RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 TSPYL6Q8N831 410 aa19.15■□□□□ 0.66
VCAN-211ENST00000513984 NCAPD2Q15021 1401 aa19.15■□□□□ 0.66
VCAN-211ENST00000513984 IPO8O15397 1037 aaKnown RBP19.14■□□□□ 0.65
VCAN-211ENST00000513984 HTATSF1O43719 755 aaKnown RBP19.14■□□□□ 0.65
VCAN-211ENST00000513984 LTV1Q96GA3 475 aaPredicted RBP19.14■□□□□ 0.65
VCAN-211ENST00000513984 NOB1Q9ULX3 412 aaKnown RBP19.14■□□□□ 0.65
VCAN-211ENST00000513984 TWISTNBQ3B726 338 aaPredicted RBP19.14■□□□□ 0.65
VCAN-211ENST00000513984 VIRMAQ69YN4 1812 aaKnown RBP19.13■□□□□ 0.65
VCAN-211ENST00000513984 PXDNQ92626 1479 aa19.13■□□□□ 0.65
VCAN-211ENST00000513984 KIAA0232Q92628 1395 aa19.13■□□□□ 0.65
VCAN-211ENST00000513984 C8orf58Q8NAV2 365 aa19.12■□□□□ 0.65
VCAN-211ENST00000513984 RTF1Q92541 710 aaKnown RBP19.12■□□□□ 0.65
VCAN-211ENST00000513984 NPHP3Q7Z494 1330 aa19.12■□□□□ 0.65
VCAN-211ENST00000513984 LMO7Q8WWI1 1683 aa19.12■□□□□ 0.65
VCAN-211ENST00000513984 MRPL50Q8N5N7 158 aaKnown RBP19.11■□□□□ 0.65
VCAN-211ENST00000513984 TNS3Q68CZ2 1445 aa19.11■□□□□ 0.65
VCAN-211ENST00000513984 LMOD2Q6P5Q4 547 aa19.11■□□□□ 0.65
VCAN-211ENST00000513984 COL18A1P39060 1754 aa19.1■□□□□ 0.65
VCAN-211ENST00000513984 MAP3K5Q99683 1374 aa19.1■□□□□ 0.65
VCAN-211ENST00000513984 ARHGAP45Q92619 1136 aa19.1■□□□□ 0.65
VCAN-211ENST00000513984 ABCC6O95255 1503 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 HAP1P54257 671 aaPredicted RBP19.09■□□□□ 0.65
VCAN-211ENST00000513984 NBPF6Q5VWK0 638 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 NBPF4Q96M43 638 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 DDX19BQ9UMR2 479 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 GNAT3A8MTJ3 354 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 IGHDP01880 384 aa19.09■□□□□ 0.65
VCAN-211ENST00000513984 CACNA1FO60840 1977 aa19.08■□□□□ 0.65
VCAN-211ENST00000513984 FAM208AQ9UK61 1670 aaKnown RBP19.08■□□□□ 0.65
VCAN-211ENST00000513984 ELL2O00472 640 aaPredicted RBP19.08■□□□□ 0.64
VCAN-211ENST00000513984 USHBP1Q8N6Y0 703 aa19.08■□□□□ 0.64
VCAN-211ENST00000513984 ZBTB7CA1YPR0 619 aa19.07■□□□□ 0.64
VCAN-211ENST00000513984 TMEM57Q8N5G2 664 aa19.07■□□□□ 0.64
VCAN-211ENST00000513984 PCDHB15Q9Y5E8 787 aa19.07■□□□□ 0.64
VCAN-211ENST00000513984 ZNF335Q9H4Z2 1342 aaPredicted RBP19.07■□□□□ 0.64
VCAN-211ENST00000513984 ITPRIPQ8IWB1 547 aa19.06■□□□□ 0.64
VCAN-211ENST00000513984 DDX17Q92841 729 aaKnown RBP19.06■□□□□ 0.64
VCAN-211ENST00000513984 SKAP1Q86WV1 359 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 ANKRD24Q8TF21 1146 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 KDM3BQ7LBC6 1761 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 ABCC4O15439 1325 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 SPATA31A3Q5VYP0 1347 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 LRRC59Q96AG4 307 aaKnown RBP19.04■□□□□ 0.64
VCAN-211ENST00000513984 TSPYL4Q9UJ04 414 aa19.04■□□□□ 0.64
VCAN-211ENST00000513984 KRT24Q2M2I5 525 aa19.03■□□□□ 0.64
VCAN-211ENST00000513984 BRINP3Q76B58 766 aa19.03■□□□□ 0.64
VCAN-211ENST00000513984 BABAM1Q9NWV8 329 aa19.03■□□□□ 0.64
VCAN-211ENST00000513984 CEMIPQ8WUJ3 1361 aa19.03■□□□□ 0.64
VCAN-211ENST00000513984 IL17REQ8NFR9 667 aa19.02■□□□□ 0.64
VCAN-211ENST00000513984 AXIN2Q9Y2T1 843 aa19.02■□□□□ 0.64
VCAN-211ENST00000513984 ERBB3P21860 1342 aa19.02■□□□□ 0.64
VCAN-211ENST00000513984 ZBTB40Q9NUA8 1239 aa19.02■□□□□ 0.63
VCAN-211ENST00000513984 PLEKHG5O94827 1062 aa19.01■□□□□ 0.63
VCAN-211ENST00000513984 API5Q9BZZ5 524 aaKnown RBP19.01■□□□□ 0.63
VCAN-211ENST00000513984 RWDD1Q9H446 243 aaPredicted RBP19.01■□□□□ 0.63
VCAN-211ENST00000513984 NHSL1Q5SYE7 1610 aa19■□□□□ 0.63
VCAN-211ENST00000513984 ABCA3Q99758 1704 aa19■□□□□ 0.63
VCAN-211ENST00000513984 ADAMTS7Q9UKP4 1686 aa19■□□□□ 0.63
VCAN-211ENST00000513984 ZC3H6P61129 1189 aaKnown RBP19■□□□□ 0.63
VCAN-211ENST00000513984 MIS18AQ9NYP9 233 aa19■□□□□ 0.63
VCAN-211ENST00000513984 SIPA1L3O60292 1781 aaPredicted RBP18.99■□□□□ 0.63
VCAN-211ENST00000513984 OVOS2A0A0G2JMS6 1433 aa18.99■□□□□ 0.63
VCAN-211ENST00000513984 PDE4AP27815 886 aa18.99■□□□□ 0.63
VCAN-211ENST00000513984 AMOTQ4VCS5 1084 aa18.99■□□□□ 0.63
VCAN-211ENST00000513984 BACH2Q9BYV9 841 aa18.99■□□□□ 0.63
VCAN-211ENST00000513984 CPDO75976 1380 aa18.99■□□□□ 0.63
VCAN-211ENST00000513984 SOS1Q07889 1333 aaPredicted RBP18.98■□□□□ 0.63
VCAN-211ENST00000513984 RGS12O14924 1447 aa18.98■□□□□ 0.63
VCAN-211ENST00000513984 HDAC1Q13547 482 aaPredicted RBP18.98■□□□□ 0.63
VCAN-211ENST00000513984 PLEKHO1Q53GL0 409 aaPredicted RBP18.98■□□□□ 0.63
VCAN-211ENST00000513984 CHMP4BQ9H444 224 aaKnown RBP18.98■□□□□ 0.63
VCAN-211ENST00000513984 TAF7Q15545 349 aaPredicted RBP18.97■□□□□ 0.63
VCAN-211ENST00000513984 AKAP4Q5JQC9 854 aa18.97■□□□□ 0.63
VCAN-211ENST00000513984 SLAIN2Q9P270 581 aa18.97■□□□□ 0.63
VCAN-211ENST00000513984 SOS2Q07890 1332 aaPredicted RBP18.97■□□□□ 0.63
VCAN-211ENST00000513984 PTPRCP08575 1304 aa18.96■□□□□ 0.63
VCAN-211ENST00000513984 N4BP2Q86UW6 1770 aaPredicted RBP18.96■□□□□ 0.63
VCAN-211ENST00000513984 PLEKHG2Q9H7P9 1386 aa18.96■□□□□ 0.62
VCAN-211ENST00000513984 ZBTB7BO15156 539 aaPredicted RBP18.95■□□□□ 0.62
VCAN-211ENST00000513984 ZNF530Q6P9A1 599 aaPredicted RBP18.95■□□□□ 0.62
VCAN-211ENST00000513984 SCN11AQ9UI33 1791 aa18.95■□□□□ 0.62
VCAN-211ENST00000513984 PKD1L3Q7Z443 1732 aa18.94■□□□□ 0.62
VCAN-211ENST00000513984 RGS3P49796 1198 aa18.94■□□□□ 0.62
VCAN-211ENST00000513984 CABLES1Q8TDN4 633 aa18.94■□□□□ 0.62
VCAN-211ENST00000513984 INTS3Q68E01 1043 aaKnown RBP18.93■□□□□ 0.62
VCAN-211ENST00000513984 C1orf141Q5JVX7 400 aa18.91■□□□□ 0.62
VCAN-211ENST00000513984 LGR6Q9HBX8 967 aa18.91■□□□□ 0.62
VCAN-211ENST00000513984 PDZRN3Q9UPQ7 1066 aa18.91■□□□□ 0.62
VCAN-211ENST00000513984 SLC4A2P04920 1241 aa18.9■□□□□ 0.62
VCAN-211ENST00000513984 FAM161AQ3B820 660 aa18.9■□□□□ 0.62
VCAN-211ENST00000513984 SMC5Q8IY18 1101 aa18.9■□□□□ 0.62
VCAN-211ENST00000513984 RNMTO43148 476 aaKnown RBP18.89■□□□□ 0.61
VCAN-211ENST00000513984 CCDC30Q5VVM6 783 aa18.89■□□□□ 0.61
VCAN-211ENST00000513984 MEGF6O75095 1541 aa18.89■□□□□ 0.61
VCAN-211ENST00000513984 C8orf34Q49A92 452 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 STK31Q9BXU1 1019 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 NLRP2Q9NX02 1062 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 PARP4Q9UKK3 1724 aaKnown RBP18.88■□□□□ 0.61
VCAN-211ENST00000513984 TEFQ10587 303 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 CHRNA2Q15822 529 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms