RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 KCTD17Q8N5Z5 321 aa10.39□□□□□ -0.75
SMC4-223ENST00000493695 KDF1Q8NAX2 398 aaPredicted RBP10.39□□□□□ -0.75
SMC4-223ENST00000493695 NLRP3Q96P20 1036 aa10.39□□□□□ -0.75
SMC4-223ENST00000493695 ZNF330Q9Y3S2 320 aaPredicted RBP10.39□□□□□ -0.75
SMC4-223ENST00000493695 MARSP56192 900 aaKnown RBP10.38□□□□□ -0.75
SMC4-223ENST00000493695 KCNMA1Q12791 1236 aa10.38□□□□□ -0.75
SMC4-223ENST00000493695 WHAMMQ8TF30 809 aa10.38□□□□□ -0.75
SMC4-223ENST00000493695 A0A1W2PRU2 124 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 GDF11O95390 407 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 RNF144AP50876 292 aaPredicted RBP10.37□□□□□ -0.75
SMC4-223ENST00000493695 MAP3K10Q02779 954 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 CC2D2BQ6DHV5 1058 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 FOXR1Q6PIV2 292 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 GJD4Q96KN9 370 aaPredicted RBP10.37□□□□□ -0.75
SMC4-223ENST00000493695 GAS2L1Q99501 681 aaPredicted RBP10.37□□□□□ -0.75
SMC4-223ENST00000493695 PCDHB11Q9Y5F2 797 aa10.37□□□□□ -0.75
SMC4-223ENST00000493695 ADAMTS2O95450 1211 aa10.36□□□□□ -0.75
SMC4-223ENST00000493695 RASSF7Q02833 373 aa10.35□□□□□ -0.75
SMC4-223ENST00000493695 CUEDC1Q9NWM3 386 aaPredicted RBP10.35□□□□□ -0.75
SMC4-223ENST00000493695 GPR25O00155 361 aa10.34□□□□□ -0.75
SMC4-223ENST00000493695 POU4F2Q12837 409 aa10.34□□□□□ -0.75
SMC4-223ENST00000493695 NR1H3Q13133 447 aa10.34□□□□□ -0.75
SMC4-223ENST00000493695 CYP2U1Q7Z449 544 aa10.34□□□□□ -0.75
SMC4-223ENST00000493695 ZNF592Q92610 1267 aa10.34□□□□□ -0.75
SMC4-223ENST00000493695 SLURP2P0DP57 97 aa10.33□□□□□ -0.76
SMC4-223ENST00000493695 IRS1P35568 1242 aa10.33□□□□□ -0.76
SMC4-223ENST00000493695 NDUFB9Q9Y6M9 179 aa10.33□□□□□ -0.76
SMC4-223ENST00000493695 ERVK-9P63128 1117 aa10.32□□□□□ -0.76
SMC4-223ENST00000493695 CCDC125Q86Z20 511 aa10.32□□□□□ -0.76
SMC4-223ENST00000493695 ARHGEF10LQ9HCE6 1279 aa10.32□□□□□ -0.76
SMC4-223ENST00000493695 APBB1O00213 710 aa10.31□□□□□ -0.76
SMC4-223ENST00000493695 SCTRP47872 440 aa10.31□□□□□ -0.76
SMC4-223ENST00000493695 MCCD1P59942 119 aaPredicted RBP10.31□□□□□ -0.76
SMC4-223ENST00000493695 ZNF837Q96EG3 531 aaPredicted RBP10.31□□□□□ -0.76
SMC4-223ENST00000493695 GPC1P35052 558 aa10.3□□□□□ -0.76
SMC4-223ENST00000493695 BRPF1P55201 1214 aaPredicted RBP10.3□□□□□ -0.76
SMC4-223ENST00000493695 SRSF11Q05519 484 aaKnown RBP10.3□□□□□ -0.76
SMC4-223ENST00000493695 LYPD4Q6UWN0 246 aa10.3□□□□□ -0.76
SMC4-223ENST00000493695 TRIM22Q8IYM9 498 aa10.3□□□□□ -0.76
SMC4-223ENST00000493695 RAB6BQ9NRW1 208 aa10.3□□□□□ -0.76
SMC4-223ENST00000493695 GTPBP3Q969Y2 492 aaKnown RBP10.29□□□□□ -0.76
SMC4-223ENST00000493695 TRERF1Q96PN7 1200 aa10.29□□□□□ -0.76
SMC4-223ENST00000493695 ENAMQ9NRM1 1142 aa10.29□□□□□ -0.76
SMC4-223ENST00000493695 H7C1W4 665 aa10.28□□□□□ -0.76
SMC4-223ENST00000493695 GAS6Q14393 721 aa10.28□□□□□ -0.76
SMC4-223ENST00000493695 DBN1Q16643 649 aa10.28□□□□□ -0.76
SMC4-223ENST00000493695 BANK1Q8NDB2 785 aa10.28□□□□□ -0.76
SMC4-223ENST00000493695 SCARF2Q96GP6 870 aaPredicted RBP10.28□□□□□ -0.76
SMC4-223ENST00000493695 DYRK1BQ9Y463 629 aa10.28□□□□□ -0.76
SMC4-223ENST00000493695 MYCP01106 439 aaPredicted RBP10.27□□□□□ -0.77
SMC4-223ENST00000493695 GSK3AP49840 483 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 CLN3Q13286 438 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 MTMR14Q8NCE2 650 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 GMCL1Q96IK5 515 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 TIMMDC1Q9NPL8 285 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 SNRKQ9NRH2 765 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 MBIPQ9NS73 344 aa10.27□□□□□ -0.77
SMC4-223ENST00000493695 CELA2BP08218 269 aaPredicted RBP10.26□□□□□ -0.77
SMC4-223ENST00000493695 GTF2E1P29083 439 aaPredicted RBP10.26□□□□□ -0.77
SMC4-223ENST00000493695 NBPF10Q6P3W6 841 aaKnown RBP10.26□□□□□ -0.77
SMC4-223ENST00000493695 NBPF15Q8N660 670 aa10.26□□□□□ -0.77
SMC4-223ENST00000493695 ARHGEF15O94989 841 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 GPAT2Q6NUI2 795 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 TAS1R3Q7RTX0 852 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 NEDD1Q8NHV4 660 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 OSBPL3Q9H4L5 887 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 IGF1RP08069 1367 aa10.25□□□□□ -0.77
SMC4-223ENST00000493695 PHKA2P46019 1235 aa10.24□□□□□ -0.77
SMC4-223ENST00000493695 GPAMQ9HCL2 828 aa10.24□□□□□ -0.77
SMC4-223ENST00000493695 WASLO00401 505 aaPredicted RBP10.23□□□□□ -0.77
SMC4-223ENST00000493695 CNKSR1Q969H4 720 aa10.23□□□□□ -0.77
SMC4-223ENST00000493695 GRIP2Q9C0E4 1043 aa10.23□□□□□ -0.77
SMC4-223ENST00000493695 NUCKS1Q9H1E3 243 aaKnown RBP10.23□□□□□ -0.77
SMC4-223ENST00000493695 PRM3Q9NNZ6 103 aa10.23□□□□□ -0.77
SMC4-223ENST00000493695 MX2P20592 715 aa10.22□□□□□ -0.77
SMC4-223ENST00000493695 NSFL1CQ9UNZ2 370 aaKnown RBP10.22□□□□□ -0.77
SMC4-223ENST00000493695 GNRH1P01148 92 aa10.21□□□□□ -0.77
SMC4-223ENST00000493695 F11P03951 625 aa10.21□□□□□ -0.77
SMC4-223ENST00000493695 TMEM214Q6NUQ4 689 aaKnown RBP10.21□□□□□ -0.77
SMC4-223ENST00000493695 KANK3Q6NY19 840 aa10.21□□□□□ -0.77
SMC4-223ENST00000493695 PODNQ7Z5L7 613 aa10.21□□□□□ -0.77
SMC4-223ENST00000493695 CDCA7Q9BWT1 371 aaPredicted RBP10.21□□□□□ -0.77
SMC4-223ENST00000493695 CEP126Q9P2H0 1117 aa10.21□□□□□ -0.77
SMC4-223ENST00000493695 TRAK2O60296 914 aa10.2□□□□□ -0.78
SMC4-223ENST00000493695 CENPCQ03188 943 aa10.2□□□□□ -0.78
SMC4-223ENST00000493695 SUZ12Q15022 739 aaKnown RBP10.2□□□□□ -0.78
SMC4-223ENST00000493695 ZSCAN10Q96SZ4 725 aaPredicted RBP10.2□□□□□ -0.78
SMC4-223ENST00000493695 GNASQ5JWF2 1037 aa10.19□□□□□ -0.78
SMC4-223ENST00000493695 ESYT1Q9BSJ8 1104 aa10.19□□□□□ -0.78
SMC4-223ENST00000493695 TBC1D2BQ9UPU7 963 aa10.19□□□□□ -0.78
SMC4-223ENST00000493695 DNMT3AQ9Y6K1 912 aaPredicted RBP10.19□□□□□ -0.78
SMC4-223ENST00000493695 SPATA31C2B4DYI2 1134 aa10.18□□□□□ -0.78
SMC4-223ENST00000493695 BCRP11274 1271 aa10.18□□□□□ -0.78
SMC4-223ENST00000493695 EIF4G2P78344 907 aaKnown RBP eCLIP10.18□□□□□ -0.78
SMC4-223ENST00000493695 SLFNL1Q499Z3 407 aa10.18□□□□□ -0.78
SMC4-223ENST00000493695 TPRNQ4KMQ1 711 aa10.18□□□□□ -0.78
SMC4-223ENST00000493695 CCDC85AQ96PX6 553 aaPredicted RBP10.18□□□□□ -0.78
SMC4-223ENST00000493695 CNTNAP5Q8WYK1 1306 aa10.17□□□□□ -0.78
SMC4-223ENST00000493695 GPR37L1O60883 481 aa10.17□□□□□ -0.78
SMC4-223ENST00000493695 IL2RAP01589 272 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms