.36□□□□□ -0.75
CPNE4-211ENST00000514439 KIAA0232Q92628 1395 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 ADGRL3Q9HAR2 1447 aa10.36□□□□□ -0.75
CPNE4-211ENST00000514439 SLC4A3P48751 1232 aa10.35□□□□□ -0.75
CPNE4-211ENST00000514439 HAP1P54257 671 aaPredicted RBP10.35□□□□□ -0.75
CPNE4-211ENST00000514439 RTF1Q92541 710 aaKnown RBP10.35□□□□□ -0.75
CPNE4-211ENST00000514439 C1orf115Q9H7X2 142 aa10.35□□□□□ -0.75
CPNE4-211ENST00000514439 NUCB1Q02818 461 aa10.34□□□□□ -0.75
CPNE4-211ENST00000514439 C14orf37Q86TY3 774 aa10.34□□□□□ -0.75
CPNE4-211ENST00000514439 GAS2L2Q8NHY3 880 aa10.34□□□□□ -0.75
CPNE4-211ENST00000514439 DAXXQ9UER7 740 aaPredicted RBP10.34□□□□□ -0.75
CPNE4-211ENST00000514439 NWD1Q149M9 1564 aa10.34□□□□□ -0.75
CPNE4-211ENST00000514439 NPHP4O75161 1426 aaPredicted RBP10.34□□□□□ -0.75
CPNE4-211ENST00000514439 RGS12O14924 1447 aa10.33□□□□□ -0.76
CPNE4-211ENST00000514439 MIS18AQ9NYP9 233 aa10.33□□□□□ -0.76
CPNE4-211ENST00000514439 RTL1A6NKG5 1358 aa10.33□□□□□ -0.76
CPNE4-211ENST00000514439 TSPYL4Q9UJ04 414 aa10.33□□□□□ -0.76
CPNE4-211ENST00000514439 SETD1BQ9UPS6 1966 aaKnown RBP10.32□□□□□ -0.76
CPNE4-211ENST00000514439 ESCO1Q5FWF5 840 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 RTL5Q5HYW3 569 aaPredicted RBP10.32□□□□□ -0.76
CPNE4-211ENST00000514439 CHD1LQ86WJ1 897 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 LTV1Q96GA3 475 aaPredicted RBP10.32□□□□□ -0.76
CPNE4-211ENST00000514439 LNPKQ9C0E8 428 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 UPF2Q9HAU5 1272 aaKnown RBP10.32□□□□□ -0.76
CPNE4-211ENST00000514439 INTS3Q68E01 1043 aaKnown RBP10.32□□□□□ -0.76
CPNE4-211ENST00000514439 SIRT2Q8IXJ6 389 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 GCC1Q96CN9 775 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 TBC1D32Q96NH3 1257 aa10.32□□□□□ -0.76
CPNE4-211ENST00000514439 LRRC37A3O60309 1634 aa10.31□□□□□ -0.76
CPNE4-211ENST00000514439 NFAT5O94916 1531 aa10.31□□□□□ -0.76
CPNE4-211ENST00000514439 PTPRCP08575 1304 aa10.31□□□□□ -0.76
CPNE4-211ENST00000514439 HTATSF1O43719 755 aaKnown RBP10.3□□□□□ -0.76
CPNE4-211ENST00000514439 PSME1Q06323 249 aa10.3□□□□□ -0.76
CPNE4-211ENST00000514439 GNAT3A8MTJ3 354 aa10.3□□□□□ -0.76
CPNE4-211ENST00000514439 ANKRD45Q5TZF3 282 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 USHBP1Q8N6Y0 703 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 IP6K1Q92551 441 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 MSH6P52701 1360 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 MAP3K5Q99683 1374 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 LTN1O94822 1766 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 SLC4A2P04920 1241 aa10.29□□□□□ -0.76
CPNE4-211ENST00000514439 HOXD11P31277 338 aaPredicted RBP10.28□□□□□ -0.76
CPNE4-211ENST00000514439 ORAI2Q96SN7 254 aa10.28□□□□□ -0.76
CPNE4-211ENST00000514439 ATP10DQ9P241 1426 aa10.28□□□□□ -0.76
CPNE4-211ENST00000514439 MFAP1P55081 439 aaKnown RBP10.28□□□□□ -0.76
CPNE4-211ENST00000514439 KCNH5Q8NCM2 988 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 IL17REQ8NFR9 667 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 USP35Q9P2H5 1018 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 ZBTB7CA1YPR0 619 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 XPCQ01831 940 aaPredicted RBP10.27□□□□□ -0.77
CPNE4-211ENST00000514439 BECN1Q14457 450 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 BMP2KLQ5H9B9 411 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 G2E3Q7L622 706 aa10.27□□□□□ -0.77
CPNE4-211ENST00000514439 DEKP35659 375 aaKnown RBP10.26□□□□□ -0.77
CPNE4-211ENST00000514439 NBPF6Q5VWK0 638 aa10.26□□□□□ -0.77
CPNE4-211ENST00000514439 ANKRD44Q8N8A2 993 aa10.26□□□□□ -0.77
CPNE4-211ENST00000514439 NBPF4Q96M43 638 aa10.26□□□□□ -0.77
CPNE4-211ENST00000514439 MEIS3Q99687 375 aa10.26□□□□□ -0.77
CPNE4-211ENST00000514439 C22orf23Q9BZE7 217 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 F6X3S4 739 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 TAF7Q15545 349 aaPredicted RBP10.25□□□□□ -0.77
CPNE4-211ENST00000514439 CEP85Q6P2H3 762 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 PROSER2Q86WR7 435 aaPredicted RBP10.25□□□□□ -0.77
CPNE4-211ENST00000514439 STK31Q9BXU1 1019 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 DCTPP1Q9H773 170 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 PHRF1Q9P1Y6 1649 aaKnown RBP10.25□□□□□ -0.77
CPNE4-211ENST00000514439 SLIT3O75094 1523 aa10.25□□□□□ -0.77
CPNE4-211ENST00000514439 GCP02774 474 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 NFKBIBQ15653 356 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 RPAP2Q8IXW5 612 aaPredicted RBP10.24□□□□□ -0.77
CPNE4-211ENST00000514439 BABAM1Q9NWV8 329 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 CEMIPQ8WUJ3 1361 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 FAM208AQ9UK61 1670 aaKnown RBP10.24□□□□□ -0.77
CPNE4-211ENST00000514439 CCT4P50991 539 aaKnown RBP10.24□□□□□ -0.77
CPNE4-211ENST00000514439 CCDC30Q5VVM6 783 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 SLC4A10Q6U841 1118 aa10.24□□□□□ -0.77
CPNE4-211ENST00000514439 LRRC59Q96AG4 307 aaKnown RBP10.24□□□□□ -0.77
CPNE4-211ENST00000514439 RNF216Q9NWF9 866 aaPredicted RBP10.24□□□□□ -0.77
CPNE4-211ENST00000514439 PLEKHG5O94827 1062 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 FLIIQ13045 1269 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 LMOD2Q6P5Q4 547 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 ARHGEF25Q86VW2 580 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 TBC1D2Q9BYX2 928 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 SOS1Q07889 1333 aaPredicted RBP10.23□□□□□ -0.77
CPNE4-211ENST00000514439 C1orf167Q5SNV9 1468 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 NECTIN2Q92692 538 aa10.23□□□□□ -0.77
CPNE4-211ENST00000514439 MED1Q15648 1581 aaPredicted RBP10.22□□□□□ -0.77
CPNE4-211ENST00000514439 TRPM3Q9HCF6 1732 aaPredicted RBP10.22□□□□□ -0.77
CPNE4-211ENST00000514439 FKBP5Q13451 457 aaPredicted RBP10.22□□□□□ -0.77
CPNE4-211ENST00000514439 KRT28Q7Z3Y7 464 aa10.22□□□□□ -0.77
CPNE4-211ENST00000514439 PLEKHM2Q8IWE5 1019 aa10.22□□□□□ -0.77
CPNE4-211ENST00000514439 C19orf44Q9H6X5 657 aa10.22□□□□□ -0.77
CPNE4-211ENST00000514439 SLKQ9H2G2 1235 aaPredicted RBP10.21□□□□□ -0.77
CPNE4-211ENST00000514439 LGR6Q9HBX8 967 aa10.21□□□□□ -0.77
CPNE4-211ENST00000514439 NCAPD2Q15021 1401 aa10.21□□□□□ -0.77
CPNE4-211ENST00000514439 RGPD2P0DJD1 1756 aa10.21□□□□□ -0.77
CPNE4-211ENST00000514439 KIF1AQ12756 1690 aa10.21□□□□□ -0.78
CPNE4-211ENST00000514439 GSPT1P15170 499 aaKnown RBP10.21□□□□□ -0.78
CPNE4-211ENST00000514439 ZNF530Q6P9A1 599 aaPredicted RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms