RNA–Protein interactions for RNA: ENST00000508063.1

PTPN13-207, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-207ENST00000508063 DDX54Q8TDD1 881 aaKnown RBP15.36■□□□□ 0.05
PTPN13-207ENST00000508063 NSD3Q9BZ95 1437 aa15.35■□□□□ 0.05
PTPN13-207ENST00000508063 MYOM1P52179 1685 aa15.35■□□□□ 0.05
PTPN13-207ENST00000508063 STK32BQ9NY57 414 aa15.35■□□□□ 0.05
PTPN13-207ENST00000508063 EIF4G2P78344 907 aaKnown RBP eCLIP15.34■□□□□ 0.05
PTPN13-207ENST00000508063 CARD14Q9BXL6 1004 aa15.34■□□□□ 0.05
PTPN13-207ENST00000508063 PPP1R1BQ9UD71 204 aaPredicted RBP15.34■□□□□ 0.05
PTPN13-207ENST00000508063 CGNL1Q0VF96 1302 aa15.34■□□□□ 0.05
PTPN13-207ENST00000508063 INSRP06213 1382 aa15.34■□□□□ 0.05
PTPN13-207ENST00000508063 FLT4P35916 1363 aa15.34■□□□□ 0.05
PTPN13-207ENST00000508063 KAT6BQ8WYB5 2073 aa15.34■□□□□ 0.05
PTPN13-207ENST00000508063 ZCRB1Q8TBF4 217 aaKnown RBP15.33■□□□□ 0.04
PTPN13-207ENST00000508063 RAPGEF4Q8WZA2 1011 aa15.33■□□□□ 0.04
PTPN13-207ENST00000508063 ANO8Q9HCE9 1232 aaPredicted RBP15.33■□□□□ 0.04
PTPN13-207ENST00000508063 RGPD2P0DJD1 1756 aa15.32■□□□□ 0.04
PTPN13-207ENST00000508063 BTAF1O14981 1849 aa15.32■□□□□ 0.04
PTPN13-207ENST00000508063 POLR3GLQ9BT43 218 aa15.32■□□□□ 0.04
PTPN13-207ENST00000508063 SLC15A2Q16348 729 aa15.31■□□□□ 0.04
PTPN13-207ENST00000508063 NBPF6Q5VWK0 638 aa15.31■□□□□ 0.04
PTPN13-207ENST00000508063 NBPF4Q96M43 638 aa15.31■□□□□ 0.04
PTPN13-207ENST00000508063 TATP17735 454 aaPredicted RBP15.3■□□□□ 0.04
PTPN13-207ENST00000508063 HSP90AB2PQ58FF8 381 aa15.3■□□□□ 0.04
PTPN13-207ENST00000508063 CASZ1Q86V15 1759 aa15.29■□□□□ 0.04
PTPN13-207ENST00000508063 MEGF6O75095 1541 aa15.29■□□□□ 0.04
PTPN13-207ENST00000508063 SLC27A3Q5K4L6 730 aa15.29■□□□□ 0.04
PTPN13-207ENST00000508063 MYCNP04198 464 aaPredicted RBP15.28■□□□□ 0.04
PTPN13-207ENST00000508063 HSPA5P11021 654 aaKnown RBP15.28■□□□□ 0.04
PTPN13-207ENST00000508063 USHBP1Q8N6Y0 703 aa15.28■□□□□ 0.04
PTPN13-207ENST00000508063 SYTL4Q96C24 671 aaPredicted RBP15.28■□□□□ 0.04
PTPN13-207ENST00000508063 PPM1GO15355 546 aaPredicted RBP15.27■□□□□ 0.04
PTPN13-207ENST00000508063 PRIM1P49642 420 aaKnown RBP15.27■□□□□ 0.04
PTPN13-207ENST00000508063 DOT1LQ8TEK3 1739 aa15.26■□□□□ 0.03
PTPN13-207ENST00000508063 SHANK3Q9BYB0 1731 aa15.26■□□□□ 0.03
PTPN13-207ENST00000508063 PCDH11XQ9BZA7 1347 aa15.26■□□□□ 0.03
PTPN13-207ENST00000508063 PCDH11YQ9BZA8 1340 aa15.26■□□□□ 0.03
PTPN13-207ENST00000508063 EMILIN1Q9Y6C2 1016 aa15.26■□□□□ 0.03
PTPN13-207ENST00000508063 WASHC2AQ641Q2 1341 aa15.25■□□□□ 0.03
PTPN13-207ENST00000508063 MAP2P11137 1827 aaKnown RBP15.25■□□□□ 0.03
PTPN13-207ENST00000508063 ZBTB7AO95365 584 aa15.25■□□□□ 0.03
PTPN13-207ENST00000508063 HMGB2P26583 209 aaKnown RBP15.25■□□□□ 0.03
PTPN13-207ENST00000508063 MTFR1LQ9H019 292 aa15.25■□□□□ 0.03
PTPN13-207ENST00000508063 ANKRD26Q9UPS8 1709 aa15.25■□□□□ 0.03
PTPN13-207ENST00000508063 PAPPAQ13219 1627 aa15.25■□□□□ 0.03
PTPN13-207ENST00000508063 PDGFDQ9GZP0 370 aaPredicted RBP15.24■□□□□ 0.03
PTPN13-207ENST00000508063 LRRC4BQ9NT99 713 aa15.23■□□□□ 0.03
PTPN13-207ENST00000508063 PANK3Q9H999 370 aa15.22■□□□□ 0.03
PTPN13-207ENST00000508063 POLKQ9UBT6 870 aa15.22■□□□□ 0.03
PTPN13-207ENST00000508063 SPG7Q9UQ90 795 aa15.22■□□□□ 0.03
PTPN13-207ENST00000508063 ATF5Q9Y2D1 282 aaPredicted RBP15.22■□□□□ 0.03
PTPN13-207ENST00000508063 NSD2O96028 1365 aa15.22■□□□□ 0.03
PTPN13-207ENST00000508063 LY75O60449 1722 aa15.21■□□□□ 0.03
PTPN13-207ENST00000508063 NCAPD2Q15021 1401 aa15.21■□□□□ 0.03
PTPN13-207ENST00000508063 PTGER2P43116 358 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 ZNF827Q17R98 1081 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 SLC16A10Q8TF71 515 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 AKT1S1Q96B36 256 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 CCNL1Q9UK58 526 aaPredicted RBP15.2■□□□□ 0.02
PTPN13-207ENST00000508063 QSER1Q2KHR3 1735 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 PKD1L3Q7Z443 1732 aa15.2■□□□□ 0.02
PTPN13-207ENST00000508063 TNNT2P45379 298 aaPredicted RBP15.19■□□□□ 0.02
PTPN13-207ENST00000508063 EYA1Q99502 592 aa15.19■□□□□ 0.02
PTPN13-207ENST00000508063 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.19■□□□□ 0.02
PTPN13-207ENST00000508063 TFCP2L1Q9NZI6 479 aa15.19■□□□□ 0.02
PTPN13-207ENST00000508063 CYP27B1O15528 508 aa15.18■□□□□ 0.02
PTPN13-207ENST00000508063 PLEKHG2Q9H7P9 1386 aa15.17■□□□□ 0.02
PTPN13-207ENST00000508063 MPRIPQ6WCQ1 1025 aa15.17■□□□□ 0.02
PTPN13-207ENST00000508063 MORC1Q86VD1 984 aa15.17■□□□□ 0.02
PTPN13-207ENST00000508063 SMARCC1Q92922 1105 aaPredicted RBP15.17■□□□□ 0.02
PTPN13-207ENST00000508063 KNSTRNQ9Y448 316 aa15.17■□□□□ 0.02
PTPN13-207ENST00000508063 EIF4A2Q14240 407 aaKnown RBP15.16■□□□□ 0.02
PTPN13-207ENST00000508063 NKX1-1Q15270 411 aaPredicted RBP15.16■□□□□ 0.02
PTPN13-207ENST00000508063 SAMD1Q6SPF0 538 aaPredicted RBP15.16■□□□□ 0.02
PTPN13-207ENST00000508063 ARXQ96QS3 562 aa15.16■□□□□ 0.02
PTPN13-207ENST00000508063 SGIP1Q9BQI5 828 aa15.16■□□□□ 0.02
PTPN13-207ENST00000508063 POLD1P28340 1107 aa15.15■□□□□ 0.02
PTPN13-207ENST00000508063 KCNQ4P56696 695 aa15.15■□□□□ 0.02
PTPN13-207ENST00000508063 SPINK5Q9NQ38 1064 aaPredicted RBP15.15■□□□□ 0.02
PTPN13-207ENST00000508063 PNPLA7Q6ZV29 1317 aa15.15■□□□□ 0.02
PTPN13-207ENST00000508063 PALLDQ8WX93 1383 aa15.14■□□□□ 0.01
PTPN13-207ENST00000508063 IFNL2Q8IZJ0 200 aa15.14■□□□□ 0.01
PTPN13-207ENST00000508063 FHDC1Q9C0D6 1143 aaPredicted RBP15.14■□□□□ 0.01
PTPN13-207ENST00000508063 ITGB4P16144 1822 aa15.14■□□□□ 0.01
PTPN13-207ENST00000508063 SYT17Q9BSW7 474 aa15.13■□□□□ 0.01
PTPN13-207ENST00000508063 IGSF1Q8N6C5 1336 aa15.13■□□□□ 0.01
PTPN13-207ENST00000508063 TUBGCP6Q96RT7 1819 aa15.13■□□□□ 0.01
PTPN13-207ENST00000508063 TOGARAM1Q9Y4F4 1720 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 PHKG2P15735 406 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 YY1P25490 414 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 FLAD1Q8NFF5 587 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 TMOD3Q9NYL9 352 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 C5P01031 1676 aa15.12■□□□□ 0.01
PTPN13-207ENST00000508063 MAP3K5Q99683 1374 aa15.11■□□□□ 0.01
PTPN13-207ENST00000508063 PIGBQ92521 554 aa15.11■□□□□ 0.01
PTPN13-207ENST00000508063 KIF7Q2M1P5 1343 aa15.11■□□□□ 0.01
PTPN13-207ENST00000508063 COL24A1Q17RW2 1714 aa15.1■□□□□ 0.01
PTPN13-207ENST00000508063 HSP90AB1P08238 724 aaKnown RBP15.1■□□□□ 0.01
PTPN13-207ENST00000508063 PLEKHO1Q53GL0 409 aaPredicted RBP15.1■□□□□ 0.01
PTPN13-207ENST00000508063 TAF1LQ8IZX4 1826 aa15.09■□□□□ 0.01
PTPN13-207ENST00000508063 AMOTQ4VCS5 1084 aa15.09■□□□□ 0.01
PTPN13-207ENST00000508063 AK7Q96M32 723 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms