RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 SAFB2Q14151 953 aaKnown RBP eCLIP21.72■■□□□ 1.07
NUP54-205ENST00000507257 SASS6Q6UVJ0 657 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 TMEM63CQ9P1W3 806 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 DLC1Q96QB1 1528 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 RGS12O14924 1447 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 UQCRHLA0A096LP55 91 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 UQCRHP07919 91 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 IL13P35225 146 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 PRAM1Q96QH2 718 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 OSBPL3Q9H4L5 887 aa21.72■■□□□ 1.07
NUP54-205ENST00000507257 ZGPATQ8N5A5 531 aaKnown RBP21.71■■□□□ 1.07
NUP54-205ENST00000507257 C8orf58Q8NAV2 365 aa21.71■■□□□ 1.07
NUP54-205ENST00000507257 MINK1Q8N4C8 1332 aaPredicted RBP21.71■■□□□ 1.07
NUP54-205ENST00000507257 ERC2O15083 957 aa21.7■■□□□ 1.07
NUP54-205ENST00000507257 XPCQ01831 940 aaPredicted RBP21.7■■□□□ 1.06
NUP54-205ENST00000507257 CEP85Q6P2H3 762 aa21.7■■□□□ 1.06
NUP54-205ENST00000507257 THUMPD2Q9BTF0 503 aaKnown RBP21.69■■□□□ 1.06
NUP54-205ENST00000507257 CDK19Q9BWU1 502 aa21.69■■□□□ 1.06
NUP54-205ENST00000507257 BRD1O95696 1058 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 CUL4AQ13619 759 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 IDI1Q13907 227 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 IL17RAQ96F46 866 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 STK26Q9P289 416 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 RBM27Q9P2N5 1060 aaKnown RBP21.68■■□□□ 1.06
NUP54-205ENST00000507257 ALKQ9UM73 1620 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 RTL1A6NKG5 1358 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 TUBGCP6Q96RT7 1819 aa21.68■■□□□ 1.06
NUP54-205ENST00000507257 NUTM2DQ5VT03 806 aaPredicted RBP21.68■■□□□ 1.06
NUP54-205ENST00000507257 SYAP1Q96A49 352 aaPredicted RBP21.68■■□□□ 1.06
NUP54-205ENST00000507257 INTS4Q96HW7 963 aaKnown RBP21.68■■□□□ 1.06
NUP54-205ENST00000507257 C16orf71Q8IYS4 520 aaPredicted RBP21.67■■□□□ 1.06
NUP54-205ENST00000507257 KLHL34Q8N239 644 aa21.67■■□□□ 1.06
NUP54-205ENST00000507257 CABP1Q9NZU7 370 aa21.67■■□□□ 1.06
NUP54-205ENST00000507257 PTPRCP08575 1304 aa21.67■■□□□ 1.06
NUP54-205ENST00000507257 PREX1Q8TCU6 1659 aa21.67■■□□□ 1.06
NUP54-205ENST00000507257 EDC4Q6P2E9 1401 aaKnown RBP21.67■■□□□ 1.06
NUP54-205ENST00000507257 SYCE3A1L190 88 aa21.67■■□□□ 1.06
NUP54-205ENST00000507257 RBM10P98175 930 aaKnown RBP21.67■■□□□ 1.06
NUP54-205ENST00000507257 KIAA0232Q92628 1395 aa21.66■■□□□ 1.06
NUP54-205ENST00000507257 SMAP1Q8IYB5 467 aaPredicted RBP21.66■■□□□ 1.06
NUP54-205ENST00000507257 FAM13BQ9NYF5 915 aa21.66■■□□□ 1.06
NUP54-205ENST00000507257 DIP2CQ9Y2E4 1556 aa21.66■■□□□ 1.06
NUP54-205ENST00000507257 HMOX1P09601 288 aa21.65■■□□□ 1.06
NUP54-205ENST00000507257 ANAPC15P60006 121 aa21.65■■□□□ 1.06
NUP54-205ENST00000507257 ELL2O00472 640 aaPredicted RBP21.65■■□□□ 1.06
NUP54-205ENST00000507257 PHF14O94880 888 aa21.65■■□□□ 1.06
NUP54-205ENST00000507257 NRKQ7Z2Y5 1582 aa21.64■■□□□ 1.05
NUP54-205ENST00000507257 UVSSAQ2YD98 709 aa21.64■■□□□ 1.05
NUP54-205ENST00000507257 FAM184AQ8NB25 1140 aa21.64■■□□□ 1.05
NUP54-205ENST00000507257 OTUD7AQ8TE49 926 aaPredicted RBP21.64■■□□□ 1.05
NUP54-205ENST00000507257 TSPY26PQ9H489 355 aa21.64■■□□□ 1.05
NUP54-205ENST00000507257 PRDM4Q9UKN5 801 aa21.64■■□□□ 1.05
NUP54-205ENST00000507257 TMX3Q96JJ7 454 aa21.63■■□□□ 1.05
NUP54-205ENST00000507257 SSH2Q76I76 1423 aa21.63■■□□□ 1.05
NUP54-205ENST00000507257 HMMRO75330 724 aa21.63■■□□□ 1.05
NUP54-205ENST00000507257 EPB41L2O43491 1005 aaKnown RBP21.62■■□□□ 1.05
NUP54-205ENST00000507257 KIAA2012Q0VF49 1180 aa21.62■■□□□ 1.05
NUP54-205ENST00000507257 NSFL1CQ9UNZ2 370 aaKnown RBP21.62■■□□□ 1.05
NUP54-205ENST00000507257 NEO1Q92859 1461 aa21.61■■□□□ 1.05
NUP54-205ENST00000507257 MSH6P52701 1360 aa21.61■■□□□ 1.05
NUP54-205ENST00000507257 PRIMPOLQ96LW4 560 aa21.61■■□□□ 1.05
NUP54-205ENST00000507257 MCCP23508 829 aa21.59■■□□□ 1.05
NUP54-205ENST00000507257 MYRIPQ8NFW9 859 aa21.59■■□□□ 1.05
NUP54-205ENST00000507257 MON2Q7Z3U7 1717 aa21.59■■□□□ 1.05
NUP54-205ENST00000507257 PDE1AP54750 535 aa21.59■■□□□ 1.05
NUP54-205ENST00000507257 NEK4P51957 841 aa21.58■■□□□ 1.04
NUP54-205ENST00000507257 EMILIN1Q9Y6C2 1016 aa21.58■■□□□ 1.04
NUP54-205ENST00000507257 SALL3Q9BXA9 1300 aa21.57■■□□□ 1.04
NUP54-205ENST00000507257 CHL1O00533 1208 aa21.57■■□□□ 1.04
NUP54-205ENST00000507257 GTF2F1P35269 517 aaKnown RBP eCLIP21.57■■□□□ 1.04
NUP54-205ENST00000507257 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.57■■□□□ 1.042e-11■■□□□ 11.8
NUP54-205ENST00000507257 TMEM87AQ8NBN3 555 aa21.57■■□□□ 1.04
NUP54-205ENST00000507257 HMGN5P82970 282 aaKnown RBP21.57■■□□□ 1.04
NUP54-205ENST00000507257 SETD1AO15047 1707 aaKnown RBP21.56■■□□□ 1.04
NUP54-205ENST00000507257 ESYT1Q9BSJ8 1104 aa21.56■■□□□ 1.04
NUP54-205ENST00000507257 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
NUP54-205ENST00000507257 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
NUP54-205ENST00000507257 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
NUP54-205ENST00000507257 SMARCA5O60264 1052 aaPredicted RBP21.55■■□□□ 1.04
NUP54-205ENST00000507257 PIBF1Q8WXW3 757 aa21.55■■□□□ 1.04
NUP54-205ENST00000507257 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.55■■□□□ 1.049e-6■□□□□ 11.3
NUP54-205ENST00000507257 CCDC94Q9BW85 323 aaPredicted RBP21.55■■□□□ 1.04
NUP54-205ENST00000507257 PTMAP06454 111 aaKnown RBP21.54■■□□□ 1.04
NUP54-205ENST00000507257 MEIS3Q99687 375 aa21.54■■□□□ 1.04
NUP54-205ENST00000507257 C3P01024 1663 aa21.53■■□□□ 1.04
NUP54-205ENST00000507257 LETM1O95202 739 aaPredicted RBP21.53■■□□□ 1.04
NUP54-205ENST00000507257 WDR33Q9C0J8 1336 aaKnown RBP21.53■■□□□ 1.04
NUP54-205ENST00000507257 FBLN1P23142 703 aa21.53■■□□□ 1.04
NUP54-205ENST00000507257 AKAP12Q02952 1782 aa21.52■■□□□ 1.04
NUP54-205ENST00000507257 ARHGEF10O15013 1369 aa21.52■■□□□ 1.04
NUP54-205ENST00000507257 FAM83GA6ND36 823 aa21.52■■□□□ 1.04
NUP54-205ENST00000507257 PLEKHG5O94827 1062 aa21.52■■□□□ 1.04
NUP54-205ENST00000507257 RNF214Q8ND24 703 aa21.52■■□□□ 1.04
NUP54-205ENST00000507257 CCT4P50991 539 aaKnown RBP21.51■■□□□ 1.03
NUP54-205ENST00000507257 UTP14CQ5TAP6 766 aaKnown RBP21.51■■□□□ 1.03
NUP54-205ENST00000507257 SPTLC3Q9NUV7 552 aa21.51■■□□□ 1.03
NUP54-205ENST00000507257 RICTORQ6R327 1708 aa21.5■■□□□ 1.03
NUP54-205ENST00000507257 CHAMP1Q96JM3 812 aa21.5■■□□□ 1.03
NUP54-205ENST00000507257 AOX1Q06278 1338 aa21.49■■□□□ 1.03
NUP54-205ENST00000507257 CCDC183Q5T5S1 534 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms