RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 NUCB1Q02818 461 aa14.38□□□□□ -0.11
RFC4-214ENST00000494047 SKAP1Q86WV1 359 aa14.38□□□□□ -0.11
RFC4-214ENST00000494047 SNX21Q969T3 373 aa14.38□□□□□ -0.11
RFC4-214ENST00000494047 RGS17Q9UGC6 210 aaPredicted RBP14.38□□□□□ -0.11
RFC4-214ENST00000494047 NUTM2BA6NNL0 878 aaPredicted RBP14.37□□□□□ -0.11
RFC4-214ENST00000494047 NUTM2EB1AL46 878 aaPredicted RBP14.37□□□□□ -0.11
RFC4-214ENST00000494047 RBM25P49756 843 aaKnown RBP14.37□□□□□ -0.11
RFC4-214ENST00000494047 KRT28Q7Z3Y7 464 aa14.37□□□□□ -0.11
RFC4-214ENST00000494047 NUTM2AQ8IVF1 878 aaPredicted RBP14.37□□□□□ -0.11
RFC4-214ENST00000494047 BCL2L13Q9BXK5 485 aa14.37□□□□□ -0.11
RFC4-214ENST00000494047 CABP1Q9NZU7 370 aa14.37□□□□□ -0.11
RFC4-214ENST00000494047 NOB1Q9ULX3 412 aaKnown RBP14.37□□□□□ -0.11
RFC4-214ENST00000494047 TOPAZ1Q8N9V7 1692 aa14.37□□□□□ -0.11
RFC4-214ENST00000494047 TSR2Q969E8 191 aaKnown RBP14.36□□□□□ -0.11
RFC4-214ENST00000494047 COG3Q96JB2 828 aa14.36□□□□□ -0.11
RFC4-214ENST00000494047 ANTXR1Q9H6X2 564 aa14.36□□□□□ -0.11
RFC4-214ENST00000494047 SBNO1A3KN83 1393 aa14.36□□□□□ -0.11
RFC4-214ENST00000494047 ABCC4O15439 1325 aa14.36□□□□□ -0.11
RFC4-214ENST00000494047 SPATA31A3Q5VYP0 1347 aa14.36□□□□□ -0.11
RFC4-214ENST00000494047 PRKAR2BP31323 418 aa14.35□□□□□ -0.11
RFC4-214ENST00000494047 POLKQ9UBT6 870 aa14.35□□□□□ -0.11
RFC4-214ENST00000494047 CCDC61Q9Y6R9 512 aa14.35□□□□□ -0.11
RFC4-214ENST00000494047 FRAT2O75474 233 aaPredicted RBP14.34□□□□□ -0.11
RFC4-214ENST00000494047 CHD1LQ86WJ1 897 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 TMEM57Q8N5G2 664 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 TBC1D2Q9BYX2 928 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 KIAA0232Q92628 1395 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 TTC21BQ7Z4L5 1316 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 ZNF853P0CG23 659 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 SLC4A3P48751 1232 aa14.34□□□□□ -0.11
RFC4-214ENST00000494047 NUDT16Q96DE0 195 aaKnown RBP14.34□□□□□ -0.11
RFC4-214ENST00000494047 DLG5Q8TDM6 1919 aa14.33□□□□□ -0.11
RFC4-214ENST00000494047 ARHGEF10O15013 1369 aa14.33□□□□□ -0.11
RFC4-214ENST00000494047 SOS1Q07889 1333 aaPredicted RBP14.33□□□□□ -0.12
RFC4-214ENST00000494047 PRR36Q9H6K5 1346 aa14.33□□□□□ -0.12
RFC4-214ENST00000494047 TNS3Q68CZ2 1445 aa14.33□□□□□ -0.12
RFC4-214ENST00000494047 XPCQ01831 940 aaPredicted RBP14.33□□□□□ -0.12
RFC4-214ENST00000494047 NGDNQ8NEJ9 315 aaKnown RBP14.33□□□□□ -0.12
RFC4-214ENST00000494047 IL13P35225 146 aa14.32□□□□□ -0.12
RFC4-214ENST00000494047 SKOR2Q2VWA4 1001 aaPredicted RBP14.32□□□□□ -0.12
RFC4-214ENST00000494047 POTEAQ6S8J7 498 aa14.32□□□□□ -0.12
RFC4-214ENST00000494047 GBP4Q96PP9 640 aa14.32□□□□□ -0.12
RFC4-214ENST00000494047 PTPRCP08575 1304 aa14.31□□□□□ -0.12
RFC4-214ENST00000494047 FAM43AQ8N2R8 423 aa14.31□□□□□ -0.12
RFC4-214ENST00000494047 MRPL50Q8N5N7 158 aaKnown RBP14.31□□□□□ -0.12
RFC4-214ENST00000494047 NGLY1Q96IV0 654 aa14.31□□□□□ -0.12
RFC4-214ENST00000494047 C8orf37Q96NL8 207 aa14.31□□□□□ -0.12
RFC4-214ENST00000494047 AFF2P51816 1311 aa14.3□□□□□ -0.12
RFC4-214ENST00000494047 PLEKHG3A1L390 1219 aa14.3□□□□□ -0.12
RFC4-214ENST00000494047 VAMP4O75379 141 aa14.3□□□□□ -0.12
RFC4-214ENST00000494047 SEC24BO95487 1268 aa14.3□□□□□ -0.12
RFC4-214ENST00000494047 CASC1Q6TDU7 716 aa14.3□□□□□ -0.12
RFC4-214ENST00000494047 MARF1Q9Y4F3 1742 aaKnown RBP14.29□□□□□ -0.12
RFC4-214ENST00000494047 ZBTB7BO15156 539 aaPredicted RBP14.29□□□□□ -0.12
RFC4-214ENST00000494047 ADAMTS2O95450 1211 aa14.29□□□□□ -0.12
RFC4-214ENST00000494047 MFAP1P55081 439 aaKnown RBP14.29□□□□□ -0.12
RFC4-214ENST00000494047 TWISTNBQ3B726 338 aaPredicted RBP14.29□□□□□ -0.12
RFC4-214ENST00000494047 FNBP4Q8N3X1 1017 aaPredicted RBP14.29□□□□□ -0.12
RFC4-214ENST00000494047 CHMP4AQ9BY43 222 aa14.29□□□□□ -0.12
RFC4-214ENST00000494047 TTC21AQ8NDW8 1320 aa14.29□□□□□ -0.12
RFC4-214ENST00000494047 RGPD1P0DJD0 1748 aa14.28□□□□□ -0.12
RFC4-214ENST00000494047 RPAP2Q8IXW5 612 aaPredicted RBP14.28□□□□□ -0.12
RFC4-214ENST00000494047 OVOS2A0A0J9YW53 1432 aa14.28□□□□□ -0.12
RFC4-214ENST00000494047 OVOS2Q6IE36 1432 aa14.28□□□□□ -0.12
RFC4-214ENST00000494047 CACNA1FO60840 1977 aa14.28□□□□□ -0.12
RFC4-214ENST00000494047 GOLGA6L22H0YM25 854 aa14.27□□□□□ -0.12
RFC4-214ENST00000494047 CDC45O75419 566 aa14.27□□□□□ -0.12
RFC4-214ENST00000494047 RXRBP28702 533 aa14.27□□□□□ -0.12
RFC4-214ENST00000494047 MCM4P33991 863 aa14.27□□□□□ -0.12
RFC4-214ENST00000494047 SLKQ9H2G2 1235 aaPredicted RBP14.27□□□□□ -0.12
RFC4-214ENST00000494047 TNNQ9UQP3 1299 aa14.27□□□□□ -0.12
RFC4-214ENST00000494047 TRPM3Q9HCF6 1732 aaPredicted RBP14.27□□□□□ -0.13
RFC4-214ENST00000494047 USP54Q70EL1 1684 aa14.26□□□□□ -0.13
RFC4-214ENST00000494047 LMOD2Q6P5Q4 547 aa14.26□□□□□ -0.13
RFC4-214ENST00000494047 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.26□□□□□ -0.13
RFC4-214ENST00000494047 USP31Q70CQ4 1352 aa14.26□□□□□ -0.13
RFC4-214ENST00000494047 GOLGA6L3A6NEY3 463 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 HMMRO75330 724 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 INTS3Q68E01 1043 aaKnown RBP14.25□□□□□ -0.13
RFC4-214ENST00000494047 QTRT2Q9H974 415 aaKnown RBP14.25□□□□□ -0.13
RFC4-214ENST00000494047 USP21Q9UK80 565 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 TRPC5Q9UL62 973 aaPredicted RBP14.25□□□□□ -0.13
RFC4-214ENST00000494047 ALS2Q96Q42 1657 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 ACEP12821 1306 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 RTL1A6NKG5 1358 aa14.25□□□□□ -0.13
RFC4-214ENST00000494047 RBM6P78332 1123 aaKnown RBP14.24□□□□□ -0.13
RFC4-214ENST00000494047 MBIPQ9NS73 344 aa14.24□□□□□ -0.13
RFC4-214ENST00000494047 USP6P35125 1406 aa14.24□□□□□ -0.13
RFC4-214ENST00000494047 N4BP2Q86UW6 1770 aaPredicted RBP14.23□□□□□ -0.13
RFC4-214ENST00000494047 HTATSF1O43719 755 aaKnown RBP14.23□□□□□ -0.13
RFC4-214ENST00000494047 HSP90AB1P08238 724 aaKnown RBP14.23□□□□□ -0.13
RFC4-214ENST00000494047 RABEP1Q15276 862 aa14.23□□□□□ -0.13
RFC4-214ENST00000494047 MRE11P49959 708 aa14.22□□□□□ -0.13
RFC4-214ENST00000494047 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
RFC4-214ENST00000494047 IBTKQ9P2D0 1353 aaPredicted RBP14.22□□□□□ -0.13
RFC4-214ENST00000494047 HSP90AA1P07900 732 aaKnown RBP14.22□□□□□ -0.13
RFC4-214ENST00000494047 ANKRD45Q5TZF3 282 aa14.22□□□□□ -0.13
RFC4-214ENST00000494047 LNPKQ9C0E8 428 aa14.22□□□□□ -0.13
RFC4-214ENST00000494047 DCTPP1Q9H773 170 aa14.22□□□□□ -0.13
RFC4-214ENST00000494047 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms