RNA–Protein interactions for RNA: ENST00000506239.6

SMN1-205, Transcript of survival of motor neuron 1, telomeric, humanhuman

TSL 5

Gene SMN1, Length 1,550 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-205ENST00000506239 RTF1Q92541 710 aaKnown RBP23.87■■□□□ 1.41
SMN1-205ENST00000506239 FAM208AQ9UK61 1670 aaKnown RBP23.87■■□□□ 1.41
SMN1-205ENST00000506239 ABCA3Q99758 1704 aa23.87■■□□□ 1.41
SMN1-205ENST00000506239 MCM10Q7L590 875 aa23.86■■□□□ 1.41
SMN1-205ENST00000506239 MAP3K5Q99683 1374 aa23.86■■□□□ 1.41
SMN1-205ENST00000506239 CHL1O00533 1208 aa23.86■■□□□ 1.41
SMN1-205ENST00000506239 GNAT3A8MTJ3 354 aa23.85■■□□□ 1.41
SMN1-205ENST00000506239 ALDH1L2Q3SY69 923 aa23.85■■□□□ 1.41
SMN1-205ENST00000506239 CCDC136Q96JN2 1154 aa23.85■■□□□ 1.41
SMN1-205ENST00000506239 KIAA0232Q92628 1395 aa23.85■■□□□ 1.41
SMN1-205ENST00000506239 AHDC1Q5TGY3 1603 aaPredicted RBP23.84■■□□□ 1.41
SMN1-205ENST00000506239 ROBO1Q9Y6N7 1651 aa23.83■■□□□ 1.41
SMN1-205ENST00000506239 PLEKHG2Q9H7P9 1386 aa23.83■■□□□ 1.4
SMN1-205ENST00000506239 CANXP27824 592 aaKnown RBP23.82■■□□□ 1.4
SMN1-205ENST00000506239 BRPF1P55201 1214 aaPredicted RBP23.82■■□□□ 1.4
SMN1-205ENST00000506239 AMOTQ4VCS5 1084 aa23.82■■□□□ 1.4
SMN1-205ENST00000506239 SSH1Q8WYL5 1049 aa23.82■■□□□ 1.4
SMN1-205ENST00000506239 SMC4Q9NTJ3 1288 aa23.82■■□□□ 1.4
SMN1-205ENST00000506239 VAMP4O75379 141 aa23.81■■□□□ 1.4
SMN1-205ENST00000506239 BCL2L13Q9BXK5 485 aa23.81■■□□□ 1.4
SMN1-205ENST00000506239 PLEKHO1Q53GL0 409 aaPredicted RBP23.79■■□□□ 1.4
SMN1-205ENST00000506239 FRAT1Q92837 279 aaPredicted RBP23.79■■□□□ 1.4
SMN1-205ENST00000506239 CHRNA2Q15822 529 aa23.78■■□□□ 1.4
SMN1-205ENST00000506239 TWISTNBQ3B726 338 aaPredicted RBP23.78■■□□□ 1.4
SMN1-205ENST00000506239 TSPYL6Q8N831 410 aa23.78■■□□□ 1.4
SMN1-205ENST00000506239 KIF16BQ96L93 1317 aa23.77■■□□□ 1.4
SMN1-205ENST00000506239 CEMIPQ8WUJ3 1361 aa23.77■■□□□ 1.4
SMN1-205ENST00000506239 ZKSCAN2Q63HK3 967 aa23.77■■□□□ 1.4
SMN1-205ENST00000506239 C8orf58Q8NAV2 365 aa23.77■■□□□ 1.4
SMN1-205ENST00000506239 BABAM1Q9NWV8 329 aa23.77■■□□□ 1.4
SMN1-205ENST00000506239 MS4A1P11836 297 aa23.76■■□□□ 1.39
SMN1-205ENST00000506239 HAP1P54257 671 aaPredicted RBP23.76■■□□□ 1.39
SMN1-205ENST00000506239 AKAP4Q5JQC9 854 aa23.76■■□□□ 1.39
SMN1-205ENST00000506239 IL17REQ8NFR9 667 aa23.76■■□□□ 1.39
SMN1-205ENST00000506239 OVOS2A0A0G2JMS6 1433 aa23.75■■□□□ 1.39
SMN1-205ENST00000506239 PRDM11Q9NQV5 511 aa23.74■■□□□ 1.39
SMN1-205ENST00000506239 NLRP2Q9NX02 1062 aa23.74■■□□□ 1.39
SMN1-205ENST00000506239 COL22A1Q8NFW1 1626 aaPredicted RBP23.74■■□□□ 1.39
SMN1-205ENST00000506239 ZNF530Q6P9A1 599 aaPredicted RBP23.74■■□□□ 1.39
SMN1-205ENST00000506239 PANK1Q8TE04 598 aa23.74■■□□□ 1.39
SMN1-205ENST00000506239 AAMPQ13685 434 aa23.73■■□□□ 1.39
SMN1-205ENST00000506239 TSPYL4Q9UJ04 414 aa23.73■■□□□ 1.39
SMN1-205ENST00000506239 IPO8O15397 1037 aaKnown RBP23.72■■□□□ 1.39
SMN1-205ENST00000506239 CSB-PGBD3P0DP91 1061 aa23.72■■□□□ 1.39
SMN1-205ENST00000506239 RLBP1P12271 317 aa23.71■■□□□ 1.39
SMN1-205ENST00000506239 ATF7IPQ6VMQ6 1270 aa23.71■■□□□ 1.39
SMN1-205ENST00000506239 MRPL50Q8N5N7 158 aaKnown RBP23.71■■□□□ 1.39
SMN1-205ENST00000506239 RAPGEF4Q8WZA2 1011 aa23.71■■□□□ 1.39
SMN1-205ENST00000506239 NOB1Q9ULX3 412 aaKnown RBP23.71■■□□□ 1.39
SMN1-205ENST00000506239 COL5A2P05997 1499 aaPredicted RBP23.71■■□□□ 1.39
SMN1-205ENST00000506239 ADAMTS7Q9UKP4 1686 aa23.71■■□□□ 1.39
SMN1-205ENST00000506239 WDR17Q8IZU2 1322 aa23.7■■□□□ 1.39
SMN1-205ENST00000506239 TAF7Q15545 349 aaPredicted RBP23.7■■□□□ 1.38
SMN1-205ENST00000506239 DZIP1LQ8IYY4 767 aaKnown RBP23.7■■□□□ 1.38
SMN1-205ENST00000506239 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.7■■□□□ 1.38
SMN1-205ENST00000506239 TRIM27P14373 513 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 C1orf141Q5JVX7 400 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 TNNQ9UQP3 1299 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 COG6Q9Y2V7 657 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 MEGF6O75095 1541 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 ELL2O00472 640 aaPredicted RBP23.69■■□□□ 1.38
SMN1-205ENST00000506239 TATP17735 454 aaPredicted RBP23.69■■□□□ 1.38
SMN1-205ENST00000506239 ARHGAP45Q92619 1136 aa23.69■■□□□ 1.38
SMN1-205ENST00000506239 PKD1L3Q7Z443 1732 aa23.68■■□□□ 1.38
SMN1-205ENST00000506239 SOS1Q07889 1333 aaPredicted RBP23.67■■□□□ 1.38
SMN1-205ENST00000506239 FTSJ3Q8IY81 847 aaKnown RBP23.67■■□□□ 1.38
SMN1-205ENST00000506239 MIS18AQ9NYP9 233 aa23.67■■□□□ 1.38
SMN1-205ENST00000506239 VIRMAQ69YN4 1812 aaKnown RBP23.66■■□□□ 1.38
SMN1-205ENST00000506239 MVPQ14764 893 aaKnown RBP23.66■■□□□ 1.38
SMN1-205ENST00000506239 COL16A1Q07092 1604 aaPredicted RBP23.66■■□□□ 1.38
SMN1-205ENST00000506239 KRT24Q2M2I5 525 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 CLUAP1Q96AJ1 413 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 LGR6Q9HBX8 967 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 KDM3BQ7LBC6 1761 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 PHLPP1O60346 1717 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 RNMTO43148 476 aaKnown RBP23.65■■□□□ 1.38
SMN1-205ENST00000506239 TOM1O60784 492 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 SPG7Q9UQ90 795 aa23.65■■□□□ 1.38
SMN1-205ENST00000506239 PARP4Q9UKK3 1724 aaKnown RBP23.63■■□□□ 1.37
SMN1-205ENST00000506239 KDM2BQ8NHM5 1336 aa23.63■■□□□ 1.37
SMN1-205ENST00000506239 COL14A1Q05707 1796 aaKnown RBP23.63■■□□□ 1.37
SMN1-205ENST00000506239 SIPA1L3O60292 1781 aaPredicted RBP23.61■■□□□ 1.37
SMN1-205ENST00000506239 MPRIPQ6WCQ1 1025 aa23.61■■□□□ 1.37
SMN1-205ENST00000506239 CARD10Q9BWT7 1032 aa23.61■■□□□ 1.37
SMN1-205ENST00000506239 TEFQ10587 303 aa23.61■■□□□ 1.37
SMN1-205ENST00000506239 TOM1L2Q6ZVM7 507 aa23.61■■□□□ 1.37
SMN1-205ENST00000506239 CENPQQ7L2Z9 268 aaPredicted RBP23.6■■□□□ 1.37
SMN1-205ENST00000506239 DDX19BQ9UMR2 479 aa23.6■■□□□ 1.37
SMN1-205ENST00000506239 SCN11AQ9UI33 1791 aa23.6■■□□□ 1.37
SMN1-205ENST00000506239 PHKG2P15735 406 aa23.59■■□□□ 1.37
SMN1-205ENST00000506239 ABCC4O15439 1325 aa23.59■■□□□ 1.37
SMN1-205ENST00000506239 IFNL2Q8IZJ0 200 aa23.58■■□□□ 1.37
SMN1-205ENST00000506239 API5Q9BZZ5 524 aaKnown RBP23.58■■□□□ 1.37
SMN1-205ENST00000506239 TMEM57Q8N5G2 664 aa23.57■■□□□ 1.36
SMN1-205ENST00000506239 KDM6AO15550 1401 aaPredicted RBP23.57■■□□□ 1.36
SMN1-205ENST00000506239 TCERG1O14776 1098 aaKnown RBP23.57■■□□□ 1.36
SMN1-205ENST00000506239 MRC1P22897 1456 aa23.56■■□□□ 1.36
SMN1-205ENST00000506239 HOXB7P09629 217 aa23.56■■□□□ 1.36
SMN1-205ENST00000506239 ITPRIPQ8IWB1 547 aa23.56■■□□□ 1.36
SMN1-205ENST00000506239 PTPRCP08575 1304 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms