RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 FYB1O15117 783 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 ZBTB7BO15156 539 aaPredicted RBP15.34■□□□□ 0.05
SHOX2-205ENST00000490689 TPM3P06753 285 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 PHACTR3Q96KR7 559 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 CCDC73Q6ZRK6 1079 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 TXNDC2Q86VQ3 553 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 CLASRPQ8N2M8 674 aaKnown RBP15.34■□□□□ 0.05
SHOX2-205ENST00000490689 LMBRD1Q9NUN5 540 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 CNPY2Q9Y2B0 182 aa15.34■□□□□ 0.05
SHOX2-205ENST00000490689 USP26Q9BXU7 913 aa15.33■□□□□ 0.05
SHOX2-205ENST00000490689 NUP62CLQ9H1M0 184 aa15.33■□□□□ 0.05
SHOX2-205ENST00000490689 VAMP4O75379 141 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 KRT85P78386 507 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 MRPL50Q8N5N7 158 aaKnown RBP15.33■□□□□ 0.04
SHOX2-205ENST00000490689 TRERF1Q96PN7 1200 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 TMEM63CQ9P1W3 806 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 SPG7Q9UQ90 795 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 CYP46A1Q9Y6A2 500 aa15.33■□□□□ 0.04
SHOX2-205ENST00000490689 CCT4P50991 539 aaKnown RBP15.32■□□□□ 0.04
SHOX2-205ENST00000490689 TEFQ10587 303 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 TFIP11Q9UBB9 837 aaKnown RBP15.32■□□□□ 0.04
SHOX2-205ENST00000490689 SRGAP3O43295 1099 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 AIMP1Q12904 312 aaKnown RBP15.32■□□□□ 0.04
SHOX2-205ENST00000490689 RNF20Q5VTR2 975 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 TRIM35Q9UPQ4 493 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 HDGFP51858 240 aaKnown RBP15.32■□□□□ 0.04
SHOX2-205ENST00000490689 INSRP06213 1382 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 SAMD9Q5K651 1589 aa15.32■□□□□ 0.04
SHOX2-205ENST00000490689 KDM4AO75164 1064 aa15.31■□□□□ 0.04
SHOX2-205ENST00000490689 FSD1Q9BTV5 496 aa15.31■□□□□ 0.04
SHOX2-205ENST00000490689 PDRG1Q9NUG6 133 aa15.31■□□□□ 0.04
SHOX2-205ENST00000490689 G3BP1Q13283 466 aaKnown RBP eCLIP15.31■□□□□ 0.04
SHOX2-205ENST00000490689 NUP160Q12769 1436 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 MAP3K11Q16584 847 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 CCDC30Q5VVM6 783 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 MNS1Q8NEH6 495 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 ZNF445P59923 1031 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 HS1BP3Q53T59 392 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 SPATA32Q96LK8 384 aa15.3■□□□□ 0.04
SHOX2-205ENST00000490689 C14orf93Q9H972 538 aaKnown RBP15.3■□□□□ 0.04
SHOX2-205ENST00000490689 TRMT1Q9NXH9 659 aaKnown RBP15.3■□□□□ 0.04
SHOX2-205ENST00000490689 SMC2O95347 1197 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 PRPF40BQ6NWY9 871 aaKnown RBP15.29■□□□□ 0.04
SHOX2-205ENST00000490689 PPP1R9BQ96SB3 815 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 IL16Q14005 1332 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 PDE1AP54750 535 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 HDGFL1Q5TGJ6 251 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 FAM177A1Q8N128 213 aaPredicted RBP15.29■□□□□ 0.04
SHOX2-205ENST00000490689 DDX11Q96FC9 970 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 TNNT1P13805 278 aa15.29■□□□□ 0.04
SHOX2-205ENST00000490689 STX6O43752 255 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 PDCP20941 246 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 SIL1Q9H173 461 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 DCTPP1Q9H773 170 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 MBD5Q9P267 1494 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 PRIMPOLQ96LW4 560 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 LRRFIP2Q9Y608 721 aaKnown RBP15.28■□□□□ 0.04
SHOX2-205ENST00000490689 ANKRD44Q8N8A2 993 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 SYCP2Q9BX26 1530 aa15.28■□□□□ 0.04
SHOX2-205ENST00000490689 KINO60870 393 aaKnown RBP15.28■□□□□ 0.04
SHOX2-205ENST00000490689 CCDC94Q9BW85 323 aaPredicted RBP15.28■□□□□ 0.04
SHOX2-205ENST00000490689 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHOX2-205ENST00000490689 V9GYY5 206 aaPredicted RBP15.28■□□□□ 0.04
SHOX2-205ENST00000490689 PPFIA3O75145 1194 aa15.27■□□□□ 0.04
SHOX2-205ENST00000490689 RAPGEF3O95398 923 aa15.27■□□□□ 0.04
SHOX2-205ENST00000490689 GADD45BO75293 160 aaPredicted RBP15.27■□□□□ 0.03
SHOX2-205ENST00000490689 ADGRL2O95490 1459 aa15.27■□□□□ 0.03
SHOX2-205ENST00000490689 TCEANC2Q96MN5 208 aa15.27■□□□□ 0.03
SHOX2-205ENST00000490689 HDAC5Q9UQL6 1122 aa15.27■□□□□ 0.03
SHOX2-205ENST00000490689 HSP90AB4PQ58FF6 505 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 ARHGAP45Q92619 1136 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 GSPT1P15170 499 aaKnown RBP15.26■□□□□ 0.03
SHOX2-205ENST00000490689 NECAB1Q8N987 351 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 GPT2Q8TD30 523 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 ZRANB1Q9UGI0 708 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 LIMCH1Q9UPQ0 1083 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 CCDC66A2RUB6 948 aa15.26■□□□□ 0.03
SHOX2-205ENST00000490689 TEX35Q5T0J7 233 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 CCDC186Q7Z3E2 898 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 ESYT1Q9BSJ8 1104 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 PSMA5P28066 241 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 NPC1L1Q9UHC9 1359 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 GJB2P29033 226 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 DNM1Q05193 864 aaKnown RBP15.25■□□□□ 0.03
SHOX2-205ENST00000490689 AEBP1Q8IUX7 1158 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 CPA1P15085 419 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 UBE2HP62256 183 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 SRCIN1Q9C0H9 1055 aa15.25■□□□□ 0.03
SHOX2-205ENST00000490689 ITSN2Q9NZM3 1697 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 ME1P48163 572 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 CEP85Q6P2H3 762 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 BLOC1S2Q6QNY1 142 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 IDI1Q13907 227 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 PDILTQ8N807 584 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 DISP1Q96F81 1524 aa15.24■□□□□ 0.03
SHOX2-205ENST00000490689 WDR7Q9Y4E6 1490 aa15.23■□□□□ 0.03
SHOX2-205ENST00000490689 CPLX1O14810 134 aa15.23■□□□□ 0.03
SHOX2-205ENST00000490689 NLRP6P59044 892 aa15.23■□□□□ 0.03
SHOX2-205ENST00000490689 DNAJC2Q99543 621 aaKnown RBP15.23■□□□□ 0.03
SHOX2-205ENST00000490689 TOMM22Q9NS69 142 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms