RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.45■■□□□ 1.34
MDC1-206ENST00000489540 RGPD1P0DJD0 1748 aa23.45■■□□□ 1.34
MDC1-206ENST00000489540 PLSCR1O15162 318 aa23.44■■□□□ 1.34
MDC1-206ENST00000489540 EZH2Q15910 746 aaKnown RBP23.44■■□□□ 1.34
MDC1-206ENST00000489540 SPG7Q9UQ90 795 aa23.44■■□□□ 1.34
MDC1-206ENST00000489540 PARD3Q8TEW0 1356 aa23.44■■□□□ 1.34
MDC1-206ENST00000489540 ACSBG1Q96GR2 724 aa23.43■■□□□ 1.34
MDC1-206ENST00000489540 RGPD2P0DJD1 1756 aa23.43■■□□□ 1.34
MDC1-206ENST00000489540 PCDH11XQ9BZA7 1347 aa23.43■■□□□ 1.34
MDC1-206ENST00000489540 PCDH11YQ9BZA8 1340 aa23.43■■□□□ 1.34
MDC1-206ENST00000489540 KCNQ2O43526 872 aa23.42■■□□□ 1.34
MDC1-206ENST00000489540 PTF1AQ7RTS3 328 aa23.42■■□□□ 1.34
MDC1-206ENST00000489540 DDX10Q13206 875 aaKnown RBP23.42■■□□□ 1.34
MDC1-206ENST00000489540 DIAPH1O60610 1272 aaKnown RBP23.41■■□□□ 1.34
MDC1-206ENST00000489540 PLEKHG2Q9H7P9 1386 aa23.4■■□□□ 1.34
MDC1-206ENST00000489540 SULT6B1Q6IMI4 303 aa23.39■■□□□ 1.33
MDC1-206ENST00000489540 CYP27B1O15528 508 aa23.38■■□□□ 1.33
MDC1-206ENST00000489540 PPP2R1AP30153 589 aa23.38■■□□□ 1.33
MDC1-206ENST00000489540 CFAP53Q96M91 514 aa23.38■■□□□ 1.33
MDC1-206ENST00000489540 TNS1Q9HBL0 1735 aaKnown RBP23.38■■□□□ 1.33
MDC1-206ENST00000489540 PRIM1P49642 420 aaKnown RBP23.37■■□□□ 1.33
MDC1-206ENST00000489540 PLEKHO1Q53GL0 409 aaPredicted RBP23.37■■□□□ 1.33
MDC1-206ENST00000489540 AMOTQ4VCS5 1084 aa23.36■■□□□ 1.33
MDC1-206ENST00000489540 NKX1-1Q15270 411 aaPredicted RBP23.35■■□□□ 1.33
MDC1-206ENST00000489540 AEBP1Q8IUX7 1158 aa23.35■■□□□ 1.33
MDC1-206ENST00000489540 SYTL4Q96C24 671 aaPredicted RBP23.35■■□□□ 1.33
MDC1-206ENST00000489540 IFNL2Q8IZJ0 200 aa23.34■■□□□ 1.33
MDC1-206ENST00000489540 KDRP35968 1356 aa23.34■■□□□ 1.33
MDC1-206ENST00000489540 NBPF14Q5TI25 921 aa23.33■■□□□ 1.32
MDC1-206ENST00000489540 SBF2Q86WG5 1849 aa23.32■■□□□ 1.32
MDC1-206ENST00000489540 PHKG2P15735 406 aa23.32■■□□□ 1.32
MDC1-206ENST00000489540 RALBP1Q15311 655 aa23.31■■□□□ 1.32
MDC1-206ENST00000489540 PROM2Q8N271 834 aa23.31■■□□□ 1.32
MDC1-206ENST00000489540 NUDCQ9Y266 331 aa23.31■■□□□ 1.32
MDC1-206ENST00000489540 U2SURPO15042 1029 aaKnown RBP23.3■■□□□ 1.32
MDC1-206ENST00000489540 TXNRD1Q16881 649 aa23.3■■□□□ 1.32
MDC1-206ENST00000489540 HSP90AB1P08238 724 aaKnown RBP23.29■■□□□ 1.32
MDC1-206ENST00000489540 HMOX1P09601 288 aa23.29■■□□□ 1.32
MDC1-206ENST00000489540 NHSQ6T4R5 1651 aa23.29■■□□□ 1.32
MDC1-206ENST00000489540 ZNF530Q6P9A1 599 aaPredicted RBP23.28■■□□□ 1.32
MDC1-206ENST00000489540 ZNF316A6NFI3 1004 aaPredicted RBP23.27■■□□□ 1.32
MDC1-206ENST00000489540 COL3A1P02461 1466 aaPredicted RBP23.27■■□□□ 1.32
MDC1-206ENST00000489540 SHANK3Q9BYB0 1731 aa23.27■■□□□ 1.31
MDC1-206ENST00000489540 C1orf141Q5JVX7 400 aa23.26■■□□□ 1.31
MDC1-206ENST00000489540 MPRIPQ6WCQ1 1025 aa23.26■■□□□ 1.31
MDC1-206ENST00000489540 PKD1L3Q7Z443 1732 aa23.26■■□□□ 1.31
MDC1-206ENST00000489540 DCAF5Q96JK2 942 aa23.25■■□□□ 1.31
MDC1-206ENST00000489540 R3HDM1Q15032 1099 aaKnown RBP23.25■■□□□ 1.31
MDC1-206ENST00000489540 SLC27A3Q5K4L6 730 aa23.25■■□□□ 1.31
MDC1-206ENST00000489540 PSDA5PKW4 1024 aaPredicted RBP23.23■■□□□ 1.31
MDC1-206ENST00000489540 PIGBQ92521 554 aa23.23■■□□□ 1.31
MDC1-206ENST00000489540 RGPD3A6NKT7 1758 aaPredicted RBP23.22■■□□□ 1.31
MDC1-206ENST00000489540 RGPD4Q7Z3J3 1758 aa23.22■■□□□ 1.31
MDC1-206ENST00000489540 ERVV-2B6SEH9 535 aa23.22■■□□□ 1.31
MDC1-206ENST00000489540 TMOD3Q9NYL9 352 aa23.22■■□□□ 1.31
MDC1-206ENST00000489540 KAT6BQ8WYB5 2073 aa23.21■■□□□ 1.31
MDC1-206ENST00000489540 U2AF1L5P0DN76 240 aaPredicted RBP23.21■■□□□ 1.31
MDC1-206ENST00000489540 U2AF1Q01081 240 aaKnown RBP eCLIP23.21■■□□□ 1.31
MDC1-206ENST00000489540 AKAP4Q5JQC9 854 aa23.21■■□□□ 1.31
MDC1-206ENST00000489540 SMARCC1Q92922 1105 aaPredicted RBP23.21■■□□□ 1.31
MDC1-206ENST00000489540 HMGB2P26583 209 aaKnown RBP23.19■■□□□ 1.3
MDC1-206ENST00000489540 STK32BQ9NY57 414 aa23.19■■□□□ 1.3
MDC1-206ENST00000489540 RREB1Q92766 1687 aa23.18■■□□□ 1.3
MDC1-206ENST00000489540 FCHSD2O94868 740 aa23.18■■□□□ 1.3
MDC1-206ENST00000489540 MTHFSDQ2M296 383 aaKnown RBP23.18■■□□□ 1.3
MDC1-206ENST00000489540 LRRC4BQ9NT99 713 aa23.18■■□□□ 1.3
MDC1-206ENST00000489540 DOT1LQ8TEK3 1739 aa23.18■■□□□ 1.3
MDC1-206ENST00000489540 BTAF1O14981 1849 aa23.18■■□□□ 1.3
MDC1-206ENST00000489540 MYBBP1AQ9BQG0 1328 aaKnown RBP23.17■■□□□ 1.3
MDC1-206ENST00000489540 CABP4P57796 275 aa23.16■■□□□ 1.3
MDC1-206ENST00000489540 RSPH6AQ9H0K4 717 aa23.16■■□□□ 1.3
MDC1-206ENST00000489540 ANO8Q9HCE9 1232 aaPredicted RBP23.16■■□□□ 1.3
MDC1-206ENST00000489540 CCNL1Q9UK58 526 aaPredicted RBP23.16■■□□□ 1.3
MDC1-206ENST00000489540 PRKAR2BP31323 418 aa23.16■■□□□ 1.3
MDC1-206ENST00000489540 SLC15A2Q16348 729 aa23.16■■□□□ 1.3
MDC1-206ENST00000489540 GAS2L2Q8NHY3 880 aa23.16■■□□□ 1.3
MDC1-206ENST00000489540 PALLDQ8WX93 1383 aa23.15■■□□□ 1.3
MDC1-206ENST00000489540 NUP188Q5SRE5 1749 aa23.14■■□□□ 1.29
MDC1-206ENST00000489540 PRKRIP1Q9H875 184 aaPredicted RBP23.14■■□□□ 1.29
MDC1-206ENST00000489540 KDM6AO15550 1401 aaPredicted RBP23.13■■□□□ 1.29
MDC1-206ENST00000489540 ASAP1Q9ULH1 1129 aa23.12■■□□□ 1.29
MDC1-206ENST00000489540 RNMTO43148 476 aaKnown RBP23.11■■□□□ 1.29
MDC1-206ENST00000489540 KCNQ4P56696 695 aa23.11■■□□□ 1.29
MDC1-206ENST00000489540 NFATC2IPQ8NCF5 419 aa23.11■■□□□ 1.29
MDC1-206ENST00000489540 PHACTR3Q96KR7 559 aa23.11■■□□□ 1.29
MDC1-206ENST00000489540 ATG3Q9NT62 314 aa23.11■■□□□ 1.29
MDC1-206ENST00000489540 PNNQ9H307 717 aaKnown RBP23.1■■□□□ 1.29
MDC1-206ENST00000489540 LGR6Q9HBX8 967 aa23.1■■□□□ 1.29
MDC1-206ENST00000489540 TOGARAM1Q9Y4F4 1720 aa23.09■■□□□ 1.29
MDC1-206ENST00000489540 GNAT3A8MTJ3 354 aa23.09■■□□□ 1.29
MDC1-206ENST00000489540 NEFMP07197 916 aa23.09■■□□□ 1.29
MDC1-206ENST00000489540 AKT1S1Q96B36 256 aa23.09■■□□□ 1.29
MDC1-206ENST00000489540 LOC102724428A0A0B4J2F2 783 aa23.08■■□□□ 1.29
MDC1-206ENST00000489540 SIK1P57059 783 aa23.08■■□□□ 1.29
MDC1-206ENST00000489540 SLC52A2Q9HAB3 445 aa23.08■■□□□ 1.29
MDC1-206ENST00000489540 ZNF827Q17R98 1081 aa23.07■■□□□ 1.28
MDC1-206ENST00000489540 MAP3K5Q99683 1374 aa23.06■■□□□ 1.28
MDC1-206ENST00000489540 TFCP2L1Q9NZI6 479 aa23.06■■□□□ 1.28
MDC1-206ENST00000489540 ITGB4P16144 1822 aa23.04■■□□□ 1.28
MDC1-206ENST00000489540 ATP6V1AP38606 617 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms