RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 ARID3AQ99856 593 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 LMBRD1Q9NUN5 540 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 TECPR2O15040 1411 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 SSFA2P28290 1259 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 ATF3P18847 181 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 PRIM1P49642 420 aaKnown RBP11.11□□□□□ -0.63
HPS4-217ENST00000496385 DNTTIP2Q5QJE6 756 aaKnown RBP11.11□□□□□ -0.63
HPS4-217ENST00000496385 ZNF830Q96NB3 372 aaPredicted RBP11.11□□□□□ -0.63
HPS4-217ENST00000496385 C19orf44Q9H6X5 657 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 OGFRQ9NZT2 677 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 CAVIN1Q6NZI2 390 aaKnown RBP11.1□□□□□ -0.63
HPS4-217ENST00000496385 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
HPS4-217ENST00000496385 DIAPH3Q9NSV4 1193 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 KNDC1Q76NI1 1749 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 MVPQ14764 893 aaKnown RBP11.1□□□□□ -0.63
HPS4-217ENST00000496385 SYCP1Q15431 976 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 CDCA8Q53HL2 280 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 ANKRD7Q92527 254 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 TSPYL1Q9H0U9 437 aa11.1□□□□□ -0.63
HPS4-217ENST00000496385 CYP2E1P05181 493 aaPredicted RBP11.09□□□□□ -0.63
HPS4-217ENST00000496385 KLHL34Q8N239 644 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 CFAP44Q96MT7 982 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 SPTLC3Q9NUV7 552 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 ADGRL3Q9HAR2 1447 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 NOLC1Q14978 699 aaKnown RBP eCLIP11.09□□□□□ -0.63
HPS4-217ENST00000496385 UVSSAQ2YD98 709 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 CREBRFQ8IUR6 639 aa11.09□□□□□ -0.63
HPS4-217ENST00000496385 FKBP5Q13451 457 aaPredicted RBP11.08□□□□□ -0.64
HPS4-217ENST00000496385 DDX17Q92841 729 aaKnown RBP11.08□□□□□ -0.64
HPS4-217ENST00000496385 KIF2CQ99661 725 aa11.08□□□□□ -0.64
HPS4-217ENST00000496385 FAM135BQ49AJ0 1406 aa11.08□□□□□ -0.64
HPS4-217ENST00000496385 MBD3O95983 291 aa11.08□□□□□ -0.64
HPS4-217ENST00000496385 PTMAP06454 111 aaKnown RBP11.08□□□□□ -0.64
HPS4-217ENST00000496385 ZNF771Q7L3S4 317 aaPredicted RBP11.08□□□□□ -0.64
HPS4-217ENST00000496385 SLAIN2Q9P270 581 aa11.08□□□□□ -0.64
HPS4-217ENST00000496385 CGNQ9P2M7 1197 aaKnown RBP11.08□□□□□ -0.64
HPS4-217ENST00000496385 CT47B1P0C2W7 299 aaPredicted RBP11.07□□□□□ -0.64
HPS4-217ENST00000496385 WDR63Q8IWG1 891 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 WWC1Q8IX03 1113 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 BCL2L12Q9HB09 334 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.07□□□□□ -0.64
HPS4-217ENST00000496385 TOM1O60784 492 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 MCTP1Q6DN14 999 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 FAM184AQ8NB25 1140 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 ORAI2Q96SN7 254 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 CABP2Q9NPB3 220 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 DLC1Q96QB1 1528 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 QRICH2Q9H0J4 1663 aa11.07□□□□□ -0.64
HPS4-217ENST00000496385 BMP2KLQ5H9B9 411 aa11.06□□□□□ -0.64
HPS4-217ENST00000496385 CTIFO43310 598 aaKnown RBP11.06□□□□□ -0.64
HPS4-217ENST00000496385 SRPK2P78362 688 aaKnown RBP11.06□□□□□ -0.64
HPS4-217ENST00000496385 CHAF1AQ13111 956 aaPredicted RBP11.06□□□□□ -0.64
HPS4-217ENST00000496385 CADPS2Q86UW7 1296 aa11.06□□□□□ -0.64
HPS4-217ENST00000496385 RLBP1P12271 317 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 CDK19Q9BWU1 502 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 IRX5P78411 483 aaPredicted RBP11.05□□□□□ -0.64
HPS4-217ENST00000496385 ESCO1Q5FWF5 840 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 GAS2L2Q8NHY3 880 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 SIRT1Q96EB6 747 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 WASLO00401 505 aaPredicted RBP11.05□□□□□ -0.64
HPS4-217ENST00000496385 TPM3P06753 285 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 CCDC146Q8IYE0 955 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 TIGD1Q96MW7 591 aa11.05□□□□□ -0.64
HPS4-217ENST00000496385 RGPD8O14715 1765 aaPredicted RBP11.04□□□□□ -0.64
HPS4-217ENST00000496385 CHRM1P11229 460 aaPredicted RBP11.04□□□□□ -0.64
HPS4-217ENST00000496385 ZKSCAN2Q63HK3 967 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 TEX2Q8IWB9 1127 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 SYAP1Q96A49 352 aaPredicted RBP11.04□□□□□ -0.64
HPS4-217ENST00000496385 CALCOCO1Q9P1Z2 691 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 PRR36Q9H6K5 1346 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 RABEP1Q15276 862 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 DDX19BQ9UMR2 479 aa11.04□□□□□ -0.64
HPS4-217ENST00000496385 MST1RQ04912 1400 aa11.03□□□□□ -0.64
HPS4-217ENST00000496385 CCDC27Q2M243 656 aa11.03□□□□□ -0.64
HPS4-217ENST00000496385 PHF14O94880 888 aa11.03□□□□□ -0.64
HPS4-217ENST00000496385 NUCB1Q02818 461 aa11.03□□□□□ -0.64
HPS4-217ENST00000496385 DZIP1LQ8IYY4 767 aaKnown RBP11.03□□□□□ -0.64
HPS4-217ENST00000496385 TSPY26PQ9H489 355 aa11.03□□□□□ -0.64
HPS4-217ENST00000496385 POLR3AO14802 1390 aaPredicted RBP11.03□□□□□ -0.64
HPS4-217ENST00000496385 TULP2O00295 520 aa11.02□□□□□ -0.64
HPS4-217ENST00000496385 BRINP3Q76B58 766 aa11.02□□□□□ -0.64
HPS4-217ENST00000496385 GPT2Q8TD30 523 aa11.02□□□□□ -0.64
HPS4-217ENST00000496385 TULP4Q9NRJ4 1543 aa11.02□□□□□ -0.65
HPS4-217ENST00000496385 VGLL3A8MV65 326 aa11.02□□□□□ -0.65
HPS4-217ENST00000496385 FOXO3O43524 673 aa11.02□□□□□ -0.65
HPS4-217ENST00000496385 SLFN14P0C7P3 912 aa11.02□□□□□ -0.65
HPS4-217ENST00000496385 C1orf167Q5SNV9 1468 aa11.02□□□□□ -0.65
HPS4-217ENST00000496385 SPDYE4A6NLX3 237 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 KCNJ4P48050 445 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 IRX3P78415 501 aaPredicted RBP11.01□□□□□ -0.65
HPS4-217ENST00000496385 CDC42BPGQ6DT37 1551 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 ILDR1Q86SU0 546 aaPredicted RBP11.01□□□□□ -0.65
HPS4-217ENST00000496385 NUDT16Q96DE0 195 aaKnown RBP11.01□□□□□ -0.65
HPS4-217ENST00000496385 ROBO1Q9Y6N7 1651 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 CD2BP2O95400 341 aaKnown RBP11.01□□□□□ -0.65
HPS4-217ENST00000496385 FBXO41Q8TF61 875 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 TMEM63CQ9P1W3 806 aa11.01□□□□□ -0.65
HPS4-217ENST00000496385 MORC2Q9Y6X9 1032 aaPredicted RBP11.01□□□□□ -0.65
HPS4-217ENST00000496385 EVC2Q86UK5 1308 aa11□□□□□ -0.65
HPS4-217ENST00000496385 PRPF40AO75400 957 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms