RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PTPRGP23470 1445 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 MCCD1P59942 119 aaPredicted RBP11.01□□□□□ -0.65
VIM-207ENST00000495528 PRR20EP86478 221 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 PRR20CP86479 221 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 PRR20DP86480 221 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 PRR20BP86481 221 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 PRR20AP86496 221 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 ZNF592Q92610 1267 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 TOR4AQ9NXH8 423 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 CDV3Q9UKY7 258 aaKnown RBP11.01□□□□□ -0.65
VIM-207ENST00000495528 CARMIL1Q5VZK9 1371 aa11.01□□□□□ -0.65
VIM-207ENST00000495528 ADH1CP00326 375 aa11□□□□□ -0.65
VIM-207ENST00000495528 GRM5P41594 1212 aa11□□□□□ -0.65
VIM-207ENST00000495528 MAP4K5Q9Y4K4 846 aa11□□□□□ -0.65
VIM-207ENST00000495528 GFRA3O60609 400 aa10.99□□□□□ -0.65
VIM-207ENST00000495528 SLFNL1Q499Z3 407 aa10.99□□□□□ -0.65
VIM-207ENST00000495528 MPNDQ8N594 471 aa10.99□□□□□ -0.65
VIM-207ENST00000495528 PIK3CDO00329 1044 aa10.98□□□□□ -0.65
VIM-207ENST00000495528 INTS6LQ5JSJ4 861 aaKnown RBP10.98□□□□□ -0.65
VIM-207ENST00000495528 C1orf115Q9H7X2 142 aa10.98□□□□□ -0.65
VIM-207ENST00000495528 SMPD1P17405 629 aa10.97□□□□□ -0.65
VIM-207ENST00000495528 RNF135Q8IUD6 432 aa10.97□□□□□ -0.65
VIM-207ENST00000495528 IRX2Q9BZI1 471 aaPredicted RBP10.97□□□□□ -0.65
VIM-207ENST00000495528 TNIKQ9UKE5 1360 aa10.97□□□□□ -0.65
VIM-207ENST00000495528 FAM187AA6NFU0 413 aa10.96□□□□□ -0.65
VIM-207ENST00000495528 NR3C2P08235 984 aa10.96□□□□□ -0.65
VIM-207ENST00000495528 NNTQ13423 1086 aa10.96□□□□□ -0.65
VIM-207ENST00000495528 CUL7Q14999 1698 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 KDM6BO15054 1643 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 CARMIL2Q6F5E8 1435 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 ESPNB1AK53 854 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 NR5A1Q13285 461 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 TSGA10IPQ3SY00 556 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 UCN2Q96RP3 112 aa10.95□□□□□ -0.66
VIM-207ENST00000495528 ERVH48-1M5A8F1 160 aa10.94□□□□□ -0.66
VIM-207ENST00000495528 SKIP12755 728 aa10.94□□□□□ -0.66
VIM-207ENST00000495528 RNF20Q5VTR2 975 aa10.94□□□□□ -0.66
VIM-207ENST00000495528 ARID3AQ99856 593 aa10.94□□□□□ -0.66
VIM-207ENST00000495528 ABCC2Q92887 1545 aa10.94□□□□□ -0.66
VIM-207ENST00000495528 ASXL2Q76L83 1435 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 TBC1D9Q6ZT07 1266 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 CCDC116Q8IYX3 515 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 PHTF2Q8N3S3 785 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 CCDC82Q8N4S0 544 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 HPS1Q92902 700 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 CCDC85AQ96PX6 553 aaPredicted RBP10.93□□□□□ -0.66
VIM-207ENST00000495528 TMPRSS4Q9NRS4 437 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 PCDHB11Q9Y5F2 797 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 TSPOAP1O95153 1857 aa10.93□□□□□ -0.66
VIM-207ENST00000495528 PPP1R26Q5T8A7 1209 aaPredicted RBP10.92□□□□□ -0.66
VIM-207ENST00000495528 CCDC97Q96F63 343 aaPredicted RBP10.92□□□□□ -0.66
VIM-207ENST00000495528 NRG2O14511 850 aaPredicted RBP10.91□□□□□ -0.66
VIM-207ENST00000495528 SEPT12Q8IYM1 358 aa10.91□□□□□ -0.66
VIM-207ENST00000495528 TFIP11Q9UBB9 837 aaKnown RBP10.91□□□□□ -0.66
VIM-207ENST00000495528 PLB1Q6P1J6 1458 aa10.91□□□□□ -0.66
VIM-207ENST00000495528 UACAQ9BZF9 1416 aa10.91□□□□□ -0.66
VIM-207ENST00000495528 UHRF1BP1LA0JNW5 1464 aa10.9□□□□□ -0.66
VIM-207ENST00000495528 DHX9Q08211 1270 aaKnown RBP10.9□□□□□ -0.66
VIM-207ENST00000495528 PKDCCQ504Y2 493 aa10.9□□□□□ -0.66
VIM-207ENST00000495528 DEPDC4Q8N2C3 294 aa10.9□□□□□ -0.66
VIM-207ENST00000495528 PLPP7Q8NBV4 271 aa10.9□□□□□ -0.66
VIM-207ENST00000495528 CDCA7Q9BWT1 371 aaPredicted RBP10.9□□□□□ -0.66
VIM-207ENST00000495528 DOLKQ9UPQ8 538 aa10.9□□□□□ -0.66
VIM-207ENST00000495528 DISP1Q96F81 1524 aa10.89□□□□□ -0.67
VIM-207ENST00000495528 PALM3A6NDB9 673 aaPredicted RBP10.89□□□□□ -0.67
VIM-207ENST00000495528 WDR4P57081 412 aaKnown RBP10.89□□□□□ -0.67
VIM-207ENST00000495528 OXLD1Q5BKU9 147 aa10.89□□□□□ -0.67
VIM-207ENST00000495528 PPP1R12CQ9BZL4 782 aa10.89□□□□□ -0.67
VIM-207ENST00000495528 COL17A1Q9UMD9 1497 aaPredicted RBP10.88□□□□□ -0.67
VIM-207ENST00000495528 GLI2P10070 1586 aa10.88□□□□□ -0.67
VIM-207ENST00000495528 RFX1P22670 979 aa10.88□□□□□ -0.67
VIM-207ENST00000495528 IQGAP2Q13576 1575 aa10.88□□□□□ -0.67
VIM-207ENST00000495528 ZNF784Q8NCA9 323 aaPredicted RBP10.88□□□□□ -0.67
VIM-207ENST00000495528 ITPKCQ96DU7 683 aa10.88□□□□□ -0.67
VIM-207ENST00000495528 CYLDQ9NQC7 956 aa10.88□□□□□ -0.67
VIM-207ENST00000495528 ATP9BO43861 1147 aa10.87□□□□□ -0.67
VIM-207ENST00000495528 ZIC2O95409 532 aaPredicted RBP10.87□□□□□ -0.67
VIM-207ENST00000495528 ZFAND3Q9H8U3 227 aa10.87□□□□□ -0.67
VIM-207ENST00000495528 SERPINA10Q9UK55 444 aa10.87□□□□□ -0.67
VIM-207ENST00000495528 EMILIN1Q9Y6C2 1016 aa10.87□□□□□ -0.67
VIM-207ENST00000495528 USP17L5A8MUK1 530 aa10.86□□□□□ -0.67
VIM-207ENST00000495528 LMOD1P29536 600 aaPredicted RBP10.86□□□□□ -0.67
VIM-207ENST00000495528 PGPEP1Q9NXJ5 209 aa10.86□□□□□ -0.67
VIM-207ENST00000495528 RAPGEF2Q9Y4G8 1499 aa10.86□□□□□ -0.67
VIM-207ENST00000495528 EPRSP07814 1512 aaKnown RBP10.85□□□□□ -0.67
VIM-207ENST00000495528 KDM5BQ9UGL1 1544 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 TIMP2P16035 220 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 SCTRP47872 440 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 NCOA4Q13772 614 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 LAPTM4AQ15012 233 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 NFATC2IPQ8NCF5 419 aa10.85□□□□□ -0.67
VIM-207ENST00000495528 PPRC1Q5VV67 1664 aaKnown RBP10.85□□□□□ -0.67
VIM-207ENST00000495528 DGAT1O75907 488 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 MYT1Q01538 1121 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 CBLBQ13191 982 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 MAP7D1Q3KQU3 841 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 TRAF7Q6Q0C0 670 aa10.84□□□□□ -0.67
VIM-207ENST00000495528 KLF16Q9BXK1 252 aaPredicted RBP10.84□□□□□ -0.67
VIM-207ENST00000495528 ESF1Q9H501 851 aaKnown RBP10.84□□□□□ -0.67
VIM-207ENST00000495528 CHIC2Q9UKJ5 165 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms