RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 CAMTA1Q9Y6Y1 1673 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 NEFMP07197 916 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 RARSP54136 660 aaKnown RBP8.85□□□□□ -0.99
MSH5-217ENST00000494458 XPCQ01831 940 aaPredicted RBP8.85□□□□□ -0.99
MSH5-217ENST00000494458 NEUROD2Q15784 382 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 CFAP44Q96MT7 982 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 PLSCR2Q9NRY7 297 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 IFT57Q9NWB7 429 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 SSUH2Q9Y2M2 353 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 AXIN2Q9Y2T1 843 aa8.85□□□□□ -0.99
MSH5-217ENST00000494458 FANCIQ9NVI1 1328 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 NHSL1Q5SYE7 1610 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 LTN1O94822 1766 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 CHL1O00533 1208 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 CRB1P82279 1406 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 MTHFSDQ2M296 383 aaKnown RBP8.84□□□□□ -0.99
MSH5-217ENST00000494458 NBPF6Q5VWK0 638 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 DDX17Q92841 729 aaKnown RBP8.84□□□□□ -0.99
MSH5-217ENST00000494458 NBPF4Q96M43 638 aa8.84□□□□□ -0.99
MSH5-217ENST00000494458 GNAI1P63096 354 aa8.83□□□□□ -1
MSH5-217ENST00000494458 PDE3AQ14432 1141 aa8.83□□□□□ -1
MSH5-217ENST00000494458 CHADLQ6NUI6 762 aa8.83□□□□□ -1
MSH5-217ENST00000494458 GAS2L2Q8NHY3 880 aa8.83□□□□□ -1
MSH5-217ENST00000494458 BABAM1Q9NWV8 329 aa8.83□□□□□ -1
MSH5-217ENST00000494458 ERBB3P21860 1342 aa8.82□□□□□ -1
MSH5-217ENST00000494458 SOX12O15370 315 aa8.82□□□□□ -1
MSH5-217ENST00000494458 ALDH1L2Q3SY69 923 aa8.82□□□□□ -1
MSH5-217ENST00000494458 CEMIPQ8WUJ3 1361 aa8.82□□□□□ -1
MSH5-217ENST00000494458 DLG5Q8TDM6 1919 aa8.82□□□□□ -1
MSH5-217ENST00000494458 AHDC1Q5TGY3 1603 aaPredicted RBP8.81□□□□□ -1
MSH5-217ENST00000494458 VAMP4O75379 141 aa8.81□□□□□ -1
MSH5-217ENST00000494458 BCAR3O75815 825 aa8.81□□□□□ -1
MSH5-217ENST00000494458 ATXN8OSP0DMR3 200 aa8.81□□□□□ -1
MSH5-217ENST00000494458 EXOSC9Q06265 439 aaKnown RBP8.81□□□□□ -1
MSH5-217ENST00000494458 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.81□□□□□ -1
MSH5-217ENST00000494458 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.81□□□□□ -12e-11■□□□□ 11.3
MSH5-217ENST00000494458 KIAA0232Q92628 1395 aa8.81□□□□□ -1
MSH5-217ENST00000494458 IRX6P78412 446 aaPredicted RBP8.8□□□□□ -1
MSH5-217ENST00000494458 MKRN4PQ13434 485 aaPredicted RBP8.8□□□□□ -1
MSH5-217ENST00000494458 AAMPQ13685 434 aa8.8□□□□□ -1
MSH5-217ENST00000494458 AMOTQ4VCS5 1084 aa8.8□□□□□ -1
MSH5-217ENST00000494458 ANKRD24Q8TF21 1146 aa8.8□□□□□ -1
MSH5-217ENST00000494458 MBIPQ9NS73 344 aa8.8□□□□□ -1
MSH5-217ENST00000494458 LRRC37A3O60309 1634 aa8.8□□□□□ -1
MSH5-217ENST00000494458 OVOS2A0A0G2JMS6 1433 aa8.8□□□□□ -1
MSH5-217ENST00000494458 FAM83GA6ND36 823 aa8.79□□□□□ -1
MSH5-217ENST00000494458 PLIN1O60240 522 aa8.79□□□□□ -1
MSH5-217ENST00000494458 C20orf194Q5TEA3 1177 aa8.79□□□□□ -1
MSH5-217ENST00000494458 IL17REQ8NFR9 667 aa8.79□□□□□ -1
MSH5-217ENST00000494458 TSR2Q969E8 191 aaKnown RBP8.79□□□□□ -1
MSH5-217ENST00000494458 SOS1Q07889 1333 aaPredicted RBP8.79□□□□□ -1
MSH5-217ENST00000494458 ADAMTS7Q9UKP4 1686 aa8.78□□□□□ -1
MSH5-217ENST00000494458 GNAT3A8MTJ3 354 aa8.78□□□□□ -1
MSH5-217ENST00000494458 ZC3H6P61129 1189 aaKnown RBP8.78□□□□□ -1
MSH5-217ENST00000494458 EXOC6Q8TAG9 804 aa8.78□□□□□ -1
MSH5-217ENST00000494458 SSH1Q8WYL5 1049 aa8.78□□□□□ -1
MSH5-217ENST00000494458 ARHGAP45Q92619 1136 aa8.78□□□□□ -1
MSH5-217ENST00000494458 LRRC59Q96AG4 307 aaKnown RBP8.78□□□□□ -1
MSH5-217ENST00000494458 THUMPD2Q9BTF0 503 aaKnown RBP8.78□□□□□ -1
MSH5-217ENST00000494458 FAM208AQ9UK61 1670 aaKnown RBP8.78□□□□□ -1
MSH5-217ENST00000494458 COL22A1Q8NFW1 1626 aaPredicted RBP8.77□□□□□ -1.01
MSH5-217ENST00000494458 MAP3K5Q99683 1374 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 DCTN1Q14203 1278 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 PLEKHO1Q53GL0 409 aaPredicted RBP8.77□□□□□ -1.01
MSH5-217ENST00000494458 AKAP4Q5JQC9 854 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 LMOD2Q6P5Q4 547 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 MCM10Q7L590 875 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 CABLES1Q8TDN4 633 aa8.77□□□□□ -1.01
MSH5-217ENST00000494458 ZBTB22O15209 634 aa8.76□□□□□ -1.01
MSH5-217ENST00000494458 MRPL50Q8N5N7 158 aaKnown RBP8.76□□□□□ -1.01
MSH5-217ENST00000494458 TSPYL6Q8N831 410 aa8.76□□□□□ -1.01
MSH5-217ENST00000494458 C8orf58Q8NAV2 365 aa8.76□□□□□ -1.01
MSH5-217ENST00000494458 LTV1Q96GA3 475 aaPredicted RBP8.76□□□□□ -1.01
MSH5-217ENST00000494458 CRBNQ96SW2 442 aa8.76□□□□□ -1.01
MSH5-217ENST00000494458 ABCA3Q99758 1704 aa8.76□□□□□ -1.01
MSH5-217ENST00000494458 HEG1Q9ULI3 1381 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 MS4A1P11836 297 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 HAP1P54257 671 aaPredicted RBP8.75□□□□□ -1.01
MSH5-217ENST00000494458 TAF7Q15545 349 aaPredicted RBP8.75□□□□□ -1.01
MSH5-217ENST00000494458 USHBP1Q8N6Y0 703 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 RTF1Q92541 710 aaKnown RBP8.75□□□□□ -1.01
MSH5-217ENST00000494458 RGPD2P0DJD1 1756 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 COL5A2P05997 1499 aaPredicted RBP8.75□□□□□ -1.01
MSH5-217ENST00000494458 WDR17Q8IZU2 1322 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 ROBO1Q9Y6N7 1651 aa8.75□□□□□ -1.01
MSH5-217ENST00000494458 RGPD5Q99666 1765 aa8.74□□□□□ -1.01
MSH5-217ENST00000494458 RLBP1P12271 317 aa8.74□□□□□ -1.01
MSH5-217ENST00000494458 TWISTNBQ3B726 338 aaPredicted RBP8.74□□□□□ -1.01
MSH5-217ENST00000494458 ZKSCAN2Q63HK3 967 aa8.74□□□□□ -1.01
MSH5-217ENST00000494458 KDM2BQ8NHM5 1336 aa8.74□□□□□ -1.01
MSH5-217ENST00000494458 KIF16BQ96L93 1317 aa8.74□□□□□ -1.01
MSH5-217ENST00000494458 IPO8O15397 1037 aaKnown RBP8.73□□□□□ -1.01
MSH5-217ENST00000494458 RNMTO43148 476 aaKnown RBP8.73□□□□□ -1.01
MSH5-217ENST00000494458 TRIM27P14373 513 aa8.73□□□□□ -1.01
MSH5-217ENST00000494458 CLCN6P51797 869 aa8.73□□□□□ -1.01
MSH5-217ENST00000494458 NKX1-1Q15270 411 aaPredicted RBP8.73□□□□□ -1.01
MSH5-217ENST00000494458 B4GALNT3Q6L9W6 998 aa8.73□□□□□ -1.01
MSH5-217ENST00000494458 ATF7IPQ6VMQ6 1270 aa8.73□□□□□ -1.01
MSH5-217ENST00000494458 CARD10Q9BWT7 1032 aa8.73□□□□□ -1.01
MSH5-217ENST00000494458 LGR6Q9HBX8 967 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms