RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 R3HDM1Q15032 1099 aaKnown RBP24.33■■□□□ 1.49
NFKB1-204ENST00000504044 EYA1Q99502 592 aa24.33■■□□□ 1.49
NFKB1-204ENST00000504044 PER1O15534 1290 aaPredicted RBP24.32■■□□□ 1.48
NFKB1-204ENST00000504044 KCNQ2O43526 872 aa24.32■■□□□ 1.48
NFKB1-204ENST00000504044 SYTL4Q96C24 671 aaPredicted RBP24.32■■□□□ 1.48
NFKB1-204ENST00000504044 PLEKHG2Q9H7P9 1386 aa24.31■■□□□ 1.48
NFKB1-204ENST00000504044 NPC1L1Q9UHC9 1359 aa24.31■■□□□ 1.48
NFKB1-204ENST00000504044 RGPD3A6NKT7 1758 aaPredicted RBP24.3■■□□□ 1.48
NFKB1-204ENST00000504044 RGPD4Q7Z3J3 1758 aa24.3■■□□□ 1.48
NFKB1-204ENST00000504044 CC2D1BQ5T0F9 858 aaKnown RBP24.3■■□□□ 1.48
NFKB1-204ENST00000504044 PTF1AQ7RTS3 328 aa24.3■■□□□ 1.48
NFKB1-204ENST00000504044 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.3■■□□□ 1.489e-11■■□□□ 13.1
NFKB1-204ENST00000504044 NCAPD2Q15021 1401 aa24.29■■□□□ 1.48
NFKB1-204ENST00000504044 MAP2P11137 1827 aaKnown RBP24.29■■□□□ 1.48
NFKB1-204ENST00000504044 SBF2Q86WG5 1849 aa24.29■■□□□ 1.48
NFKB1-204ENST00000504044 TXNRD1Q16881 649 aa24.29■■□□□ 1.48
NFKB1-204ENST00000504044 NHSQ6T4R5 1651 aa24.29■■□□□ 1.48
NFKB1-204ENST00000504044 HMGB2P26583 209 aaKnown RBP24.28■■□□□ 1.48
NFKB1-204ENST00000504044 IGSF1Q8N6C5 1336 aa24.27■■□□□ 1.48
NFKB1-204ENST00000504044 RREB1Q92766 1687 aa24.27■■□□□ 1.48
NFKB1-204ENST00000504044 PRIM1P49642 420 aaKnown RBP24.26■■□□□ 1.47
NFKB1-204ENST00000504044 STK32BQ9NY57 414 aa24.26■■□□□ 1.47
NFKB1-204ENST00000504044 RGPD2P0DJD1 1756 aa24.26■■□□□ 1.47
NFKB1-204ENST00000504044 MTHFSP49914 203 aa24.23■■□□□ 1.47
NFKB1-204ENST00000504044 SLC27A3Q5K4L6 730 aa24.23■■□□□ 1.47
NFKB1-204ENST00000504044 IFNL2Q8IZJ0 200 aa24.23■■□□□ 1.47
NFKB1-204ENST00000504044 AMOTQ4VCS5 1084 aa24.22■■□□□ 1.47
NFKB1-204ENST00000504044 PLEKHO1Q53GL0 409 aaPredicted RBP24.22■■□□□ 1.47
NFKB1-204ENST00000504044 NUP188Q5SRE5 1749 aa24.21■■□□□ 1.47
NFKB1-204ENST00000504044 CYP27B1O15528 508 aa24.21■■□□□ 1.47
NFKB1-204ENST00000504044 PROM2Q8N271 834 aa24.21■■□□□ 1.47
NFKB1-204ENST00000504044 HSP90AB1P08238 724 aaKnown RBP24.2■■□□□ 1.46
NFKB1-204ENST00000504044 CNGB1Q14028 1251 aaPredicted RBP24.2■■□□□ 1.46
NFKB1-204ENST00000504044 NKX1-1Q15270 411 aaPredicted RBP24.19■■□□□ 1.46
NFKB1-204ENST00000504044 IL13P35225 146 aa24.18■■□□□ 1.46
NFKB1-204ENST00000504044 DIAPH1O60610 1272 aaKnown RBP24.17■■□□□ 1.46
NFKB1-204ENST00000504044 SLC15A2Q16348 729 aa24.17■■□□□ 1.46
NFKB1-204ENST00000504044 SULT6B1Q6IMI4 303 aa24.17■■□□□ 1.46
NFKB1-204ENST00000504044 SMARCC1Q92922 1105 aaPredicted RBP24.17■■□□□ 1.46
NFKB1-204ENST00000504044 CFAP53Q96M91 514 aa24.17■■□□□ 1.46
NFKB1-204ENST00000504044 PHKG2P15735 406 aa24.16■■□□□ 1.46
NFKB1-204ENST00000504044 MPRIPQ6WCQ1 1025 aa24.16■■□□□ 1.46
NFKB1-204ENST00000504044 ANO8Q9HCE9 1232 aaPredicted RBP24.16■■□□□ 1.46
NFKB1-204ENST00000504044 ZEB1P37275 1124 aaPredicted RBP24.15■■□□□ 1.46
NFKB1-204ENST00000504044 C1orf141Q5JVX7 400 aa24.15■■□□□ 1.46
NFKB1-204ENST00000504044 PKD1L3Q7Z443 1732 aa24.15■■□□□ 1.46
NFKB1-204ENST00000504044 SHANK3Q9BYB0 1731 aa24.15■■□□□ 1.46
NFKB1-204ENST00000504044 BTAF1O14981 1849 aa24.14■■□□□ 1.46
NFKB1-204ENST00000504044 DOT1LQ8TEK3 1739 aa24.14■■□□□ 1.45
NFKB1-204ENST00000504044 ZNF530Q6P9A1 599 aaPredicted RBP24.13■■□□□ 1.45
NFKB1-204ENST00000504044 SPON1Q9HCB6 807 aa24.13■■□□□ 1.45
NFKB1-204ENST00000504044 TMOD3Q9NYL9 352 aa24.13■■□□□ 1.45
NFKB1-204ENST00000504044 CCNL1Q9UK58 526 aaPredicted RBP24.13■■□□□ 1.45
NFKB1-204ENST00000504044 LRP5O75197 1615 aa24.13■■□□□ 1.45
NFKB1-204ENST00000504044 DCAF5Q96JK2 942 aa24.12■■□□□ 1.45
NFKB1-204ENST00000504044 KDRP35968 1356 aa24.12■■□□□ 1.45
NFKB1-204ENST00000504044 KAT6BQ8WYB5 2073 aa24.12■■□□□ 1.45
NFKB1-204ENST00000504044 AEBP1Q8IUX7 1158 aa24.1■■□□□ 1.45
NFKB1-204ENST00000504044 PALLDQ8WX93 1383 aa24.09■■□□□ 1.45
NFKB1-204ENST00000504044 NUDCQ9Y266 331 aa24.09■■□□□ 1.45
NFKB1-204ENST00000504044 ERVV-2B6SEH9 535 aa24.08■■□□□ 1.45
NFKB1-204ENST00000504044 LRRC4BQ9NT99 713 aa24.08■■□□□ 1.45
NFKB1-204ENST00000504044 PPP1R1BQ9UD71 204 aaPredicted RBP24.08■■□□□ 1.45
NFKB1-204ENST00000504044 U2SURPO15042 1029 aaKnown RBP24.07■■□□□ 1.44
NFKB1-204ENST00000504044 PIGBQ92521 554 aa24.07■■□□□ 1.44
NFKB1-204ENST00000504044 TFCP2L1Q9NZI6 479 aa24.06■■□□□ 1.44
NFKB1-204ENST00000504044 HMOX1P09601 288 aa24.05■■□□□ 1.44
NFKB1-204ENST00000504044 CABP4P57796 275 aa24.04■■□□□ 1.44
NFKB1-204ENST00000504044 AKAP4Q5JQC9 854 aa24.03■■□□□ 1.44
NFKB1-204ENST00000504044 AKT1S1Q96B36 256 aa24.03■■□□□ 1.44
NFKB1-204ENST00000504044 MTFR1LQ9H019 292 aa24.03■■□□□ 1.44
NFKB1-204ENST00000504044 PPP2R1AP30153 589 aa24.02■■□□□ 1.44
NFKB1-204ENST00000504044 ZNF827Q17R98 1081 aa24.02■■□□□ 1.44
NFKB1-204ENST00000504044 SLC16A10Q8TF71 515 aa24.01■■□□□ 1.43
NFKB1-204ENST00000504044 PAPPAQ13219 1627 aa24.01■■□□□ 1.43
NFKB1-204ENST00000504044 ZBTB7AO95365 584 aa24■■□□□ 1.43
NFKB1-204ENST00000504044 FLAD1Q8NFF5 587 aa24■■□□□ 1.43
NFKB1-204ENST00000504044 KCNQ4P56696 695 aa23.99■■□□□ 1.43
NFKB1-204ENST00000504044 LOC102724428A0A0B4J2F2 783 aa23.98■■□□□ 1.43
NFKB1-204ENST00000504044 SIK1P57059 783 aa23.98■■□□□ 1.43
NFKB1-204ENST00000504044 GAS2L2Q8NHY3 880 aa23.98■■□□□ 1.43
NFKB1-204ENST00000504044 COL3A1P02461 1466 aaPredicted RBP23.98■■□□□ 1.43
NFKB1-204ENST00000504044 LY75O60449 1722 aa23.98■■□□□ 1.43
NFKB1-204ENST00000504044 AK7Q96M32 723 aa23.97■■□□□ 1.43
NFKB1-204ENST00000504044 ASAP1Q9ULH1 1129 aa23.97■■□□□ 1.43
NFKB1-204ENST00000504044 TOGARAM1Q9Y4F4 1720 aa23.96■■□□□ 1.43
NFKB1-204ENST00000504044 MSH5O43196 834 aa23.95■■□□□ 1.42
NFKB1-204ENST00000504044 NEFMP07197 916 aa23.95■■□□□ 1.42
NFKB1-204ENST00000504044 ATP6V1AP38606 617 aa23.95■■□□□ 1.42
NFKB1-204ENST00000504044 RALBP1Q15311 655 aa23.95■■□□□ 1.42
NFKB1-204ENST00000504044 ATG3Q9NT62 314 aa23.95■■□□□ 1.42
NFKB1-204ENST00000504044 ATF5Q9Y2D1 282 aaPredicted RBP23.95■■□□□ 1.42
NFKB1-204ENST00000504044 KDM6AO15550 1401 aaPredicted RBP23.94■■□□□ 1.42
NFKB1-204ENST00000504044 U2AF1L5P0DN76 240 aaPredicted RBP23.94■■□□□ 1.42
NFKB1-204ENST00000504044 POLD1P28340 1107 aa23.94■■□□□ 1.42
NFKB1-204ENST00000504044 U2AF1Q01081 240 aaKnown RBP eCLIP23.94■■□□□ 1.42
NFKB1-204ENST00000504044 DDX10Q13206 875 aaKnown RBP23.94■■□□□ 1.42
NFKB1-204ENST00000504044 PDGFDQ9GZP0 370 aaPredicted RBP23.94■■□□□ 1.42
NFKB1-204ENST00000504044 CASZ1Q86V15 1759 aa23.93■■□□□ 1.42
NFKB1-204ENST00000504044 PNPLA7Q6ZV29 1317 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms