RNA–Protein interactions for RNA: ENST00000490609.1

COL2A1-207, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 2

Gene COL2A1, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-207ENST00000490609 NBPF6Q5VWK0 638 aa21.92■■□□□ 1.1
COL2A1-207ENST00000490609 NBPF4Q96M43 638 aa21.92■■□□□ 1.1
COL2A1-207ENST00000490609 KIF20BQ96Q89 1820 aa21.92■■□□□ 1.1
COL2A1-207ENST00000490609 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
COL2A1-207ENST00000490609 GGNBP2Q9H3C7 697 aa21.9■■□□□ 1.1
COL2A1-207ENST00000490609 AMPHP49418 695 aa21.89■■□□□ 1.09
COL2A1-207ENST00000490609 USP47Q96K76 1375 aa21.88■■□□□ 1.09
COL2A1-207ENST00000490609 ZCRB1Q8TBF4 217 aaKnown RBP21.87■■□□□ 1.09
COL2A1-207ENST00000490609 CARD14Q9BXL6 1004 aa21.87■■□□□ 1.09
COL2A1-207ENST00000490609 RTL1A6NKG5 1358 aa21.87■■□□□ 1.09
COL2A1-207ENST00000490609 PNPLA7Q6ZV29 1317 aa21.86■■□□□ 1.09
COL2A1-207ENST00000490609 SLC24A1O60721 1099 aa21.86■■□□□ 1.09
COL2A1-207ENST00000490609 USHBP1Q8N6Y0 703 aa21.86■■□□□ 1.09
COL2A1-207ENST00000490609 SLC27A3Q5K4L6 730 aa21.85■■□□□ 1.09
COL2A1-207ENST00000490609 ARXQ96QS3 562 aa21.85■■□□□ 1.09
COL2A1-207ENST00000490609 MAP3K5Q99683 1374 aa21.85■■□□□ 1.09
COL2A1-207ENST00000490609 TMF1P82094 1093 aa21.84■■□□□ 1.09
COL2A1-207ENST00000490609 HSP90AB2PQ58FF8 381 aa21.84■■□□□ 1.09
COL2A1-207ENST00000490609 ITGB4P16144 1822 aa21.84■■□□□ 1.09
COL2A1-207ENST00000490609 TAF1LQ8IZX4 1826 aa21.84■■□□□ 1.09
COL2A1-207ENST00000490609 TOGARAM1Q9Y4F4 1720 aa21.83■■□□□ 1.08
COL2A1-207ENST00000490609 MAP2P11137 1827 aaKnown RBP21.83■■□□□ 1.08
COL2A1-207ENST00000490609 SYTL4Q96C24 671 aaPredicted RBP21.82■■□□□ 1.08
COL2A1-207ENST00000490609 DCAF8L1A6NGE4 600 aa21.81■■□□□ 1.08
COL2A1-207ENST00000490609 TRIM26Q12899 539 aaPredicted RBP21.81■■□□□ 1.08
COL2A1-207ENST00000490609 INSRP06213 1382 aa21.81■■□□□ 1.08
COL2A1-207ENST00000490609 ANKRD26Q9UPS8 1709 aa21.8■■□□□ 1.08
COL2A1-207ENST00000490609 SLC16A10Q8TF71 515 aa21.79■■□□□ 1.08
COL2A1-207ENST00000490609 PKD1L3Q7Z443 1732 aa21.78■■□□□ 1.08
COL2A1-207ENST00000490609 ZNF784Q8NCA9 323 aaPredicted RBP21.78■■□□□ 1.08
COL2A1-207ENST00000490609 C5P01031 1676 aa21.78■■□□□ 1.08
COL2A1-207ENST00000490609 EMILIN1Q9Y6C2 1016 aa21.77■■□□□ 1.08
COL2A1-207ENST00000490609 NCAPD2Q15021 1401 aa21.77■■□□□ 1.08
COL2A1-207ENST00000490609 CGNL1Q0VF96 1302 aa21.77■■□□□ 1.07
COL2A1-207ENST00000490609 CYP27B1O15528 508 aa21.76■■□□□ 1.07
COL2A1-207ENST00000490609 TFCP2L1Q9NZI6 479 aa21.76■■□□□ 1.07
COL2A1-207ENST00000490609 FLT4P35916 1363 aa21.75■■□□□ 1.07
COL2A1-207ENST00000490609 COL23A1Q86Y22 540 aaPredicted RBP21.75■■□□□ 1.07
COL2A1-207ENST00000490609 CCNL1Q9UK58 526 aaPredicted RBP21.75■■□□□ 1.07
COL2A1-207ENST00000490609 KIF24Q5T7B8 1368 aa21.74■■□□□ 1.07
COL2A1-207ENST00000490609 NSD3Q9BZ95 1437 aa21.74■■□□□ 1.07
COL2A1-207ENST00000490609 RAPGEF4Q8WZA2 1011 aa21.73■■□□□ 1.07
COL2A1-207ENST00000490609 TATP17735 454 aaPredicted RBP21.72■■□□□ 1.07
COL2A1-207ENST00000490609 NLGN2Q8NFZ4 835 aa21.72■■□□□ 1.07
COL2A1-207ENST00000490609 AMIGO3Q86WK7 504 aa21.71■■□□□ 1.07
COL2A1-207ENST00000490609 SMG6Q86US8 1419 aaKnown RBP21.71■■□□□ 1.07
COL2A1-207ENST00000490609 UBR3Q6ZT12 1888 aa21.71■■□□□ 1.07
COL2A1-207ENST00000490609 CDCA8Q53HL2 280 aa21.7■■□□□ 1.06
COL2A1-207ENST00000490609 PCDH11XQ9BZA7 1347 aa21.69■■□□□ 1.06
COL2A1-207ENST00000490609 PCDH11YQ9BZA8 1340 aa21.69■■□□□ 1.06
COL2A1-207ENST00000490609 C4BP0C0L5 1744 aa21.68■■□□□ 1.06
COL2A1-207ENST00000490609 WASHC2AQ641Q2 1341 aa21.67■■□□□ 1.06
COL2A1-207ENST00000490609 POLD1P28340 1107 aa21.67■■□□□ 1.06
COL2A1-207ENST00000490609 NKX1-1Q15270 411 aaPredicted RBP21.67■■□□□ 1.06
COL2A1-207ENST00000490609 MPRIPQ6WCQ1 1025 aa21.67■■□□□ 1.06
COL2A1-207ENST00000490609 CEP350Q5VT06 3117 aa21.66■■□□□ 1.06
COL2A1-207ENST00000490609 PALLDQ8WX93 1383 aa21.66■■□□□ 1.06
COL2A1-207ENST00000490609 EYA1Q99502 592 aa21.66■■□□□ 1.06
COL2A1-207ENST00000490609 POLKQ9UBT6 870 aa21.66■■□□□ 1.06
COL2A1-207ENST00000490609 SMIM5Q71RC9 77 aa21.65■■□□□ 1.06
COL2A1-207ENST00000490609 PIGBQ92521 554 aa21.65■■□□□ 1.06
COL2A1-207ENST00000490609 TIMELESSQ9UNS1 1208 aa21.65■■□□□ 1.06
COL2A1-207ENST00000490609 YBX3P16989 372 aaKnown RBP eCLIP21.64■■□□□ 1.05
COL2A1-207ENST00000490609 GPR162Q16538 588 aa21.64■■□□□ 1.05
COL2A1-207ENST00000490609 KLHL34Q8N239 644 aa21.64■■□□□ 1.05
COL2A1-207ENST00000490609 MSL1Q68DK7 614 aa21.63■■□□□ 1.05
COL2A1-207ENST00000490609 PPM1GO15355 546 aaPredicted RBP21.62■■□□□ 1.05
COL2A1-207ENST00000490609 MSH5O43196 834 aa21.6■■□□□ 1.05
COL2A1-207ENST00000490609 EIF4A2Q14240 407 aaKnown RBP21.58■■□□□ 1.05
COL2A1-207ENST00000490609 LINC00116Q8NCU8 138 aa21.58■■□□□ 1.05
COL2A1-207ENST00000490609 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.58■■□□□ 1.05
COL2A1-207ENST00000490609 ASAP1Q9ULH1 1129 aa21.57■■□□□ 1.04
COL2A1-207ENST00000490609 PHKG2P15735 406 aa21.56■■□□□ 1.04
COL2A1-207ENST00000490609 ITPK1Q13572 414 aa21.56■■□□□ 1.04
COL2A1-207ENST00000490609 SMARCC1Q92922 1105 aaPredicted RBP21.56■■□□□ 1.04
COL2A1-207ENST00000490609 SPG7Q9UQ90 795 aa21.56■■□□□ 1.04
COL2A1-207ENST00000490609 CLSPNQ9HAW4 1339 aa21.55■■□□□ 1.04
COL2A1-207ENST00000490609 PELP1Q8IZL8 1130 aaKnown RBP21.55■■□□□ 1.04
COL2A1-207ENST00000490609 LOC102724428A0A0B4J2F2 783 aa21.54■■□□□ 1.04
COL2A1-207ENST00000490609 SIK1P57059 783 aa21.54■■□□□ 1.04
COL2A1-207ENST00000490609 C1QTNF8P60827 252 aa21.54■■□□□ 1.04
COL2A1-207ENST00000490609 FLAD1Q8NFF5 587 aa21.54■■□□□ 1.04
COL2A1-207ENST00000490609 MYH14Q7Z406 1995 aaKnown RBP21.54■■□□□ 1.04
COL2A1-207ENST00000490609 TNNT2P45379 298 aaPredicted RBP21.53■■□□□ 1.04
COL2A1-207ENST00000490609 SLC4A9Q96Q91 983 aa21.53■■□□□ 1.04
COL2A1-207ENST00000490609 PCGF6Q9BYE7 350 aa21.53■■□□□ 1.04
COL2A1-207ENST00000490609 ATG3Q9NT62 314 aa21.53■■□□□ 1.04
COL2A1-207ENST00000490609 CD2APQ9Y5K6 639 aa21.53■■□□□ 1.04
COL2A1-207ENST00000490609 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.52■■□□□ 1.04
COL2A1-207ENST00000490609 HSPA5P11021 654 aaKnown RBP21.52■■□□□ 1.04
COL2A1-207ENST00000490609 IGSF1Q8N6C5 1336 aa21.52■■□□□ 1.03
COL2A1-207ENST00000490609 ZNF831Q5JPB2 1677 aa21.51■■□□□ 1.03
COL2A1-207ENST00000490609 IFNL2Q8IZJ0 200 aa21.51■■□□□ 1.03
COL2A1-207ENST00000490609 PANK3Q9H999 370 aa21.51■■□□□ 1.03
COL2A1-207ENST00000490609 COL5A3P25940 1745 aaPredicted RBP21.51■■□□□ 1.03
COL2A1-207ENST00000490609 KIAA1551Q9HCM1 1747 aa21.51■■□□□ 1.03
COL2A1-207ENST00000490609 PHF14O94880 888 aa21.5■■□□□ 1.03
COL2A1-207ENST00000490609 AK7Q96M32 723 aa21.5■■□□□ 1.03
COL2A1-207ENST00000490609 KIF13BQ9NQT8 1826 aa21.5■■□□□ 1.03
COL2A1-207ENST00000490609 POLR3GLQ9BT43 218 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms