RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 UVSSAQ2YD98 709 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 IQCEQ6IPM2 695 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 WDR63Q8IWG1 891 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 KDM4AO75164 1064 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 JAKMIP3Q5VZ66 844 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 ERC1Q8IUD2 1116 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 TMEM87AQ8NBN3 555 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 SPATS2LQ9NUQ6 558 aaKnown RBP8.48□□□□□ -1.05
SYNE1-228ENST00000490135 GOLGA6L10A0A0M3HER8 536 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 POTEJP0CG39 1038 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 CAPN2P17655 700 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 PKD2Q13563 968 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 INTS3Q68E01 1043 aaKnown RBP8.48□□□□□ -1.05
SYNE1-228ENST00000490135 IRAK4Q9NWZ3 460 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 EPB41L2O43491 1005 aaKnown RBP8.48□□□□□ -1.05
SYNE1-228ENST00000490135 DHX8Q14562 1220 aaKnown RBP8.48□□□□□ -1.05
SYNE1-228ENST00000490135 RPUSD2Q8IZ73 545 aaKnown RBP8.48□□□□□ -1.05
SYNE1-228ENST00000490135 KIF7Q2M1P5 1343 aa8.48□□□□□ -1.05
SYNE1-228ENST00000490135 KINO60870 393 aaKnown RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 MICALCLQ6ZW33 695 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 FOXD1Q16676 465 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ARMCX6Q7L4S7 300 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 PPFIBP1Q86W92 1011 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 NUCKS1Q9H1E3 243 aaKnown RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 FHAD1B1AJZ9 1412 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ATP2B1P20020 1258 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 GCKP35557 465 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 CETN2P41208 172 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ZSCAN26Q16670 478 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 EP400NLQ6ZTU2 488 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 NLRP13Q86W25 1043 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 CFAP57Q96MR6 1250 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 PIBF1Q8WXW3 757 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 HOMER2Q9NSB8 354 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 PPP1R1BQ9UD71 204 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 DACH1Q9UI36 760 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ANKRD18BA2A2Z9 1011 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 PABPN1LA6NDY0 278 aaKnown RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 ATP2B2Q01814 1243 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 RBBP5Q15291 538 aaKnown RBP8.47□□□□□ -1.05
SYNE1-228ENST00000490135 FAM212AQ96EL1 285 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 COMMD10Q9Y6G5 202 aa8.47□□□□□ -1.05
SYNE1-228ENST00000490135 CCDC7Q96M83 1385 aa8.46□□□□□ -1.05
SYNE1-228ENST00000490135 MAP2K1Q02750 393 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-228ENST00000490135 RNF187Q5TA31 235 aaPredicted RBP8.46□□□□□ -1.05
SYNE1-228ENST00000490135 NEK11Q8NG66 645 aa8.46□□□□□ -1.05
SYNE1-228ENST00000490135 PDZRN3Q9UPQ7 1066 aa8.46□□□□□ -1.05
SYNE1-228ENST00000490135 SCRIBQ14160 1630 aa8.46□□□□□ -1.05
SYNE1-228ENST00000490135 CCDC192P0DO97 292 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 HNRNPH2P55795 449 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 SF3B2Q13435 895 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 MCTP2Q6DN12 878 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 API5Q9BZZ5 524 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 RRP7AQ9Y3A4 280 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 MRFAP1L1Q96HT8 127 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 RSRC1Q96IZ7 334 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 LRRCC1Q9C099 1032 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 RRP15Q9Y3B9 282 aaKnown RBP8.46□□□□□ -1.06
SYNE1-228ENST00000490135 E2F4Q16254 413 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 NBPF8Q3BBV2 869 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 NECTIN2Q92692 538 aa8.46□□□□□ -1.06
SYNE1-228ENST00000490135 KIF3CO14782 793 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 RAD51AP2Q09MP3 1159 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 ZNF396Q96N95 335 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 SRRTQ9BXP5 876 aaKnown RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 FKBP5Q13451 457 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 RIC3Q7Z5B4 369 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 CXorf56Q9H5V9 222 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 PRIM1P49642 420 aaKnown RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 TERF2Q15554 542 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 CEP57Q86XR8 500 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 TTC12Q9H892 705 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 TAF4BQ92750 862 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 TBC1D32Q96NH3 1257 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 RAI14Q9P0K7 980 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 DDX19BQ9UMR2 479 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 BAG4O95429 457 aaKnown RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 SERPINC1P01008 464 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 SOGA3Q5TF21 947 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 NUTM2DQ5VT03 806 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-228ENST00000490135 MIPOL1Q8TD10 442 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 FMNL2Q96PY5 1086 aa8.45□□□□□ -1.06
SYNE1-228ENST00000490135 CCDC175P0C221 793 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 SYT10Q6XYQ8 523 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 RBSNQ9H1K0 784 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 JMYQ8N9B5 988 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 CDCA7LQ96GN5 454 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 BMP2KQ9NSY1 1161 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-228ENST00000490135 WDR70Q9NW82 654 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 VPS18Q9P253 973 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 BCL2L13Q9BXK5 485 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 WDHD1O75717 1129 aaPredicted RBP8.44□□□□□ -1.06
SYNE1-228ENST00000490135 GOLGA5Q8TBA6 731 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 SLC24A3Q9HC58 644 aa8.44□□□□□ -1.06
SYNE1-228ENST00000490135 GNL3LQ9NVN8 582 aaKnown RBP8.44□□□□□ -1.06
SYNE1-228ENST00000490135 CCDC171Q6TFL3 1326 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 DBN1Q16643 649 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 KANK4Q5T7N3 995 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms