RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TWISTNBQ3B726 338 aaPredicted RBP11.86□□□□□ -0.51
VCAN-210ENST00000513960 BAG4O95429 457 aaKnown RBP11.85□□□□□ -0.51
VCAN-210ENST00000513960 CHD1LQ86WJ1 897 aa11.85□□□□□ -0.51
VCAN-210ENST00000513960 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
VCAN-210ENST00000513960 OFD1O75665 1012 aa11.85□□□□□ -0.51
VCAN-210ENST00000513960 MBIPQ9NS73 344 aa11.85□□□□□ -0.51
VCAN-210ENST00000513960 CDC42BPGQ6DT37 1551 aa11.85□□□□□ -0.51
VCAN-210ENST00000513960 TSPYL6Q8N831 410 aa11.84□□□□□ -0.51
VCAN-210ENST00000513960 ARHGAP45Q92619 1136 aa11.84□□□□□ -0.51
VCAN-210ENST00000513960 CFAP44Q96MT7 982 aa11.84□□□□□ -0.51
VCAN-210ENST00000513960 CDK12Q9NYV4 1490 aaPredicted RBP11.84□□□□□ -0.51
VCAN-210ENST00000513960 MAP2P11137 1827 aaKnown RBP11.84□□□□□ -0.51
VCAN-210ENST00000513960 VIRMAQ69YN4 1812 aaKnown RBP11.84□□□□□ -0.51
VCAN-210ENST00000513960 BRPF1P55201 1214 aaPredicted RBP11.84□□□□□ -0.51
VCAN-210ENST00000513960 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
VCAN-210ENST00000513960 SYCE3A1L190 88 aa11.83□□□□□ -0.52
VCAN-210ENST00000513960 TMEM2Q9UHN6 1383 aa11.83□□□□□ -0.52
VCAN-210ENST00000513960 CHAMP1Q96JM3 812 aa11.83□□□□□ -0.52
VCAN-210ENST00000513960 API5Q9BZZ5 524 aaKnown RBP11.83□□□□□ -0.52
VCAN-210ENST00000513960 FAM83GA6ND36 823 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 SOX12O15370 315 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 HAP1P54257 671 aaPredicted RBP11.82□□□□□ -0.52
VCAN-210ENST00000513960 SULT6B1Q6IMI4 303 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 PLPPR3Q6T4P5 718 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 EID1Q9Y6B2 187 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 NUCB1Q02818 461 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 DCTN1Q14203 1278 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 PRR36Q9H6K5 1346 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 ZSCAN23Q3MJ62 389 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 TBC1D9Q6ZT07 1266 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 TTC21BQ7Z4L5 1316 aa11.82□□□□□ -0.52
VCAN-210ENST00000513960 ZBTB7BO15156 539 aaPredicted RBP11.81□□□□□ -0.52
VCAN-210ENST00000513960 ZNF853P0CG23 659 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 PRIM1P49642 420 aaKnown RBP11.81□□□□□ -0.52
VCAN-210ENST00000513960 GCC1Q96CN9 775 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 ACEP12821 1306 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 KLHL40Q2TBA0 621 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 C8orf58Q8NAV2 365 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 RBSNQ9H1K0 784 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 TECPR2O15040 1411 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 MAP7D2Q96T17 732 aa11.81□□□□□ -0.52
VCAN-210ENST00000513960 BCL11BQ9C0K0 894 aaPredicted RBP11.81□□□□□ -0.52
VCAN-210ENST00000513960 SETD1AO15047 1707 aaKnown RBP11.81□□□□□ -0.52
VCAN-210ENST00000513960 ROBO2Q9HCK4 1378 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 FAM177BA6PVY3 158 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 SLC26A8Q96RN1 970 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 CPS1P31327 1500 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 TSC1Q92574 1164 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 NUCB2P80303 420 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 EIF4A2Q14240 407 aaKnown RBP11.8□□□□□ -0.52
VCAN-210ENST00000513960 SNX21Q969T3 373 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 NRXN3Q9Y4C0 1643 aa11.8□□□□□ -0.52
VCAN-210ENST00000513960 KIAA2012Q0VF49 1180 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 CDC45O75419 566 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 CASC1Q6TDU7 716 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 AEBP1Q8IUX7 1158 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 CBX1P83916 185 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 CSPP1Q1MSJ5 1256 aa11.79□□□□□ -0.52
VCAN-210ENST00000513960 PKP1Q13835 747 aa11.78□□□□□ -0.52
VCAN-210ENST00000513960 ST18O60284 1047 aa11.78□□□□□ -0.52
VCAN-210ENST00000513960 RBM25P49756 843 aaKnown RBP11.78□□□□□ -0.52
VCAN-210ENST00000513960 LTKP29376 864 aa11.78□□□□□ -0.52
VCAN-210ENST00000513960 ZNF830Q96NB3 372 aaPredicted RBP11.78□□□□□ -0.52
VCAN-210ENST00000513960 PTCH1Q13635 1447 aa11.78□□□□□ -0.52
VCAN-210ENST00000513960 PLEKHG3A1L390 1219 aa11.77□□□□□ -0.52
VCAN-210ENST00000513960 NGDNQ8NEJ9 315 aaKnown RBP11.77□□□□□ -0.52
VCAN-210ENST00000513960 CCDC39Q9UFE4 941 aa11.77□□□□□ -0.52
VCAN-210ENST00000513960 ABCC4O15439 1325 aa11.77□□□□□ -0.52
VCAN-210ENST00000513960 CEBPAP49715 358 aaPredicted RBP11.77□□□□□ -0.52
VCAN-210ENST00000513960 HSP90AB2PQ58FF8 381 aa11.77□□□□□ -0.53
VCAN-210ENST00000513960 ZGPATQ8N5A5 531 aaKnown RBP11.77□□□□□ -0.53
VCAN-210ENST00000513960 PPP1R9BQ96SB3 815 aa11.77□□□□□ -0.53
VCAN-210ENST00000513960 BMP2KLQ5H9B9 411 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 MCM10Q7L590 875 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 RTF1Q92541 710 aaKnown RBP11.76□□□□□ -0.53
VCAN-210ENST00000513960 JARID2Q92833 1246 aaPredicted RBP11.76□□□□□ -0.53
VCAN-210ENST00000513960 PIK3R4Q99570 1358 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 PLEKHG1Q9ULL1 1385 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 AMOTL2Q9Y2J4 779 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 ADAMTS13Q76LX8 1427 aa11.76□□□□□ -0.53
VCAN-210ENST00000513960 ZKSCAN5Q9Y2L8 839 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 RABEP1Q15276 862 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 ITSN1Q15811 1721 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 KNDC1Q76NI1 1749 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 AMPHP49418 695 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 SASS6Q6UVJ0 657 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 GDPD2Q9HCC8 539 aa11.75□□□□□ -0.53
VCAN-210ENST00000513960 MON2Q7Z3U7 1717 aa11.74□□□□□ -0.53
VCAN-210ENST00000513960 IGSF3O75054 1194 aa11.74□□□□□ -0.53
VCAN-210ENST00000513960 NOL7Q9UMY1 257 aaKnown RBP11.74□□□□□ -0.53
VCAN-210ENST00000513960 USP6P35125 1406 aa11.74□□□□□ -0.53
VCAN-210ENST00000513960 CHL1O00533 1208 aa11.73□□□□□ -0.53
VCAN-210ENST00000513960 KRT24Q2M2I5 525 aa11.73□□□□□ -0.53
VCAN-210ENST00000513960 C17orf53Q8N3J3 647 aaPredicted RBP11.73□□□□□ -0.53
VCAN-210ENST00000513960 SPDYE4A6NLX3 237 aa11.73□□□□□ -0.53
VCAN-210ENST00000513960 SIRT2Q8IXJ6 389 aa11.73□□□□□ -0.53
VCAN-210ENST00000513960 TTC21AQ8NDW8 1320 aa11.73□□□□□ -0.53
VCAN-210ENST00000513960 C3P01024 1663 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 NEK4P51957 841 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 C16orf71Q8IYS4 520 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms