RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RNF123Q5XPI4 1314 aa28.15■■■□□ 2.1
SMC4-221ENST00000489573 PLEKHG2Q9H7P9 1386 aa28.15■■■□□ 2.1
SMC4-221ENST00000489573 RAPGEF4Q8WZA2 1011 aa28.15■■■□□ 2.1
SMC4-221ENST00000489573 IFT57Q9NWB7 429 aa28.15■■■□□ 2.1
SMC4-221ENST00000489573 GNAT3A8MTJ3 354 aa28.14■■■□□ 2.1
SMC4-221ENST00000489573 JCADQ9P266 1359 aa28.13■■■□□ 2.09
SMC4-221ENST00000489573 GNAI1P63096 354 aa28.13■■■□□ 2.09
SMC4-221ENST00000489573 TOM1L2Q6ZVM7 507 aa28.13■■■□□ 2.09
SMC4-221ENST00000489573 MCM10Q7L590 875 aa28.13■■■□□ 2.09
SMC4-221ENST00000489573 TSR2Q969E8 191 aaKnown RBP28.13■■■□□ 2.09
SMC4-221ENST00000489573 EVA1CP58658 441 aa28.12■■■□□ 2.09
SMC4-221ENST00000489573 TATP17735 454 aaPredicted RBP28.11■■■□□ 2.09
SMC4-221ENST00000489573 STRN4Q9NRL3 753 aa28.11■■■□□ 2.09
SMC4-221ENST00000489573 MEGF6O75095 1541 aa28.11■■■□□ 2.09
SMC4-221ENST00000489573 ZNF853P0CG23 659 aa28.11■■■□□ 2.09
SMC4-221ENST00000489573 BTG4Q9NY30 223 aa28.11■■■□□ 2.09
SMC4-221ENST00000489573 LAS1LQ9Y4W2 734 aaKnown RBP28.11■■■□□ 2.09
SMC4-221ENST00000489573 ZNF530Q6P9A1 599 aaPredicted RBP28.1■■■□□ 2.09
SMC4-221ENST00000489573 CFAP44Q96MT7 982 aa28.1■■■□□ 2.09
SMC4-221ENST00000489573 LRRC37A3O60309 1634 aa28.09■■■□□ 2.09
SMC4-221ENST00000489573 CARD10Q9BWT7 1032 aa28.09■■■□□ 2.09
SMC4-221ENST00000489573 CRB1P82279 1406 aa28.09■■■□□ 2.09
SMC4-221ENST00000489573 LARP1Q6PKG0 1096 aaKnown RBP28.08■■■□□ 2.09
SMC4-221ENST00000489573 NUTM2BA6NNL0 878 aaPredicted RBP28.07■■■□□ 2.08
SMC4-221ENST00000489573 NUTM2EB1AL46 878 aaPredicted RBP28.07■■■□□ 2.08
SMC4-221ENST00000489573 ADAMTS2O95450 1211 aa28.07■■■□□ 2.08
SMC4-221ENST00000489573 AKAP4Q5JQC9 854 aa28.07■■■□□ 2.08
SMC4-221ENST00000489573 NUTM2AQ8IVF1 878 aaPredicted RBP28.07■■■□□ 2.08
SMC4-221ENST00000489573 RRP1P56182 461 aaKnown RBP28.07■■■□□ 2.08
SMC4-221ENST00000489573 FKBP8Q14318 412 aa28.07■■■□□ 2.08
SMC4-221ENST00000489573 CT47B1P0C2W7 299 aaPredicted RBP28.06■■■□□ 2.08
SMC4-221ENST00000489573 EXOSC9Q06265 439 aaKnown RBP28.06■■■□□ 2.08
SMC4-221ENST00000489573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.06■■■□□ 2.081e-7■■■■■ 35.1
SMC4-221ENST00000489573 PLCH1Q4KWH8 1693 aa28.06■■■□□ 2.08
SMC4-221ENST00000489573 C1orf141Q5JVX7 400 aa28.05■■■□□ 2.08
SMC4-221ENST00000489573 MBIPQ9NS73 344 aa28.05■■■□□ 2.08
SMC4-221ENST00000489573 SPG7Q9UQ90 795 aa28.04■■■□□ 2.08
SMC4-221ENST00000489573 PARP4Q9UKK3 1724 aaKnown RBP28.04■■■□□ 2.08
SMC4-221ENST00000489573 OVOS2A0A0G2JMS6 1433 aa28.04■■■□□ 2.08
SMC4-221ENST00000489573 PKD1L3Q7Z443 1732 aa28.03■■■□□ 2.08
SMC4-221ENST00000489573 IL17REQ8NFR9 667 aa28.03■■■□□ 2.08
SMC4-221ENST00000489573 CHL1O00533 1208 aa28.02■■■□□ 2.08
SMC4-221ENST00000489573 CEMIPQ8WUJ3 1361 aa28.01■■■□□ 2.08
SMC4-221ENST00000489573 IRX6P78412 446 aaPredicted RBP28.01■■■□□ 2.07
SMC4-221ENST00000489573 SPATA31A6Q5VVP1 1343 aa28■■■□□ 2.07
SMC4-221ENST00000489573 NRAPQ86VF7 1730 aa28■■■□□ 2.07
SMC4-221ENST00000489573 IL2RBP14784 551 aa27.99■■■□□ 2.07
SMC4-221ENST00000489573 RARSP54136 660 aaKnown RBP27.97■■■□□ 2.07
SMC4-221ENST00000489573 NWD2Q9ULI1 1742 aa27.97■■■□□ 2.07
SMC4-221ENST00000489573 SLIT2O94813 1529 aa27.97■■■□□ 2.07
SMC4-221ENST00000489573 RNMTO43148 476 aaKnown RBP27.95■■■□□ 2.07
SMC4-221ENST00000489573 PHKG2P15735 406 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 MPRIPQ6WCQ1 1025 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.95■■■□□ 2.07
SMC4-221ENST00000489573 LGR6Q9HBX8 967 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 BABAM1Q9NWV8 329 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 TSPYL4Q9UJ04 414 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 ADAMTS7Q9UKP4 1686 aa27.95■■■□□ 2.07
SMC4-221ENST00000489573 IFNL2Q8IZJ0 200 aa27.94■■■□□ 2.06
SMC4-221ENST00000489573 BCAR3O75815 825 aa27.94■■■□□ 2.06
SMC4-221ENST00000489573 TAF7Q15545 349 aaPredicted RBP27.94■■■□□ 2.06
SMC4-221ENST00000489573 USP35Q9P2H5 1018 aa27.94■■■□□ 2.06
SMC4-221ENST00000489573 ZCRB1Q8TBF4 217 aaKnown RBP27.93■■■□□ 2.06
SMC4-221ENST00000489573 ERICH6BQ5W0A0 696 aa27.92■■■□□ 2.06
SMC4-221ENST00000489573 ZNF428Q96B54 188 aa27.92■■■□□ 2.06
SMC4-221ENST00000489573 PCDH11XQ9BZA7 1347 aa27.92■■■□□ 2.06
SMC4-221ENST00000489573 PCDH11YQ9BZA8 1340 aa27.92■■■□□ 2.06
SMC4-221ENST00000489573 LRP6O75581 1613 aa27.92■■■□□ 2.06
SMC4-221ENST00000489573 PLIN1O60240 522 aa27.91■■■□□ 2.06
SMC4-221ENST00000489573 MIS18AQ9NYP9 233 aa27.91■■■□□ 2.06
SMC4-221ENST00000489573 CYP27B1O15528 508 aa27.9■■■□□ 2.06
SMC4-221ENST00000489573 TEFQ10587 303 aa27.9■■■□□ 2.06
SMC4-221ENST00000489573 DISP2A7MBM2 1401 aa27.9■■■□□ 2.06
SMC4-221ENST00000489573 KDM6AO15550 1401 aaPredicted RBP27.9■■■□□ 2.06
SMC4-221ENST00000489573 HSP90AB1P08238 724 aaKnown RBP27.9■■■□□ 2.06
SMC4-221ENST00000489573 TWISTNBQ3B726 338 aaPredicted RBP27.9■■■□□ 2.06
SMC4-221ENST00000489573 TSPYL6Q8N831 410 aa27.9■■■□□ 2.06
SMC4-221ENST00000489573 C8orf58Q8NAV2 365 aa27.9■■■□□ 2.06
SMC4-221ENST00000489573 VIRMAQ69YN4 1812 aaKnown RBP27.89■■■□□ 2.06
SMC4-221ENST00000489573 VAMP4O75379 141 aa27.89■■■□□ 2.05
SMC4-221ENST00000489573 C8orf37Q96NL8 207 aa27.88■■■□□ 2.05
SMC4-221ENST00000489573 SOCS7O14512 581 aa27.87■■■□□ 2.05
SMC4-221ENST00000489573 ALDH1L2Q3SY69 923 aa27.87■■■□□ 2.05
SMC4-221ENST00000489573 DCAF5Q96JK2 942 aa27.87■■■□□ 2.05
SMC4-221ENST00000489573 BCL2L13Q9BXK5 485 aa27.87■■■□□ 2.05
SMC4-221ENST00000489573 SCN11AQ9UI33 1791 aa27.87■■■□□ 2.05
SMC4-221ENST00000489573 SPATA31A1Q5TZJ5 1347 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 NGLY1Q96IV0 654 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 SMC4Q9NTJ3 1288 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 WNK3Q9BYP7 1800 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 SHANK3Q9BYB0 1731 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 ELL2O00472 640 aaPredicted RBP27.86■■■□□ 2.05
SMC4-221ENST00000489573 SSH1Q8WYL5 1049 aa27.86■■■□□ 2.05
SMC4-221ENST00000489573 UNC5CLQ8IV45 518 aa27.85■■■□□ 2.05
SMC4-221ENST00000489573 THRAP3Q9Y2W1 955 aaKnown RBP27.85■■■□□ 2.05
SMC4-221ENST00000489573 MRC1P22897 1456 aa27.84■■■□□ 2.05
SMC4-221ENST00000489573 SIPA1L3O60292 1781 aaPredicted RBP27.84■■■□□ 2.05
SMC4-221ENST00000489573 KDM3BQ7LBC6 1761 aa27.84■■■□□ 2.05
SMC4-221ENST00000489573 SPATA31A5Q5VU36 1347 aa27.83■■■□□ 2.05
SMC4-221ENST00000489573 SPATA31A7Q8IWB4 1347 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms