RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SMC4Q9NTJ3 1288 aa13.74□□□□□ -0.21
USP4-214ENST00000491791 DDX19BQ9UMR2 479 aa13.74□□□□□ -0.21
USP4-214ENST00000491791 KIAA0232Q92628 1395 aa13.73□□□□□ -0.21
USP4-214ENST00000491791 MAP3K19Q56UN5 1328 aa13.73□□□□□ -0.21
USP4-214ENST00000491791 IGSF1Q8N6C5 1336 aa13.73□□□□□ -0.21
USP4-214ENST00000491791 HTATSF1O43719 755 aaKnown RBP13.73□□□□□ -0.21
USP4-214ENST00000491791 TRIM27P14373 513 aa13.73□□□□□ -0.21
USP4-214ENST00000491791 HAP1P54257 671 aaPredicted RBP13.73□□□□□ -0.21
USP4-214ENST00000491791 FNBP4Q8N3X1 1017 aaPredicted RBP13.73□□□□□ -0.21
USP4-214ENST00000491791 ANP32EQ9BTT0 268 aa13.73□□□□□ -0.21
USP4-214ENST00000491791 ANP32AP39687 249 aaKnown RBP13.72□□□□□ -0.21
USP4-214ENST00000491791 HDAC1Q13547 482 aaPredicted RBP13.72□□□□□ -0.21
USP4-214ENST00000491791 HSP90AB2PQ58FF8 381 aa13.72□□□□□ -0.21
USP4-214ENST00000491791 CHMP4BQ9H444 224 aaKnown RBP13.72□□□□□ -0.21
USP4-214ENST00000491791 RWDD1Q9H446 243 aaPredicted RBP13.72□□□□□ -0.21
USP4-214ENST00000491791 FAM161AQ3B820 660 aa13.71□□□□□ -0.21
USP4-214ENST00000491791 SULT6B1Q6IMI4 303 aa13.71□□□□□ -0.21
USP4-214ENST00000491791 IPO9Q96P70 1041 aaKnown RBP13.71□□□□□ -0.21
USP4-214ENST00000491791 PHF8Q9UPP1 1060 aa13.71□□□□□ -0.21
USP4-214ENST00000491791 PCDHB15Q9Y5E8 787 aa13.71□□□□□ -0.21
USP4-214ENST00000491791 CHL1O00533 1208 aa13.7□□□□□ -0.22
USP4-214ENST00000491791 FOXO3O43524 673 aa13.7□□□□□ -0.22
USP4-214ENST00000491791 FTSJ3Q8IY81 847 aaKnown RBP13.7□□□□□ -0.22
USP4-214ENST00000491791 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
USP4-214ENST00000491791 MBIPQ9NS73 344 aa13.7□□□□□ -0.22
USP4-214ENST00000491791 COL22A1Q8NFW1 1626 aaPredicted RBP13.7□□□□□ -0.22
USP4-214ENST00000491791 ZBTB40Q9NUA8 1239 aa13.69□□□□□ -0.22
USP4-214ENST00000491791 NOB1Q9ULX3 412 aaKnown RBP13.69□□□□□ -0.22
USP4-214ENST00000491791 TNNQ9UQP3 1299 aa13.69□□□□□ -0.22
USP4-214ENST00000491791 ATRNO75882 1429 aa13.69□□□□□ -0.22
USP4-214ENST00000491791 CRB1P82279 1406 aa13.69□□□□□ -0.22
USP4-214ENST00000491791 NFAT5O94916 1531 aa13.69□□□□□ -0.22
USP4-214ENST00000491791 NUTM2FA1L443 756 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 C8orf34Q49A92 452 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 AEBP1Q8IUX7 1158 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 BCL2L13Q9BXK5 485 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 BABAM1Q9NWV8 329 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 LRRC37A3O60309 1634 aa13.68□□□□□ -0.22
USP4-214ENST00000491791 PXDNQ92626 1479 aa13.67□□□□□ -0.22
USP4-214ENST00000491791 VIRMAQ69YN4 1812 aaKnown RBP13.67□□□□□ -0.22
USP4-214ENST00000491791 NLRP6P59044 892 aa13.67□□□□□ -0.22
USP4-214ENST00000491791 XPCQ01831 940 aaPredicted RBP13.67□□□□□ -0.22
USP4-214ENST00000491791 CCDC125Q86Z20 511 aa13.67□□□□□ -0.22
USP4-214ENST00000491791 ABCC4O15439 1325 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 SOS1Q07889 1333 aaPredicted RBP13.66□□□□□ -0.22
USP4-214ENST00000491791 SLIT3O75094 1523 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 HOXC9P31274 260 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 TWISTNBQ3B726 338 aaPredicted RBP13.66□□□□□ -0.22
USP4-214ENST00000491791 SMC5Q8IY18 1101 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 GAS2L2Q8NHY3 880 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 KIF1AQ12756 1690 aa13.66□□□□□ -0.22
USP4-214ENST00000491791 AMPHP49418 695 aa13.65□□□□□ -0.22
USP4-214ENST00000491791 TMEM57Q8N5G2 664 aa13.65□□□□□ -0.22
USP4-214ENST00000491791 GJD4Q96KN9 370 aaPredicted RBP13.65□□□□□ -0.22
USP4-214ENST00000491791 EYA1Q99502 592 aa13.65□□□□□ -0.22
USP4-214ENST00000491791 THUMPD2Q9BTF0 503 aaKnown RBP13.65□□□□□ -0.22
USP4-214ENST00000491791 NCAPD2Q15021 1401 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 BCL9LQ86UU0 1499 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 PSME1Q06323 249 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 TSPYL6Q8N831 410 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 C8orf58Q8NAV2 365 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 KCNH5Q8NCM2 988 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 IP6K1Q92551 441 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 API5Q9BZZ5 524 aaKnown RBP13.64□□□□□ -0.23
USP4-214ENST00000491791 SRCAPQ6ZRS2 3230 aa13.64□□□□□ -0.23
USP4-214ENST00000491791 ZBTB7BO15156 539 aaPredicted RBP13.63□□□□□ -0.23
USP4-214ENST00000491791 UNC5CLQ8IV45 518 aa13.63□□□□□ -0.23
USP4-214ENST00000491791 ABTB2Q8N961 1025 aa13.63□□□□□ -0.23
USP4-214ENST00000491791 NOP58Q9Y2X3 529 aaKnown RBP13.63□□□□□ -0.23
USP4-214ENST00000491791 SPATA31A3Q5VYP0 1347 aa13.63□□□□□ -0.23
USP4-214ENST00000491791 TRPM3Q9HCF6 1732 aaPredicted RBP13.62□□□□□ -0.23
USP4-214ENST00000491791 FAM83GA6ND36 823 aa13.62□□□□□ -0.23
USP4-214ENST00000491791 MTHFSDQ2M296 383 aaKnown RBP13.62□□□□□ -0.23
USP4-214ENST00000491791 KRT28Q7Z3Y7 464 aa13.62□□□□□ -0.23
USP4-214ENST00000491791 LTN1O94822 1766 aa13.62□□□□□ -0.23
USP4-214ENST00000491791 SKAP1Q86WV1 359 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 ITPRIPQ8IWB1 547 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 DDRGK1Q96HY6 314 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 PDZRN3Q9UPQ7 1066 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
USP4-214ENST00000491791 EP400Q96L91 3159 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 USP19O94966 1318 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 PTPRCP08575 1304 aa13.61□□□□□ -0.23
USP4-214ENST00000491791 INTS3Q68E01 1043 aaKnown RBP13.6□□□□□ -0.23
USP4-214ENST00000491791 CAMTA1Q9Y6Y1 1673 aa13.59□□□□□ -0.23
USP4-214ENST00000491791 PLEKHG2Q9H7P9 1386 aa13.59□□□□□ -0.23
USP4-214ENST00000491791 SF3B2Q13435 895 aaKnown RBP13.59□□□□□ -0.23
USP4-214ENST00000491791 ZBTB47Q9UFB7 747 aaPredicted RBP13.59□□□□□ -0.23
USP4-214ENST00000491791 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.59□□□□□ -0.23
USP4-214ENST00000491791 TNS3Q68CZ2 1445 aa13.58□□□□□ -0.24
USP4-214ENST00000491791 RGS3P49796 1198 aa13.58□□□□□ -0.24
USP4-214ENST00000491791 DCTN1Q14203 1278 aa13.58□□□□□ -0.24
USP4-214ENST00000491791 LMOD2Q6P5Q4 547 aa13.58□□□□□ -0.24
USP4-214ENST00000491791 RTF1Q92541 710 aaKnown RBP13.58□□□□□ -0.24
USP4-214ENST00000491791 SLIT2O94813 1529 aa13.58□□□□□ -0.24
USP4-214ENST00000491791 OVOS2A0A0G2JMS6 1433 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 GNAT3A8MTJ3 354 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 MCM10Q7L590 875 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 ARHGEF25Q86VW2 580 aa13.57□□□□□ -0.24
USP4-214ENST00000491791 GCC1Q96CN9 775 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms